HEADER TRANSFERASE 11-JAN-02 1IT7 TITLE CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE TITLE 2 COMPLEXED WITH GUANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.29; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS (ALPHA/BETA)8 BARREL, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 2 INITIATIVE, RSGI, STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ISHITANI,O.NUREKI,S.FUKAI,T.KIJIMOTO,N.NAMEKI,M.WATANABE,H.KONDO, AUTHOR 2 M.SEKINE,N.OKADA,S.NISHIMURA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 25-OCT-23 1IT7 1 REMARK LINK REVDAT 4 07-FEB-18 1IT7 1 REMARK REVDAT 3 24-FEB-09 1IT7 1 VERSN REVDAT 2 07-JAN-03 1IT7 1 REMARK REVDAT 1 22-MAY-02 1IT7 0 JRNL AUTH R.ISHITANI,O.NUREKI,S.FUKAI,T.KIJIMOTO,N.NAMEKI,M.WATANABE, JRNL AUTH 2 H.KONDO,M.SEKINE,N.OKADA,S.NISHIMURA,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE JRNL TITL 2 TRANSGLYCOSYLASE. JRNL REF J.MOL.BIOL. V. 318 665 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12054814 JRNL DOI 10.1016/S0022-2836(02)00090-6 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 82093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8228 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11665 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1259 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.82000 REMARK 3 B22 (A**2) : 4.82000 REMARK 3 B33 (A**2) : -9.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.230 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.010 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.010 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.040 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 34.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : GUN.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : GUN.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000005256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45PX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.02 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 567949 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : 0.10700 REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 FOR SHELL : 3.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IQ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA PHOSPHATE, K PHOSPHATE, NA ACETATE, REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 182.32900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.10050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.10050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 273.49350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.10050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.10050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.16450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.10050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.10050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 273.49350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.10050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.10050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.16450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 182.32900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 GLY A 4 REMARK 465 ASP A 5 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 ASP B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 48.61 35.92 REMARK 500 VAL A 109 142.61 -173.39 REMARK 500 LEU A 129 60.16 -67.18 REMARK 500 GLN A 169 -151.61 -122.63 REMARK 500 SER A 171 -139.80 53.95 REMARK 500 PRO A 234 -35.07 -37.87 REMARK 500 HIS A 352 49.13 -79.58 REMARK 500 GLN A 419 48.23 -74.19 REMARK 500 ALA A 422 -151.50 -132.98 REMARK 500 ALA A 436 -72.28 -19.76 REMARK 500 ARG A 454 -5.59 -57.91 REMARK 500 ARG A 470 -100.58 -137.85 REMARK 500 ASN A 475 43.23 25.54 REMARK 500 LYS A 477 151.54 -19.04 REMARK 500 ALA A 480 -176.29 -172.75 REMARK 500 TYR A 541 7.63 83.11 REMARK 500 ILE B 82 -44.24 -26.03 REMARK 500 SER B 106 148.14 106.58 REMARK 500 GLU B 108 59.31 -90.55 REMARK 500 GLU B 161 30.44 -142.01 REMARK 500 SER B 171 -138.07 59.11 REMARK 500 ASP B 272 0.54 -62.64 REMARK 500 SER B 372 -179.21 -172.74 REMARK 500 ARG B 394 -82.66 -95.92 REMARK 500 PHE B 395 -5.63 -53.29 REMARK 500 SER B 420 143.23 -32.44 REMARK 500 ALA B 422 -151.95 -128.58 REMARK 500 ARG B 454 -7.57 -55.43 REMARK 500 ASP B 458 43.80 -81.79 REMARK 500 ARG B 470 -106.75 -128.57 REMARK 500 ASN B 475 -11.91 64.28 REMARK 500 ILE B 493 -39.60 -38.04 REMARK 500 ASN B 513 171.34 -59.62 REMARK 500 ALA B 555 178.07 179.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 600 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 279 SG REMARK 620 2 CYS A 281 SG 105.6 REMARK 620 3 CYS A 284 SG 108.4 111.0 REMARK 620 4 HIS A 307 ND1 114.4 116.6 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 528 O REMARK 620 2 MET A 566 O 88.0 REMARK 620 3 ILE A 567 O 164.9 77.0 REMARK 620 4 PHE A 569 O 89.0 88.5 92.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 600 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 279 SG REMARK 620 2 CYS B 281 SG 100.5 REMARK 620 3 CYS B 284 SG 106.9 113.4 REMARK 620 4 HIS B 307 ND1 114.5 121.5 99.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 528 O REMARK 620 2 MET B 566 O 85.1 REMARK 620 3 ILE B 567 O 169.7 85.5 REMARK 620 4 PHE B 569 O 89.2 93.4 95.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GUN A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IQ8 RELATED DB: PDB REMARK 900 1IQ8 CONTAINS THE SAME PROTEIN. REMARK 900 RELATED ID: 1IT8 RELATED DB: PDB REMARK 900 1IT8 CONTAINS THE SAME PROTEIN COMPLEXED WITH ARCHAEOSINE PRECURSOR, REMARK 900 PREQ0. REMARK 900 RELATED ID: TRT001000258.2 RELATED DB: TARGETDB DBREF 1IT7 A 1 582 UNP O58843 O58843_PYRHO 1 582 DBREF 1IT7 B 1 582 UNP O58843 O58843_PYRHO 1 582 SEQRES 1 A 582 MET SER ARG GLY ASP LYS MET LEU LYS PHE GLU ILE LYS SEQRES 2 A 582 ALA ARG ASP GLY ALA GLY ARG ILE GLY LYS LEU GLU VAL SEQRES 3 A 582 ASN GLY LYS LYS ILE GLU THR PRO ALA ILE MET PRO VAL SEQRES 4 A 582 VAL ASN PRO LYS GLN MET VAL VAL GLU PRO LYS GLU LEU SEQRES 5 A 582 GLU LYS MET GLY PHE GLU ILE ILE ILE THR ASN SER TYR SEQRES 6 A 582 ILE ILE TYR LYS ASP GLU GLU LEU ARG ARG LYS ALA LEU SEQRES 7 A 582 GLU LEU GLY ILE HIS ARG MET LEU ASP TYR ASN GLY ILE SEQRES 8 A 582 ILE GLU VAL ASP SER GLY SER PHE GLN LEU MET LYS TYR SEQRES 9 A 582 GLY SER ILE GLU VAL SER ASN ARG GLU ILE ILE GLU PHE SEQRES 10 A 582 GLN HIS ARG ILE GLY VAL ASP ILE GLY THR PHE LEU ASP SEQRES 11 A 582 ILE PRO THR PRO PRO ASP ALA PRO ARG GLU GLN ALA VAL SEQRES 12 A 582 LYS GLU LEU GLU ILE THR LEU SER ARG ALA ARG GLU ALA SEQRES 13 A 582 GLU GLU ILE LYS GLU ILE PRO MET ASN ALA THR ILE GLN SEQRES 14 A 582 GLY SER THR TYR THR ASP LEU ARG ARG TYR ALA ALA ARG SEQRES 15 A 582 ARG LEU SER SER MET ASN PHE GLU ILE HIS PRO ILE GLY SEQRES 16 A 582 GLY VAL VAL PRO LEU LEU GLU SER TYR ARG PHE ARG ASP SEQRES 17 A 582 VAL VAL ASP ILE VAL ILE SER SER LYS MET ALA LEU ARG SEQRES 18 A 582 PRO ASP ARG PRO VAL HIS LEU PHE GLY ALA GLY HIS PRO SEQRES 19 A 582 ILE VAL PHE ALA LEU ALA VAL ALA MET GLY VAL ASP LEU SEQRES 20 A 582 PHE ASP SER ALA SER TYR ALA LEU TYR ALA LYS ASP ASP SEQRES 21 A 582 ARG TYR MET THR PRO GLU GLY THR LYS ARG LEU ASP GLU SEQRES 22 A 582 LEU ASP TYR PHE PRO CYS SER CYS PRO VAL CYS SER LYS SEQRES 23 A 582 TYR THR PRO GLN GLU LEU ARG GLU MET PRO LYS GLU GLU SEQRES 24 A 582 ARG THR ARG LEU LEU ALA LEU HIS ASN LEU TRP VAL ILE SEQRES 25 A 582 LYS GLU GLU ILE LYS ARG VAL LYS GLN ALA ILE LYS GLU SEQRES 26 A 582 GLY GLU LEU TRP ARG LEU VAL ASP GLU ARG ALA ARG SER SEQRES 27 A 582 HIS PRO LYS LEU TYR SER ALA TYR LYS ARG LEU LEU GLU SEQRES 28 A 582 HIS TYR THR PHE LEU GLU GLU PHE GLU PRO ILE THR LYS SEQRES 29 A 582 LYS SER ALA LEU PHE LYS ILE SER ASN GLU SER LEU ARG SEQRES 30 A 582 TRP PRO VAL VAL ARG ARG ALA LYS GLU ARG ALA LYS SER SEQRES 31 A 582 ILE ASN GLU ARG PHE GLY GLU LEU VAL GLU HIS PRO ILE SEQRES 32 A 582 PHE GLY ARG VAL SER ARG TYR LEU SER LEU THR TYR PRO SEQRES 33 A 582 PHE ALA GLN SER GLU ALA GLU ASP ASP PHE LYS ILE GLU SEQRES 34 A 582 LYS PRO THR LYS GLU ASP ALA ILE LYS TYR VAL MET ALA SEQRES 35 A 582 ILE ALA GLU TYR GLN PHE GLY GLU GLY ALA SER ARG ALA SEQRES 36 A 582 PHE ASP ASP ALA LYS VAL GLU LEU SER LYS THR GLY MET SEQRES 37 A 582 PRO ARG GLN VAL LYS VAL ASN GLY LYS ARG LEU ALA THR SEQRES 38 A 582 VAL ARG ALA ASP ASP GLY LEU LEU THR LEU GLY ILE GLU SEQRES 39 A 582 GLY ALA LYS ARG LEU HIS ARG VAL LEU PRO TYR PRO ARG SEQRES 40 A 582 MET ARG VAL VAL VAL ASN LYS GLU ALA GLU PRO PHE ALA SEQRES 41 A 582 ARG LYS GLY LYS ASP VAL PHE ALA LYS PHE VAL ILE PHE SEQRES 42 A 582 ALA ASP PRO GLY ILE ARG PRO TYR ASP GLU VAL LEU VAL SEQRES 43 A 582 VAL ASN GLU ASN ASP GLU LEU LEU ALA THR GLY GLN ALA SEQRES 44 A 582 LEU LEU SER GLY ARG GLU MET ILE VAL PHE GLN TYR GLY SEQRES 45 A 582 ARG ALA VAL LYS VAL ARG LYS GLY VAL GLU SEQRES 1 B 582 MET SER ARG GLY ASP LYS MET LEU LYS PHE GLU ILE LYS SEQRES 2 B 582 ALA ARG ASP GLY ALA GLY ARG ILE GLY LYS LEU GLU VAL SEQRES 3 B 582 ASN GLY LYS LYS ILE GLU THR PRO ALA ILE MET PRO VAL SEQRES 4 B 582 VAL ASN PRO LYS GLN MET VAL VAL GLU PRO LYS GLU LEU SEQRES 5 B 582 GLU LYS MET GLY PHE GLU ILE ILE ILE THR ASN SER TYR SEQRES 6 B 582 ILE ILE TYR LYS ASP GLU GLU LEU ARG ARG LYS ALA LEU SEQRES 7 B 582 GLU LEU GLY ILE HIS ARG MET LEU ASP TYR ASN GLY ILE SEQRES 8 B 582 ILE GLU VAL ASP SER GLY SER PHE GLN LEU MET LYS TYR SEQRES 9 B 582 GLY SER ILE GLU VAL SER ASN ARG GLU ILE ILE GLU PHE SEQRES 10 B 582 GLN HIS ARG ILE GLY VAL ASP ILE GLY THR PHE LEU ASP SEQRES 11 B 582 ILE PRO THR PRO PRO ASP ALA PRO ARG GLU GLN ALA VAL SEQRES 12 B 582 LYS GLU LEU GLU ILE THR LEU SER ARG ALA ARG GLU ALA SEQRES 13 B 582 GLU GLU ILE LYS GLU ILE PRO MET ASN ALA THR ILE GLN SEQRES 14 B 582 GLY SER THR TYR THR ASP LEU ARG ARG TYR ALA ALA ARG SEQRES 15 B 582 ARG LEU SER SER MET ASN PHE GLU ILE HIS PRO ILE GLY SEQRES 16 B 582 GLY VAL VAL PRO LEU LEU GLU SER TYR ARG PHE ARG ASP SEQRES 17 B 582 VAL VAL ASP ILE VAL ILE SER SER LYS MET ALA LEU ARG SEQRES 18 B 582 PRO ASP ARG PRO VAL HIS LEU PHE GLY ALA GLY HIS PRO SEQRES 19 B 582 ILE VAL PHE ALA LEU ALA VAL ALA MET GLY VAL ASP LEU SEQRES 20 B 582 PHE ASP SER ALA SER TYR ALA LEU TYR ALA LYS ASP ASP SEQRES 21 B 582 ARG TYR MET THR PRO GLU GLY THR LYS ARG LEU ASP GLU SEQRES 22 B 582 LEU ASP TYR PHE PRO CYS SER CYS PRO VAL CYS SER LYS SEQRES 23 B 582 TYR THR PRO GLN GLU LEU ARG GLU MET PRO LYS GLU GLU SEQRES 24 B 582 ARG THR ARG LEU LEU ALA LEU HIS ASN LEU TRP VAL ILE SEQRES 25 B 582 LYS GLU GLU ILE LYS ARG VAL LYS GLN ALA ILE LYS GLU SEQRES 26 B 582 GLY GLU LEU TRP ARG LEU VAL ASP GLU ARG ALA ARG SER SEQRES 27 B 582 HIS PRO LYS LEU TYR SER ALA TYR LYS ARG LEU LEU GLU SEQRES 28 B 582 HIS TYR THR PHE LEU GLU GLU PHE GLU PRO ILE THR LYS SEQRES 29 B 582 LYS SER ALA LEU PHE LYS ILE SER ASN GLU SER LEU ARG SEQRES 30 B 582 TRP PRO VAL VAL ARG ARG ALA LYS GLU ARG ALA LYS SER SEQRES 31 B 582 ILE ASN GLU ARG PHE GLY GLU LEU VAL GLU HIS PRO ILE SEQRES 32 B 582 PHE GLY ARG VAL SER ARG TYR LEU SER LEU THR TYR PRO SEQRES 33 B 582 PHE ALA GLN SER GLU ALA GLU ASP ASP PHE LYS ILE GLU SEQRES 34 B 582 LYS PRO THR LYS GLU ASP ALA ILE LYS TYR VAL MET ALA SEQRES 35 B 582 ILE ALA GLU TYR GLN PHE GLY GLU GLY ALA SER ARG ALA SEQRES 36 B 582 PHE ASP ASP ALA LYS VAL GLU LEU SER LYS THR GLY MET SEQRES 37 B 582 PRO ARG GLN VAL LYS VAL ASN GLY LYS ARG LEU ALA THR SEQRES 38 B 582 VAL ARG ALA ASP ASP GLY LEU LEU THR LEU GLY ILE GLU SEQRES 39 B 582 GLY ALA LYS ARG LEU HIS ARG VAL LEU PRO TYR PRO ARG SEQRES 40 B 582 MET ARG VAL VAL VAL ASN LYS GLU ALA GLU PRO PHE ALA SEQRES 41 B 582 ARG LYS GLY LYS ASP VAL PHE ALA LYS PHE VAL ILE PHE SEQRES 42 B 582 ALA ASP PRO GLY ILE ARG PRO TYR ASP GLU VAL LEU VAL SEQRES 43 B 582 VAL ASN GLU ASN ASP GLU LEU LEU ALA THR GLY GLN ALA SEQRES 44 B 582 LEU LEU SER GLY ARG GLU MET ILE VAL PHE GLN TYR GLY SEQRES 45 B 582 ARG ALA VAL LYS VAL ARG LYS GLY VAL GLU HET ZN A 600 1 HET MG A 601 1 HET GUN A 602 11 HET ZN B 600 1 HET MG B 601 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM GUN GUANINE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 GUN C5 H5 N5 O FORMUL 8 HOH *184(H2 O) HELIX 1 1 GLU A 48 MET A 55 1 8 HELIX 2 2 SER A 64 ASP A 70 1 7 HELIX 3 3 ASP A 70 ASP A 87 1 18 HELIX 4 4 GLY A 97 GLY A 105 1 9 HELIX 5 5 SER A 110 ILE A 121 1 12 HELIX 6 6 PRO A 138 LYS A 160 1 23 HELIX 7 7 TYR A 173 SER A 186 1 14 HELIX 8 8 VAL A 197 TYR A 204 1 8 HELIX 9 9 ARG A 205 LEU A 220 1 16 HELIX 10 10 HIS A 233 ILE A 235 5 3 HELIX 11 11 VAL A 236 MET A 243 1 8 HELIX 12 12 ALA A 251 LYS A 258 1 8 HELIX 13 13 ASP A 272 LEU A 274 5 3 HELIX 14 14 THR A 288 ARG A 293 1 6 HELIX 15 15 PRO A 296 GLU A 325 1 30 HELIX 16 16 GLU A 327 ARG A 337 1 11 HELIX 17 17 HIS A 339 HIS A 352 1 14 HELIX 18 18 HIS A 352 GLU A 360 1 9 HELIX 19 19 ASN A 373 ARG A 377 5 5 HELIX 20 20 TRP A 378 GLY A 396 1 19 HELIX 21 21 ASP A 435 PHE A 448 1 14 HELIX 22 22 GLY A 451 PHE A 456 5 6 HELIX 23 23 GLY A 492 LEU A 503 1 12 HELIX 24 24 ALA A 516 LYS A 522 1 7 HELIX 25 25 SER A 562 PHE A 569 1 8 HELIX 26 26 GLU B 48 MET B 55 1 8 HELIX 27 27 SER B 64 ASP B 70 1 7 HELIX 28 28 ASP B 70 ASP B 87 1 18 HELIX 29 29 GLY B 97 GLY B 105 1 9 HELIX 30 30 SER B 110 ILE B 121 1 12 HELIX 31 31 PRO B 138 LYS B 160 1 23 HELIX 32 32 TYR B 173 MET B 187 1 15 HELIX 33 33 VAL B 197 SER B 203 1 7 HELIX 34 34 ARG B 205 LEU B 220 1 16 HELIX 35 35 VAL B 236 MET B 243 1 8 HELIX 36 36 ALA B 251 ASP B 259 1 9 HELIX 37 37 ASP B 272 LEU B 274 5 3 HELIX 38 38 THR B 288 MET B 295 1 8 HELIX 39 39 PRO B 296 GLY B 326 1 31 HELIX 40 40 GLU B 327 ARG B 337 1 11 HELIX 41 41 HIS B 339 HIS B 352 1 14 HELIX 42 42 HIS B 352 GLU B 360 1 9 HELIX 43 43 ASN B 373 ARG B 377 5 5 HELIX 44 44 TRP B 378 PHE B 395 1 18 HELIX 45 45 TYR B 410 SER B 412 5 3 HELIX 46 46 ASP B 435 GLY B 449 1 15 HELIX 47 47 GLY B 451 PHE B 456 5 6 HELIX 48 48 GLY B 492 LEU B 503 1 12 HELIX 49 49 ALA B 516 GLY B 523 1 8 HELIX 50 50 SER B 562 PHE B 569 1 8 SHEET 1 A 3 LEU A 8 ASP A 16 0 SHEET 2 A 3 GLY A 19 VAL A 26 -1 O ILE A 21 N ALA A 14 SHEET 3 A 3 LYS A 29 THR A 33 -1 O LYS A 29 N VAL A 26 SHEET 1 B 4 ALA A 35 PRO A 38 0 SHEET 2 B 4 LEU A 247 SER A 250 1 O PHE A 248 N MET A 37 SHEET 3 B 4 VAL A 226 LEU A 228 1 N LEU A 228 O LEU A 247 SHEET 4 B 4 HIS A 192 ILE A 194 1 N ILE A 194 O HIS A 227 SHEET 1 C 2 ILE A 59 ASN A 63 0 SHEET 2 C 2 ILE A 91 ASP A 95 1 O ASP A 95 N THR A 62 SHEET 1 D 2 GLY A 126 THR A 127 0 SHEET 2 D 2 MET A 164 ASN A 165 1 O ASN A 165 N GLY A 126 SHEET 1 E 2 ARG A 261 THR A 264 0 SHEET 2 E 2 GLY A 267 ARG A 270 -1 O LYS A 269 N TYR A 262 SHEET 1 F 2 LEU A 368 PHE A 369 0 SHEET 2 F 2 SER A 420 GLU A 421 1 O GLU A 421 N LEU A 368 SHEET 1 G 2 LEU A 398 HIS A 401 0 SHEET 2 G 2 GLY A 405 SER A 408 -1 O GLY A 405 N HIS A 401 SHEET 1 H 4 LYS A 460 LEU A 463 0 SHEET 2 H 4 PRO A 469 LYS A 473 -1 O LYS A 473 N LYS A 460 SHEET 3 H 4 ARG A 478 VAL A 482 -1 O LEU A 479 N VAL A 472 SHEET 4 H 4 LEU A 489 LEU A 491 -1 O THR A 490 N THR A 481 SHEET 1 I 6 VAL A 526 PHE A 527 0 SHEET 2 I 6 ARG A 573 GLY A 580 -1 O ALA A 574 N VAL A 526 SHEET 3 I 6 LEU A 553 ALA A 559 -1 N GLN A 558 O LYS A 576 SHEET 4 I 6 GLU A 543 VAL A 547 -1 N VAL A 546 O LEU A 554 SHEET 5 I 6 ARG A 509 VAL A 512 1 N VAL A 510 O VAL A 547 SHEET 6 I 6 VAL A 531 ALA A 534 -1 O PHE A 533 N VAL A 511 SHEET 1 J 3 LYS B 9 ASP B 16 0 SHEET 2 J 3 GLY B 19 VAL B 26 -1 O ILE B 21 N ALA B 14 SHEET 3 J 3 LYS B 29 THR B 33 -1 O ILE B 31 N LEU B 24 SHEET 1 K 6 ILE B 91 ASP B 95 0 SHEET 2 K 6 ILE B 59 ASN B 63 1 N THR B 62 O ASP B 95 SHEET 3 K 6 ALA B 35 VAL B 40 1 N VAL B 40 O ILE B 61 SHEET 4 K 6 LEU B 247 SER B 250 1 O PHE B 248 N MET B 37 SHEET 5 K 6 VAL B 226 LEU B 228 1 N LEU B 228 O LEU B 247 SHEET 6 K 6 HIS B 192 ILE B 194 1 N ILE B 194 O HIS B 227 SHEET 1 L 2 GLY B 126 THR B 127 0 SHEET 2 L 2 MET B 164 ASN B 165 1 O ASN B 165 N GLY B 126 SHEET 1 M 2 ARG B 261 THR B 264 0 SHEET 2 M 2 GLY B 267 ARG B 270 -1 O LYS B 269 N TYR B 262 SHEET 1 N 2 LEU B 398 HIS B 401 0 SHEET 2 N 2 GLY B 405 SER B 408 -1 O GLY B 405 N HIS B 401 SHEET 1 O 4 LYS B 460 LEU B 463 0 SHEET 2 O 4 PRO B 469 VAL B 474 -1 O LYS B 473 N LYS B 460 SHEET 3 O 4 LYS B 477 VAL B 482 -1 O ALA B 480 N VAL B 472 SHEET 4 O 4 LEU B 489 LEU B 491 -1 O THR B 490 N THR B 481 SHEET 1 P 6 VAL B 526 PHE B 527 0 SHEET 2 P 6 ARG B 573 GLY B 580 -1 O ALA B 574 N VAL B 526 SHEET 3 P 6 LEU B 553 ALA B 559 -1 N THR B 556 O ARG B 578 SHEET 4 P 6 GLU B 543 VAL B 547 -1 N VAL B 546 O LEU B 554 SHEET 5 P 6 ARG B 509 VAL B 512 1 N VAL B 510 O VAL B 547 SHEET 6 P 6 VAL B 531 ALA B 534 -1 O PHE B 533 N VAL B 511 LINK SG CYS A 279 ZN ZN A 600 1555 1555 2.50 LINK SG CYS A 281 ZN ZN A 600 1555 1555 2.36 LINK SG CYS A 284 ZN ZN A 600 1555 1555 2.33 LINK ND1 HIS A 307 ZN ZN A 600 1555 1555 2.11 LINK O ALA A 528 MG MG A 601 1555 1555 2.51 LINK O MET A 566 MG MG A 601 1555 1555 2.65 LINK O ILE A 567 MG MG A 601 1555 1555 2.50 LINK O PHE A 569 MG MG A 601 1555 1555 2.55 LINK SG CYS B 279 ZN ZN B 600 1555 1555 2.45 LINK SG CYS B 281 ZN ZN B 600 1555 1555 2.32 LINK SG CYS B 284 ZN ZN B 600 1555 1555 2.30 LINK ND1 HIS B 307 ZN ZN B 600 1555 1555 2.18 LINK O ALA B 528 MG MG B 601 1555 1555 2.52 LINK O MET B 566 MG MG B 601 1555 1555 2.58 LINK O ILE B 567 MG MG B 601 1555 1555 2.53 LINK O PHE B 569 MG MG B 601 1555 1555 2.74 CISPEP 1 THR A 33 PRO A 34 0 0.42 CISPEP 2 TYR A 415 PRO A 416 0 -0.23 CISPEP 3 TYR A 505 PRO A 506 0 -0.04 CISPEP 4 THR B 33 PRO B 34 0 0.11 CISPEP 5 TYR B 415 PRO B 416 0 0.13 CISPEP 6 TYR B 505 PRO B 506 0 0.20 SITE 1 AC1 4 CYS A 279 CYS A 281 CYS A 284 HIS A 307 SITE 1 AC2 6 ALA A 528 VAL A 531 MET A 566 ILE A 567 SITE 2 AC2 6 PHE A 569 GLN A 570 SITE 1 AC3 4 CYS B 279 CYS B 281 CYS B 284 HIS B 307 SITE 1 AC4 6 ALA B 528 VAL B 531 MET B 566 ILE B 567 SITE 2 AC4 6 PHE B 569 GLN B 570 SITE 1 AC5 11 ASP A 95 SER A 98 ASP A 130 PRO A 132 SITE 2 AC5 11 GLN A 169 GLY A 195 GLY A 196 VAL A 198 SITE 3 AC5 11 PHE A 229 HOH A 603 HOH A 622 CRYST1 100.201 100.201 364.658 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002742 0.00000