HEADER    DNA BINDING PROTEIN                     23-JAN-03   1J3D              
TITLE     SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE HMGB2              
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: HIGH MOBILITY GROUP PROTEIN 2;                             
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: C-TERMINAL DOMAIN, B DOMAIN;                               
COMPND   5 SYNONYM: HIGH MOBILITY GROUP B2, HMG2, HMGB2;                        
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SUS SCROFA;                                     
SOURCE   3 ORGANISM_COMMON: PIG;                                                
SOURCE   4 ORGANISM_TAXID: 9823;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: PET;                                       
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET-22B                                   
KEYWDS    HMG-BOX, DNA BINDING PROTEIN                                          
EXPDTA    SOLUTION NMR                                                          
NUMMDL    30                                                                    
AUTHOR    J.KURITA,H.SHIMAHARA,M.YOSHIDA,S.TATE                                 
REVDAT   4   27-DEC-23 1J3D    1       REMARK                                   
REVDAT   3   23-FEB-22 1J3D    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 1J3D    1       VERSN                                    
REVDAT   1   25-MAY-04 1J3D    0                                                
JRNL        AUTH   J.KURITA,H.SHIMAHARA,M.YOSHIDA,S.TATE                        
JRNL        TITL   STRUCUTRAL COMPARISON OF TWO HMG-BOXES IN THE NON-HISTONE    
JRNL        TITL 2 PROTEIN HMG-2 WITH IN THE HMG-1                              
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : ARIA 1.1, X-PLOR 3.851                               
REMARK   3   AUTHORS     : NILGES (ARIA), BRUNGER (X-PLOR)                      
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1J3D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-03.                  
REMARK 100 THE DEPOSITION ID IS D_1000005579.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298; 303                           
REMARK 210  PH                             : 5.0; 6.4                           
REMARK 210  IONIC STRENGTH                 : NULL; NULL                         
REMARK 210  PRESSURE                       : AMBIENT; AMBIENT                   
REMARK 210  SAMPLE CONTENTS                : 1MM C-TERMINAL DOMAIN U-15N,13C;   
REMARK 210                                   50MM ACETATE BUFFER NA; 1MM C-     
REMARK 210                                   TERMINAL DOMAIN NON-LABEL; 50MM    
REMARK 210                                   ACETATE BUFFER NA; 1MM C-          
REMARK 210                                   TERMINAL DOMAIN U-15N; 50MM        
REMARK 210                                   PHOSPHATE BUFFER NA                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_13C-SEPARATED_NOESY; 3D_15N     
REMARK 210                                   -SEPARATED_NOESY; 2D NOESY; CT_    
REMARK 210                                   HMQC; IPAP                         
REMARK 210  SPECTROMETER FIELD STRENGTH    : 750 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 2001.157.17.50             
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 30                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR      
REMARK 210  SPECTROSCOPY.                                                       
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 LEU A  17      -73.80    -64.99                                   
REMARK 500  1 HIS A  30       83.87   -152.57                                   
REMARK 500  1 LEU A  33      102.62    -50.35                                   
REMARK 500  1 SER A  34     -171.48    -56.89                                   
REMARK 500  1 SER A  50     -146.37    -93.81                                   
REMARK 500  1 LYS A  54      -34.20   -172.61                                   
REMARK 500  1 ALA A  77       59.36   -161.56                                   
REMARK 500  2 PRO A  12     -165.38    -71.70                                   
REMARK 500  2 SER A  13       44.72   -167.81                                   
REMARK 500  2 ALA A  14      -72.01     71.21                                   
REMARK 500  2 LEU A  17      -76.11    -63.61                                   
REMARK 500  2 HIS A  30       82.44   -150.16                                   
REMARK 500  2 LEU A  33      108.73    -48.72                                   
REMARK 500  2 SER A  34     -167.06    -73.44                                   
REMARK 500  2 SER A  50     -118.36    -93.75                                   
REMARK 500  2 ASP A  53       57.98   -119.82                                   
REMARK 500  2 LYS A  54      -31.02   -170.13                                   
REMARK 500  3 LYS A   9     -175.76    -56.25                                   
REMARK 500  3 PRO A  12     -167.69    -71.00                                   
REMARK 500  3 SER A  13       45.07   -168.91                                   
REMARK 500  3 ALA A  14      -69.71     73.26                                   
REMARK 500  3 LEU A  17      -71.84    -65.70                                   
REMARK 500  3 HIS A  30       75.64   -154.77                                   
REMARK 500  3 LEU A  33      100.34    -51.56                                   
REMARK 500  3 SER A  34     -171.10    -57.08                                   
REMARK 500  3 SER A  50     -110.26    -95.98                                   
REMARK 500  3 LYS A  54      -32.71   -170.43                                   
REMARK 500  4 PRO A  12     -163.91    -69.72                                   
REMARK 500  4 SER A  13       50.46   -174.09                                   
REMARK 500  4 ALA A  14      -69.69     73.33                                   
REMARK 500  4 LEU A  17      -72.68    -66.27                                   
REMARK 500  4 SER A  34     -168.87   -105.02                                   
REMARK 500  4 ASP A  37      -54.79   -147.23                                   
REMARK 500  4 SER A  50     -149.68    -91.83                                   
REMARK 500  4 ASP A  53       54.89   -119.36                                   
REMARK 500  4 LYS A  54      -33.01   -168.43                                   
REMARK 500  5 SER A  13       39.89   -162.50                                   
REMARK 500  5 ALA A  14      -73.27     70.08                                   
REMARK 500  5 LEU A  17      -71.14    -66.56                                   
REMARK 500  5 SER A  34     -168.86   -105.02                                   
REMARK 500  5 ASP A  37      -52.77   -148.69                                   
REMARK 500  5 SER A  50     -149.83    -90.45                                   
REMARK 500  5 LYS A  54      -35.28   -171.29                                   
REMARK 500  5 GLN A  59      -70.20    -77.55                                   
REMARK 500  5 ALA A  77       98.39   -176.59                                   
REMARK 500  6 SER A  13       39.09   -161.53                                   
REMARK 500  6 ALA A  14      -72.75     70.61                                   
REMARK 500  6 LEU A  17      -70.12    -67.86                                   
REMARK 500  6 HIS A  30       80.81   -151.59                                   
REMARK 500  6 SER A  34     -164.34    -59.46                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     275 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  1 ARG A  10         0.31    SIDE CHAIN                              
REMARK 500  1 ARG A  23         0.27    SIDE CHAIN                              
REMARK 500  1 ARG A  76         0.28    SIDE CHAIN                              
REMARK 500  2 ARG A  10         0.32    SIDE CHAIN                              
REMARK 500  2 ARG A  23         0.29    SIDE CHAIN                              
REMARK 500  2 ARG A  76         0.25    SIDE CHAIN                              
REMARK 500  3 ARG A  10         0.27    SIDE CHAIN                              
REMARK 500  3 ARG A  23         0.32    SIDE CHAIN                              
REMARK 500  3 ARG A  76         0.32    SIDE CHAIN                              
REMARK 500  4 ARG A  10         0.28    SIDE CHAIN                              
REMARK 500  4 ARG A  23         0.30    SIDE CHAIN                              
REMARK 500  4 ARG A  76         0.30    SIDE CHAIN                              
REMARK 500  5 ARG A  10         0.31    SIDE CHAIN                              
REMARK 500  5 ARG A  23         0.29    SIDE CHAIN                              
REMARK 500  5 ARG A  76         0.31    SIDE CHAIN                              
REMARK 500  6 ARG A  10         0.31    SIDE CHAIN                              
REMARK 500  6 ARG A  23         0.29    SIDE CHAIN                              
REMARK 500  6 ARG A  76         0.29    SIDE CHAIN                              
REMARK 500  7 ARG A  10         0.30    SIDE CHAIN                              
REMARK 500  7 ARG A  23         0.25    SIDE CHAIN                              
REMARK 500  7 ARG A  76         0.25    SIDE CHAIN                              
REMARK 500  8 ARG A  10         0.27    SIDE CHAIN                              
REMARK 500  8 ARG A  23         0.32    SIDE CHAIN                              
REMARK 500  8 ARG A  76         0.29    SIDE CHAIN                              
REMARK 500  9 ARG A  10         0.32    SIDE CHAIN                              
REMARK 500  9 ARG A  23         0.22    SIDE CHAIN                              
REMARK 500  9 ARG A  76         0.27    SIDE CHAIN                              
REMARK 500 10 ARG A  10         0.30    SIDE CHAIN                              
REMARK 500 10 ARG A  23         0.28    SIDE CHAIN                              
REMARK 500 10 ARG A  76         0.31    SIDE CHAIN                              
REMARK 500 11 ARG A  10         0.31    SIDE CHAIN                              
REMARK 500 11 ARG A  23         0.31    SIDE CHAIN                              
REMARK 500 11 ARG A  76         0.31    SIDE CHAIN                              
REMARK 500 12 ARG A  10         0.31    SIDE CHAIN                              
REMARK 500 12 ARG A  23         0.29    SIDE CHAIN                              
REMARK 500 12 ARG A  76         0.29    SIDE CHAIN                              
REMARK 500 13 ARG A  10         0.27    SIDE CHAIN                              
REMARK 500 13 ARG A  23         0.29    SIDE CHAIN                              
REMARK 500 13 ARG A  76         0.31    SIDE CHAIN                              
REMARK 500 14 ARG A  10         0.29    SIDE CHAIN                              
REMARK 500 14 ARG A  23         0.31    SIDE CHAIN                              
REMARK 500 14 ARG A  76         0.32    SIDE CHAIN                              
REMARK 500 15 ARG A  10         0.32    SIDE CHAIN                              
REMARK 500 15 ARG A  23         0.30    SIDE CHAIN                              
REMARK 500 15 ARG A  76         0.26    SIDE CHAIN                              
REMARK 500 16 ARG A  10         0.28    SIDE CHAIN                              
REMARK 500 16 ARG A  23         0.28    SIDE CHAIN                              
REMARK 500 16 ARG A  76         0.31    SIDE CHAIN                              
REMARK 500 17 ARG A  10         0.30    SIDE CHAIN                              
REMARK 500 17 ARG A  23         0.27    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      90 PLANE DEVIATIONS.                             
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1J3C   RELATED DB: PDB                                   
REMARK 900 THE SAME PROTEIN, H108Y MUTANT                                       
DBREF  1J3D A    2    78  UNP    P17741   HMG2_PIG        88    164             
SEQADV 1J3D MET A    1  UNP  P17741              INITIATING METHIONINE          
SEQRES   1 A   78  MET LYS LYS ASP PRO ASN ALA PRO LYS ARG PRO PRO SER          
SEQRES   2 A   78  ALA PHE PHE LEU PHE CYS SER GLU HIS ARG PRO LYS ILE          
SEQRES   3 A   78  LYS SER GLU HIS PRO GLY LEU SER ILE GLY ASP THR ALA          
SEQRES   4 A   78  LYS LYS LEU GLY GLU MET TRP SER GLU GLN SER ALA LYS          
SEQRES   5 A   78  ASP LYS GLN PRO TYR GLU GLN LYS ALA ALA LYS LEU LYS          
SEQRES   6 A   78  GLU LYS TYR GLU LYS ASP ILE ALA ALA TYR ARG ALA LYS          
HELIX    1   1 SER A   13  LYS A   27  1                                  15    
HELIX    2   2 GLY A   36  SER A   47  1                                  12    
HELIX    3   3 LYS A   54  LYS A   78  1                                  25    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1