HEADER SIGNALING PROTEIN 22-MAY-01 1J8M TITLE SIGNAL RECOGNITION PARTICLE CONSERVED GTPASE DOMAIN FROM A. AMBIVALENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL RECOGNITION 54 KDA PROTEIN; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: G-DOMAIN, GTPASE DOMAIN; COMPND 5 SYNONYM: SRP54; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDIANUS AMBIVALENS; SOURCE 3 ORGANISM_TAXID: 2283; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-16 KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MONTOYA,K.TE KAAT,R.MOLL,G.SCHAFER,I.SINNING REVDAT 4 07-FEB-24 1J8M 1 SEQADV REVDAT 3 24-FEB-09 1J8M 1 VERSN REVDAT 2 01-APR-03 1J8M 1 JRNL REVDAT 1 13-JUN-01 1J8M 0 JRNL AUTH G.MONTOYA,K.KAAT,R.MOLL,G.SCHAFER,I.SINNING JRNL TITL THE CRYSTAL STRUCTURE OF THE CONSERVED GTPASE OF SRP54 FROM JRNL TITL 2 THE ARCHAEON ACIDIANUS AMBIVALENS AND ITS COMPARISON WITH JRNL TITL 3 RELATED STRUCTURES SUGGESTS A MODEL FOR THE SRP-SRP RECEPTOR JRNL TITL 4 COMPLEX. JRNL REF STRUCTURE FOLD.DES. V. 8 515 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 10801496 JRNL DOI 10.1016/S0969-2126(00)00131-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.MONTOYA,K.TE KAAT,R.MOLL,G.SCHAFER,I.SINNING REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES ON REMARK 1 TITL 2 THE CONSERVED GTPASE DOMAIN OF THE SIGNAL RECOGNITION REMARK 1 TITL 3 PARTICLE FROM ACIDIANUS AMBIVALENS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 55 1949 1999 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444999011348 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.18000 REMARK 3 B22 (A**2) : -2.47000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.058 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; 0.022 REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.165 ; 0.200 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : 0.180 ; 0.500 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.107 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.615 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.769 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.960 ; 4.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1000013496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20842 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.00200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.00200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.43300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.01000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.43300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.01000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.00200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.43300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.01000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.00200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.43300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.01000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER F 1 REMARK 465 LYS F 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS F 111 N THR F 112 1.63 REMARK 500 O GLY F 110 OG1 THR F 114 1.91 REMARK 500 O HOH F 325 O HOH F 388 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH F 368 O HOH F 422 3555 0.11 REMARK 500 O HOH F 298 O HOH F 298 4565 0.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS F 111 CB LYS F 111 CG 0.170 REMARK 500 LYS F 111 C THR F 112 N -0.375 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU F 7 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG F 12 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 GLY F 17 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 GLY F 17 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 TYR F 21 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP F 22 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP F 78 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 LYS F 111 CB - CG - CD ANGL. DEV. = -54.2 DEGREES REMARK 500 LYS F 111 CA - C - N ANGL. DEV. = 25.9 DEGREES REMARK 500 LYS F 111 O - C - N ANGL. DEV. = -28.9 DEGREES REMARK 500 THR F 112 C - N - CA ANGL. DEV. = 35.1 DEGREES REMARK 500 TYR F 157 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP F 164 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG F 171 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ALA F 189 CB - CA - C ANGL. DEV. = 10.3 DEGREES REMARK 500 MET F 204 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 ILE F 211 CA - CB - CG2 ANGL. DEV. = 15.1 DEGREES REMARK 500 ASP F 214 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP F 221 CB - CG - OD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP F 221 CB - CG - OD2 ANGL. DEV. = 15.4 DEGREES REMARK 500 THR F 252 CB - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 THR F 252 OG1 - CB - CG2 ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU F 259 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG F 288 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 HIS F 297 CA - CB - CG ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER F 18 -86.75 -35.95 REMARK 500 TYR F 65 -17.47 81.09 REMARK 500 ALA F 189 -94.26 -122.14 REMARK 500 THR F 274 -69.29 -96.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS F 111 THR F 112 95.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS F 111 14.81 REMARK 500 LYS F 163 -10.27 REMARK 500 THR F 252 -16.66 REMARK 500 THR F 274 -11.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH F 400 REMARK 615 HOH F 444 REMARK 615 HOH F 449 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J8Y RELATED DB: PDB DBREF 1J8M F 1 292 UNP P70722 SRP54_ACIAM 1 292 SEQADV 1J8M THR F 10 UNP P70722 ALA 10 SEE REMARK 999 SEQADV 1J8M VAL F 165 UNP P70722 ALA 165 SEE REMARK 999 SEQADV 1J8M LEU F 293 UNP P70722 EXPRESSION TAG SEQADV 1J8M HIS F 294 UNP P70722 EXPRESSION TAG SEQADV 1J8M HIS F 295 UNP P70722 EXPRESSION TAG SEQADV 1J8M HIS F 296 UNP P70722 EXPRESSION TAG SEQADV 1J8M HIS F 297 UNP P70722 EXPRESSION TAG SEQRES 1 F 297 SER LYS LEU LEU ASP ASN LEU ARG ASP THR VAL ARG LYS SEQRES 2 F 297 PHE LEU THR GLY SER SER SER TYR ASP LYS ALA VAL GLU SEQRES 3 F 297 ASP PHE ILE LYS GLU LEU GLN LYS SER LEU ILE SER ALA SEQRES 4 F 297 ASP VAL ASN VAL LYS LEU VAL PHE SER LEU THR ASN LYS SEQRES 5 F 297 ILE LYS GLU ARG LEU LYS ASN GLU LYS PRO PRO THR TYR SEQRES 6 F 297 ILE GLU ARG ARG GLU TRP PHE ILE LYS ILE VAL TYR ASP SEQRES 7 F 297 GLU LEU SER ASN LEU PHE GLY GLY ASP LYS GLU PRO LYS SEQRES 8 F 297 VAL ILE PRO ASP LYS ILE PRO TYR VAL ILE MET LEU VAL SEQRES 9 F 297 GLY VAL GLN GLY THR GLY LYS THR THR THR ALA GLY LYS SEQRES 10 F 297 LEU ALA TYR PHE TYR LYS LYS LYS GLY PHE LYS VAL GLY SEQRES 11 F 297 LEU VAL GLY ALA ASP VAL TYR ARG PRO ALA ALA LEU GLU SEQRES 12 F 297 GLN LEU GLN GLN LEU GLY GLN GLN ILE GLY VAL PRO VAL SEQRES 13 F 297 TYR GLY GLU PRO GLY GLU LYS ASP VAL VAL GLY ILE ALA SEQRES 14 F 297 LYS ARG GLY VAL GLU LYS PHE LEU SER GLU LYS MET GLU SEQRES 15 F 297 ILE ILE ILE VAL ASP THR ALA GLY ARG HIS GLY TYR GLY SEQRES 16 F 297 GLU GLU ALA ALA LEU LEU GLU GLU MET LYS ASN ILE TYR SEQRES 17 F 297 GLU ALA ILE LYS PRO ASP GLU VAL THR LEU VAL ILE ASP SEQRES 18 F 297 ALA SER ILE GLY GLN LYS ALA TYR ASP LEU ALA SER LYS SEQRES 19 F 297 PHE ASN GLN ALA SER LYS ILE GLY THR ILE ILE ILE THR SEQRES 20 F 297 LYS MET ASP GLY THR ALA LYS GLY GLY GLY ALA LEU SER SEQRES 21 F 297 ALA VAL ALA ALA THR GLY ALA THR ILE LYS PHE ILE GLY SEQRES 22 F 297 THR GLY GLU LYS ILE ASP GLU LEU GLU VAL PHE ASN PRO SEQRES 23 F 297 ARG ARG PHE VAL ALA ARG LEU HIS HIS HIS HIS FORMUL 2 HOH *159(H2 O) HELIX 1 1 LEU F 3 THR F 16 1 14 HELIX 2 2 SER F 20 ALA F 39 1 20 HELIX 3 3 ASN F 42 GLU F 60 1 19 HELIX 4 4 GLU F 67 PHE F 84 1 18 HELIX 5 5 THR F 112 LYS F 125 1 14 HELIX 6 6 PRO F 139 GLY F 153 1 15 HELIX 7 7 ASP F 164 GLU F 179 1 16 HELIX 8 8 GLU F 196 LYS F 212 1 17 HELIX 9 9 SER F 223 LYS F 227 5 5 HELIX 10 10 ALA F 228 ALA F 238 1 11 HELIX 11 11 LYS F 248 THR F 252 5 5 HELIX 12 12 LYS F 254 ALA F 264 1 11 HELIX 13 13 ASN F 285 ARG F 292 1 8 SHEET 1 A 8 VAL F 156 TYR F 157 0 SHEET 2 A 8 VAL F 129 GLY F 133 1 O LEU F 131 N TYR F 157 SHEET 3 A 8 ILE F 183 ASP F 187 1 O ILE F 183 N GLY F 130 SHEET 4 A 8 TYR F 99 VAL F 104 1 O TYR F 99 N ILE F 184 SHEET 5 A 8 GLU F 215 ASP F 221 1 O GLU F 215 N MET F 102 SHEET 6 A 8 GLY F 242 THR F 247 1 O THR F 243 N LEU F 218 SHEET 7 A 8 ILE F 269 GLY F 273 1 N LYS F 270 O ILE F 244 SHEET 8 A 8 LEU F 281 VAL F 283 -1 O GLU F 282 N ILE F 272 CISPEP 1 ILE F 97 PRO F 98 0 6.56 CRYST1 64.866 128.020 72.004 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013888 0.00000