data_1J9N # _entry.id 1J9N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1J9N pdb_00001j9n 10.2210/pdb1j9n/pdb RCSB RCSB013533 ? ? WWPDB D_1000013533 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1J9N _pdbx_database_status.recvd_initial_deposition_date 2001-05-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gomez-Pinto, I.' 1 'Marchan, V.' 2 'Gago, F.' 3 'Grandas, A.' 4 'Gonzalez, C.' 5 # _citation.id primary _citation.title 'Solution structure and stability of tryptophan-containing nucleopeptide duplexes' _citation.journal_abbrev Chembiochem _citation.journal_volume 4 _citation.page_first 40 _citation.page_last 49 _citation.year 2003 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1439-4227 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12512075 _citation.pdbx_database_id_DOI 10.1002/cbic.200390012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gomez-Pinto, I.' 1 ? primary 'Marchan, V.' 2 ? primary 'Gago, F.' 3 ? primary 'Grandas, A.' 4 ? primary 'Gonzalez, C.' 5 ? # _cell.entry_id 1J9N _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*TP*AP*CP*(PGN))-3'" 1889.198 1 ? ? ? ? 2 polymer syn "5'-D(*CP*GP*TP*AP*GP*C)-3'" 1809.217 1 ? ? ? ? 3 polymer syn 'peptide ACE-LYS-TRP-LYS-HSE-ALA' 660.804 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DC)(DT)(DA)(DC)(PGN)' GCTACG A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DA)(DG)(DC)' CGTAGC B ? 3 'polypeptide(L)' no yes '(ACE)KWK(HSE)A' XKWKSA C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 PGN n 2 1 DC n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DG n 2 6 DC n 3 1 ACE n 3 2 LYS n 3 3 TRP n 3 4 LYS n 3 5 HSE n 3 6 ALA n # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'CHEMICALLY SYNTHESIZED' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 1J9N 1J9N 1 ? ? ? 2 PDB 1J9N 1J9N 2 ? ? ? 3 PDB 1J9N 1J9N 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1J9N A 1 ? 6 ? 1J9N 1 ? 6 ? 1 6 2 2 1J9N B 1 ? 6 ? 1J9N 7 ? 12 ? 7 12 3 3 1J9N C 1 ? 6 ? 1J9N 12 ? 17 ? 12 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HSE 'L-peptide linking' n L-HOMOSERINE ? 'C4 H9 N O3' 119.119 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PGN 'DNA linking' n "2'-DEOXYGUANOSINE-3',5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 DQF-COSY # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 278 1 7 ? atm K 2 278 1 7 ? atm K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2mM nucleopeptide, 25 mM phosphate buffer, 100 mM NaCl, 90% H2O, 10% D2O' '90% H2O/10% D2O' 2 '2MM nucleopeptide, 25 mM phosphate buffer, 100 mM NaCl, 100% D2O' '100% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AMX _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1J9N _pdbx_nmr_refine.method ;molecular dynamics matrix relaxation ; _pdbx_nmr_refine.details ;the structures are based on a total of 276 NOE-derived distance constraints, and 33 dihedral angle restraints ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1J9N _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1J9N _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 1.3 collection bruker 1 MARDIGRAS 5.2 'iterative matrix relaxation' 'james, t.l.' 2 DYANA 1.5 'structure solution' 'guntert, P' 3 SANDER 5.0 refinement 'kollman, p.' 4 # _exptl.entry_id 1J9N _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1J9N _struct.title 'Solution Structure of the Nucleopeptide [AC-LYS-TRP-LYS-HSE(p3*dGCATCG)-ALA]-[p5*dCGTAGC]' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J9N _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'COVALENTLY LINKED PEPTIDE-DNA COMPLEX, TRYPTOPHAN STACKING, DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 5 "O3'" ? ? ? 1_555 A PGN 6 P ? ? A DC 5 A PGN 6 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale2 covale none ? A PGN 6 P1 ? ? ? 1_555 C HSE 5 O3 ? ? A PGN 6 C HSE 16 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale3 covale both ? C ACE 1 C ? ? ? 1_555 C LYS 2 N ? ? C ACE 12 C LYS 13 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale4 covale both ? C LYS 4 C ? ? ? 1_555 C HSE 5 N ? ? C LYS 15 C HSE 16 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? C HSE 5 C ? ? ? 1_555 C ALA 6 N ? ? C HSE 16 C ALA 17 1_555 ? ? ? ? ? ? ? 1.339 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A PGN 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A PGN 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A PGN 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A PGN 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A PGN 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A PGN 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1J9N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1J9N _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _database_PDB_caveat.text 'There are chirality errors' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 PGN 6 6 6 PGN PO2 A . n B 2 1 DC 1 7 7 DC C B . n B 2 2 DG 2 8 8 DG G B . n B 2 3 DT 3 9 9 DT T B . n B 2 4 DA 4 10 10 DA A B . n B 2 5 DG 5 11 11 DG G B . n B 2 6 DC 6 12 12 DC C B . n C 3 1 ACE 1 12 13 ACE ACE C . n C 3 2 LYS 2 13 13 LYS LYS C . n C 3 3 TRP 3 14 14 TRP TRP C . n C 3 4 LYS 4 15 15 LYS LYS C . n C 3 5 HSE 5 16 16 HSE HSE C . n C 3 6 ALA 6 17 17 ALA ALA C . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A PGN 6 A PGN 6 ? DG "2'-DEOXYGUANOSINE-3',5'-DIPHOSPHATE" 2 C HSE 5 C HSE 16 ? SER L-HOMOSERINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-01-21 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_nmr_software 6 4 'Structure model' pdbx_validate_torsion 7 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_atom_id' 2 4 'Structure model' '_atom_site.label_atom_id' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_nmr_software.name' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 110.98 106.00 4.98 0.60 N 2 1 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.19 119.00 4.19 0.60 N 3 1 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.81 122.90 -6.09 0.60 N 4 1 "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? P A DC 5 ? ? 127.03 119.70 7.33 1.20 Y 5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.98 108.30 6.68 0.30 N 6 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.25 108.30 2.95 0.30 N 7 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.94 108.30 2.64 0.30 N 8 1 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 110.13 106.00 4.13 0.60 N 9 1 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 117.63 109.80 7.83 1.10 N 10 1 "C1'" B DT 9 ? ? "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? 102.32 110.10 -7.78 1.00 N 11 1 "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 97.54 102.20 -4.66 0.70 N 12 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 98.28 105.90 -7.62 0.80 N 13 1 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 126.00 119.00 7.00 0.60 N 14 1 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 113.16 122.90 -9.74 0.60 N 15 1 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 114.11 118.60 -4.49 0.60 N 16 1 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? "C1'" B DG 11 ? ? 96.81 102.40 -5.59 0.80 N 17 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 113.39 108.30 5.09 0.30 N 18 2 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 110.09 106.00 4.09 0.60 N 19 2 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.59 108.30 2.29 0.30 N 20 2 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.76 119.00 4.76 0.60 N 21 2 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.60 122.90 -6.30 0.60 N 22 2 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? 110.19 106.00 4.19 0.60 N 23 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.21 108.30 5.91 0.30 N 24 2 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 113.89 108.30 5.59 0.30 N 25 2 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 112.60 108.30 4.30 0.30 N 26 2 C8 B DG 8 ? ? N9 B DG 8 ? ? C4 B DG 8 ? ? 103.92 106.40 -2.48 0.40 N 27 2 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 110.46 106.00 4.46 0.60 N 28 2 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 118.82 109.80 9.02 1.10 N 29 2 "C1'" B DT 9 ? ? "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? 102.10 110.10 -8.00 1.00 N 30 2 "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 96.53 102.20 -5.67 0.70 N 31 2 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 96.69 105.90 -9.21 0.80 N 32 2 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 125.04 119.00 6.04 0.60 N 33 2 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 114.24 122.90 -8.66 0.60 N 34 2 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 113.55 118.60 -5.05 0.60 N 35 2 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? "C1'" B DG 11 ? ? 97.21 102.40 -5.19 0.80 N 36 2 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 113.64 108.30 5.34 0.30 N 37 3 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.68 108.30 2.38 0.30 N 38 3 N3 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 122.37 118.00 4.37 0.70 N 39 3 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.64 119.00 4.64 0.60 N 40 3 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.55 122.90 -6.35 0.60 N 41 3 "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? P A DC 5 ? ? 126.98 119.70 7.28 1.20 Y 42 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.23 108.30 6.93 0.30 N 43 3 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.11 108.30 2.81 0.30 N 44 3 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.71 108.30 3.41 0.30 N 45 3 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 112.15 106.00 6.15 0.60 N 46 3 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 121.38 109.80 11.58 1.10 N 47 3 "C1'" B DT 9 ? ? "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? 100.90 110.10 -9.20 1.00 N 48 3 "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 97.19 102.20 -5.01 0.70 N 49 3 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 100.04 105.90 -5.86 0.80 N 50 3 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 125.99 119.00 6.99 0.60 N 51 3 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 113.03 122.90 -9.87 0.60 N 52 3 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 114.65 118.60 -3.95 0.60 N 53 3 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 112.98 108.30 4.68 0.30 N 54 4 "C5'" A DG 1 ? ? "C4'" A DG 1 ? ? "O4'" A DG 1 ? ? 119.32 109.80 9.52 1.10 N 55 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? "C2'" A DG 1 ? ? 110.37 106.80 3.57 0.50 N 56 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 115.03 108.30 6.73 0.30 N 57 4 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 109.63 106.00 3.63 0.60 N 58 4 N3 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 122.60 118.00 4.60 0.70 N 59 4 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.67 119.00 4.67 0.60 N 60 4 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.40 122.90 -6.50 0.60 N 61 4 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? 109.85 106.00 3.85 0.60 N 62 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.62 108.30 6.32 0.30 N 63 4 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 112.09 108.30 3.79 0.30 N 64 4 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.95 108.30 3.65 0.30 N 65 4 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 111.34 106.00 5.34 0.60 N 66 4 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 122.99 109.80 13.19 1.10 N 67 4 "C1'" B DT 9 ? ? "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? 101.50 110.10 -8.60 1.00 N 68 4 "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 96.36 102.20 -5.84 0.70 N 69 4 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 96.90 105.90 -9.00 0.80 N 70 4 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 110.83 108.30 2.53 0.30 N 71 4 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 125.64 119.00 6.64 0.60 N 72 4 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 112.92 122.90 -9.98 0.60 N 73 4 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 114.21 118.60 -4.39 0.60 N 74 4 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? "C1'" B DG 11 ? ? 96.99 102.40 -5.41 0.80 N 75 4 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 113.48 108.30 5.18 0.30 N 76 5 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.34 108.30 2.04 0.30 N 77 5 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.07 108.30 2.77 0.30 N 78 5 N3 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 122.50 118.00 4.50 0.70 N 79 5 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DT 3 ? ? 127.49 119.70 7.79 1.20 Y 80 5 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 124.54 119.00 5.54 0.60 N 81 5 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 115.95 122.90 -6.95 0.60 N 82 5 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? 109.99 106.00 3.99 0.60 N 83 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.04 108.30 5.74 0.30 N 84 5 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.44 108.30 2.14 0.30 N 85 5 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 122.57 118.90 3.67 0.60 N 86 5 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 112.05 108.30 3.75 0.30 N 87 5 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 111.69 106.00 5.69 0.60 N 88 5 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 119.77 109.80 9.97 1.10 N 89 5 "C1'" B DT 9 ? ? "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? 101.31 110.10 -8.79 1.00 N 90 5 "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 95.96 102.20 -6.24 0.70 N 91 5 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 98.41 105.90 -7.49 0.80 N 92 5 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 125.31 119.00 6.31 0.60 N 93 5 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 114.18 122.90 -8.72 0.60 N 94 5 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 114.01 118.60 -4.59 0.60 N 95 5 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? "C1'" B DG 11 ? ? 96.70 102.40 -5.70 0.80 N 96 5 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 113.28 108.30 4.98 0.30 N 97 6 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 109.94 106.00 3.94 0.60 N 98 6 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.41 108.30 2.11 0.30 N 99 6 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.31 119.00 4.31 0.60 N 100 6 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.93 122.90 -5.97 0.60 N 101 6 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? 109.69 106.00 3.69 0.60 N 102 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.31 108.30 7.01 0.30 N 103 6 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.13 108.30 2.83 0.30 N 104 6 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.03 108.30 2.73 0.30 N 105 6 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 112.02 106.00 6.02 0.60 N 106 6 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 120.11 109.80 10.31 1.10 N 107 6 "C1'" B DT 9 ? ? "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? 100.16 110.10 -9.94 1.00 N 108 6 "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 95.68 102.20 -6.52 0.70 N 109 6 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 97.75 105.90 -8.15 0.80 N 110 6 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 125.48 119.00 6.48 0.60 N 111 6 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 113.97 122.90 -8.93 0.60 N 112 6 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 110.84 108.30 2.54 0.30 N 113 6 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 114.04 118.60 -4.56 0.60 N 114 6 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? "C1'" B DG 11 ? ? 96.61 102.40 -5.79 0.80 N 115 6 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 112.44 108.30 4.14 0.30 N 116 7 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 110.24 106.00 4.24 0.60 N 117 7 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DT 3 ? ? 127.31 119.70 7.61 1.20 Y 118 7 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.56 119.00 4.56 0.60 N 119 7 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.68 122.90 -6.22 0.60 N 120 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.34 108.30 7.04 0.30 N 121 7 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 119.90 109.80 10.10 1.10 N 122 7 "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 97.36 102.20 -4.84 0.70 N 123 7 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 95.86 105.90 -10.04 0.80 N 124 7 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 111.51 108.30 3.21 0.30 N 125 7 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 126.39 119.00 7.39 0.60 N 126 7 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 113.14 122.90 -9.76 0.60 N 127 7 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 114.00 118.60 -4.60 0.60 N 128 7 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? "C1'" B DG 11 ? ? 96.44 102.40 -5.96 0.80 N 129 7 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 113.41 108.30 5.11 0.30 N 130 8 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.67 118.90 3.77 0.60 N 131 8 N3 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 122.68 118.00 4.68 0.70 N 132 8 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.33 119.00 4.33 0.60 N 133 8 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.02 122.90 -5.88 0.60 N 134 8 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? "O4'" A DC 5 ? ? 119.53 109.80 9.73 1.10 N 135 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 117.61 108.30 9.31 0.30 N 136 8 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.89 118.90 3.99 0.60 N 137 8 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.85 108.30 3.55 0.30 N 138 8 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.22 108.30 2.92 0.30 N 139 8 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 111.42 106.00 5.42 0.60 N 140 8 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 123.95 115.70 8.25 1.20 N 141 8 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 119.59 109.80 9.79 1.10 N 142 8 "C1'" B DT 9 ? ? "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? 103.58 110.10 -6.52 1.00 N 143 8 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 123.02 119.00 4.02 0.60 N 144 8 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 116.57 122.90 -6.33 0.60 N 145 8 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 113.91 118.60 -4.69 0.60 N 146 8 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? "C1'" B DG 11 ? ? 97.55 102.40 -4.85 0.80 N 147 8 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 113.39 108.30 5.09 0.30 N 148 9 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 110.84 106.00 4.84 0.60 N 149 9 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 124.55 119.00 5.55 0.60 N 150 9 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.06 122.90 -6.84 0.60 N 151 9 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? 109.62 106.00 3.62 0.60 N 152 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.55 108.30 7.25 0.30 N 153 9 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A PGN 6 ? ? 126.93 119.70 7.23 1.20 Y 154 9 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 113.29 108.30 4.99 0.30 N 155 9 "C3'" B DC 7 ? ? "O3'" B DC 7 ? ? P B DG 8 ? ? 127.22 119.70 7.52 1.20 Y 156 9 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 111.99 106.00 5.99 0.60 N 157 9 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 117.60 109.80 7.80 1.10 N 158 9 "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 95.71 102.20 -6.49 0.70 N 159 9 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 96.55 105.90 -9.35 0.80 N 160 9 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 125.17 119.00 6.17 0.60 N 161 9 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 113.59 122.90 -9.31 0.60 N 162 9 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 114.33 118.60 -4.27 0.60 N 163 9 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 113.75 108.30 5.45 0.30 N 164 10 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 110.26 106.00 4.26 0.60 N 165 10 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 122.79 119.00 3.79 0.60 N 166 10 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.10 122.90 -5.80 0.60 N 167 10 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? 110.05 106.00 4.05 0.60 N 168 10 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.80 108.30 6.50 0.30 N 169 10 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 112.45 108.30 4.15 0.30 N 170 10 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.57 108.30 3.27 0.30 N 171 10 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 118.70 109.80 8.90 1.10 N 172 10 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? "C2'" B DT 9 ? ? 97.90 105.90 -8.00 0.80 N 173 10 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 110.13 108.30 1.83 0.30 N 174 10 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 125.06 119.00 6.06 0.60 N 175 10 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 113.99 122.90 -8.91 0.60 N 176 10 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 114.51 118.60 -4.09 0.60 N 177 10 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 114.41 108.30 6.11 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP C 14 ? ? 29.86 -116.07 2 2 TRP C 14 ? ? -146.18 -81.96 3 2 LYS C 15 ? ? -161.40 107.05 4 3 TRP C 14 ? ? -163.00 87.83 5 3 LYS C 15 ? ? 28.25 69.79 6 4 TRP C 14 ? ? -162.11 75.15 7 4 LYS C 15 ? ? 30.57 71.02 8 5 LYS C 15 ? ? -49.64 77.94 9 6 TRP C 14 ? ? -59.19 176.93 10 7 TRP C 14 ? ? -46.42 85.09 11 7 LYS C 15 ? ? 21.43 75.54 12 8 TRP C 14 ? ? 5.79 70.33 13 8 LYS C 15 ? ? 17.33 81.55 14 9 TRP C 14 ? ? 15.93 64.46 15 9 LYS C 15 ? ? 9.24 88.95 16 10 TRP C 14 ? ? 60.55 -100.99 17 10 LYS C 15 ? ? -157.29 18.87 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 1 ? ? 0.102 'SIDE CHAIN' 2 1 DA B 10 ? ? 0.078 'SIDE CHAIN' 3 1 DG B 11 ? ? 0.060 'SIDE CHAIN' 4 1 DC B 12 ? ? 0.096 'SIDE CHAIN' 5 2 DG B 11 ? ? 0.057 'SIDE CHAIN' 6 3 DA B 10 ? ? 0.081 'SIDE CHAIN' 7 3 DG B 11 ? ? 0.072 'SIDE CHAIN' 8 4 DC B 7 ? ? 0.063 'SIDE CHAIN' 9 4 DA B 10 ? ? 0.090 'SIDE CHAIN' 10 4 DG B 11 ? ? 0.095 'SIDE CHAIN' 11 5 DA B 10 ? ? 0.066 'SIDE CHAIN' 12 5 DG B 11 ? ? 0.058 'SIDE CHAIN' 13 5 DC B 12 ? ? 0.080 'SIDE CHAIN' 14 6 DG A 1 ? ? 0.075 'SIDE CHAIN' 15 6 DA B 10 ? ? 0.070 'SIDE CHAIN' 16 6 DG B 11 ? ? 0.070 'SIDE CHAIN' 17 6 DC B 12 ? ? 0.088 'SIDE CHAIN' 18 7 DG A 1 ? ? 0.073 'SIDE CHAIN' 19 7 DG B 11 ? ? 0.061 'SIDE CHAIN' 20 7 DC B 12 ? ? 0.096 'SIDE CHAIN' 21 8 DT B 9 ? ? 0.071 'SIDE CHAIN' 22 8 DA B 10 ? ? 0.080 'SIDE CHAIN' 23 8 DG B 11 ? ? 0.079 'SIDE CHAIN' 24 9 DG A 1 ? ? 0.067 'SIDE CHAIN' 25 9 DT B 9 ? ? 0.063 'SIDE CHAIN' 26 9 DA B 10 ? ? 0.107 'SIDE CHAIN' 27 9 DG B 11 ? ? 0.080 'SIDE CHAIN' 28 10 DG A 1 ? ? 0.090 'SIDE CHAIN' 29 10 DA B 10 ? ? 0.082 'SIDE CHAIN' 30 10 DG B 11 ? ? 0.060 'SIDE CHAIN' 31 10 DC B 12 ? ? 0.134 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 4 "C4'" ? A DG 1 ? 'WRONG HAND' . 2 4 CA ? C LYS 13 ? 'WRONG HAND' . 3 4 CA ? C LYS 15 ? 'WRONG HAND' . 4 6 CA ? C ALA 17 ? 'WRONG HAND' . 5 8 "C4'" ? A DC 5 ? 'WRONG HAND' . 6 9 CA ? C ALA 17 ? 'WRONG HAND' . 7 10 CA ? C TRP 14 ? 'WRONG HAND' . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 DA OP3 O N N 21 DA P P N N 22 DA OP1 O N N 23 DA OP2 O N N 24 DA "O5'" O N N 25 DA "C5'" C N N 26 DA "C4'" C N R 27 DA "O4'" O N N 28 DA "C3'" C N S 29 DA "O3'" O N N 30 DA "C2'" C N N 31 DA "C1'" C N R 32 DA N9 N Y N 33 DA C8 C Y N 34 DA N7 N Y N 35 DA C5 C Y N 36 DA C6 C Y N 37 DA N6 N N N 38 DA N1 N Y N 39 DA C2 C Y N 40 DA N3 N Y N 41 DA C4 C Y N 42 DA HOP3 H N N 43 DA HOP2 H N N 44 DA "H5'" H N N 45 DA "H5''" H N N 46 DA "H4'" H N N 47 DA "H3'" H N N 48 DA "HO3'" H N N 49 DA "H2'" H N N 50 DA "H2''" H N N 51 DA "H1'" H N N 52 DA H8 H N N 53 DA H61 H N N 54 DA H62 H N N 55 DA H2 H N N 56 DC OP3 O N N 57 DC P P N N 58 DC OP1 O N N 59 DC OP2 O N N 60 DC "O5'" O N N 61 DC "C5'" C N N 62 DC "C4'" C N R 63 DC "O4'" O N N 64 DC "C3'" C N S 65 DC "O3'" O N N 66 DC "C2'" C N N 67 DC "C1'" C N R 68 DC N1 N N N 69 DC C2 C N N 70 DC O2 O N N 71 DC N3 N N N 72 DC C4 C N N 73 DC N4 N N N 74 DC C5 C N N 75 DC C6 C N N 76 DC HOP3 H N N 77 DC HOP2 H N N 78 DC "H5'" H N N 79 DC "H5''" H N N 80 DC "H4'" H N N 81 DC "H3'" H N N 82 DC "HO3'" H N N 83 DC "H2'" H N N 84 DC "H2''" H N N 85 DC "H1'" H N N 86 DC H41 H N N 87 DC H42 H N N 88 DC H5 H N N 89 DC H6 H N N 90 DG OP3 O N N 91 DG P P N N 92 DG OP1 O N N 93 DG OP2 O N N 94 DG "O5'" O N N 95 DG "C5'" C N N 96 DG "C4'" C N R 97 DG "O4'" O N N 98 DG "C3'" C N S 99 DG "O3'" O N N 100 DG "C2'" C N N 101 DG "C1'" C N R 102 DG N9 N Y N 103 DG C8 C Y N 104 DG N7 N Y N 105 DG C5 C Y N 106 DG C6 C N N 107 DG O6 O N N 108 DG N1 N N N 109 DG C2 C N N 110 DG N2 N N N 111 DG N3 N N N 112 DG C4 C Y N 113 DG HOP3 H N N 114 DG HOP2 H N N 115 DG "H5'" H N N 116 DG "H5''" H N N 117 DG "H4'" H N N 118 DG "H3'" H N N 119 DG "HO3'" H N N 120 DG "H2'" H N N 121 DG "H2''" H N N 122 DG "H1'" H N N 123 DG H8 H N N 124 DG H1 H N N 125 DG H21 H N N 126 DG H22 H N N 127 DT OP3 O N N 128 DT P P N N 129 DT OP1 O N N 130 DT OP2 O N N 131 DT "O5'" O N N 132 DT "C5'" C N N 133 DT "C4'" C N R 134 DT "O4'" O N N 135 DT "C3'" C N S 136 DT "O3'" O N N 137 DT "C2'" C N N 138 DT "C1'" C N R 139 DT N1 N N N 140 DT C2 C N N 141 DT O2 O N N 142 DT N3 N N N 143 DT C4 C N N 144 DT O4 O N N 145 DT C5 C N N 146 DT C7 C N N 147 DT C6 C N N 148 DT HOP3 H N N 149 DT HOP2 H N N 150 DT "H5'" H N N 151 DT "H5''" H N N 152 DT "H4'" H N N 153 DT "H3'" H N N 154 DT "HO3'" H N N 155 DT "H2'" H N N 156 DT "H2''" H N N 157 DT "H1'" H N N 158 DT H3 H N N 159 DT H71 H N N 160 DT H72 H N N 161 DT H73 H N N 162 DT H6 H N N 163 HSE N N N N 164 HSE CA C N S 165 HSE C C N N 166 HSE C3 C N N 167 HSE O O N N 168 HSE OXT O N N 169 HSE C4 C N N 170 HSE O3 O N N 171 HSE H H N N 172 HSE H2 H N N 173 HSE HA H N N 174 HSE H31 H N N 175 HSE H32 H N N 176 HSE HXT H N N 177 HSE H41 H N N 178 HSE H42 H N N 179 HSE HO3 H N N 180 LYS N N N N 181 LYS CA C N S 182 LYS C C N N 183 LYS O O N N 184 LYS CB C N N 185 LYS CG C N N 186 LYS CD C N N 187 LYS CE C N N 188 LYS NZ N N N 189 LYS OXT O N N 190 LYS H H N N 191 LYS H2 H N N 192 LYS HA H N N 193 LYS HB2 H N N 194 LYS HB3 H N N 195 LYS HG2 H N N 196 LYS HG3 H N N 197 LYS HD2 H N N 198 LYS HD3 H N N 199 LYS HE2 H N N 200 LYS HE3 H N N 201 LYS HZ1 H N N 202 LYS HZ2 H N N 203 LYS HZ3 H N N 204 LYS HXT H N N 205 PGN P1 P N N 206 PGN O4P O N N 207 PGN O5P O N N 208 PGN O6P O N N 209 PGN P P N N 210 PGN OP1 O N N 211 PGN OP2 O N N 212 PGN OP3 O N N 213 PGN "O5'" O N N 214 PGN "C5'" C N N 215 PGN "C4'" C N R 216 PGN "O4'" O N N 217 PGN "C3'" C N S 218 PGN "O3'" O N N 219 PGN "C2'" C N N 220 PGN "C1'" C N R 221 PGN N9 N Y N 222 PGN C8 C Y N 223 PGN N7 N Y N 224 PGN C5 C Y N 225 PGN C6 C N N 226 PGN O6 O N N 227 PGN N1 N N N 228 PGN C2 C N N 229 PGN N2 N N N 230 PGN N3 N N N 231 PGN C4 C Y N 232 PGN HOP5 H N N 233 PGN HOP6 H N N 234 PGN HOP2 H N N 235 PGN HOP3 H N N 236 PGN "H5'" H N N 237 PGN "H5''" H N N 238 PGN "H4'" H N N 239 PGN "H3'" H N N 240 PGN "H2'" H N N 241 PGN "H2''" H N N 242 PGN "H1'" H N N 243 PGN H8 H N N 244 PGN HN1 H N N 245 PGN HN21 H N N 246 PGN HN22 H N N 247 TRP N N N N 248 TRP CA C N S 249 TRP C C N N 250 TRP O O N N 251 TRP CB C N N 252 TRP CG C Y N 253 TRP CD1 C Y N 254 TRP CD2 C Y N 255 TRP NE1 N Y N 256 TRP CE2 C Y N 257 TRP CE3 C Y N 258 TRP CZ2 C Y N 259 TRP CZ3 C Y N 260 TRP CH2 C Y N 261 TRP OXT O N N 262 TRP H H N N 263 TRP H2 H N N 264 TRP HA H N N 265 TRP HB2 H N N 266 TRP HB3 H N N 267 TRP HD1 H N N 268 TRP HE1 H N N 269 TRP HE3 H N N 270 TRP HZ2 H N N 271 TRP HZ3 H N N 272 TRP HH2 H N N 273 TRP HXT H N N 274 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 DA OP3 P sing N N 19 DA OP3 HOP3 sing N N 20 DA P OP1 doub N N 21 DA P OP2 sing N N 22 DA P "O5'" sing N N 23 DA OP2 HOP2 sing N N 24 DA "O5'" "C5'" sing N N 25 DA "C5'" "C4'" sing N N 26 DA "C5'" "H5'" sing N N 27 DA "C5'" "H5''" sing N N 28 DA "C4'" "O4'" sing N N 29 DA "C4'" "C3'" sing N N 30 DA "C4'" "H4'" sing N N 31 DA "O4'" "C1'" sing N N 32 DA "C3'" "O3'" sing N N 33 DA "C3'" "C2'" sing N N 34 DA "C3'" "H3'" sing N N 35 DA "O3'" "HO3'" sing N N 36 DA "C2'" "C1'" sing N N 37 DA "C2'" "H2'" sing N N 38 DA "C2'" "H2''" sing N N 39 DA "C1'" N9 sing N N 40 DA "C1'" "H1'" sing N N 41 DA N9 C8 sing Y N 42 DA N9 C4 sing Y N 43 DA C8 N7 doub Y N 44 DA C8 H8 sing N N 45 DA N7 C5 sing Y N 46 DA C5 C6 sing Y N 47 DA C5 C4 doub Y N 48 DA C6 N6 sing N N 49 DA C6 N1 doub Y N 50 DA N6 H61 sing N N 51 DA N6 H62 sing N N 52 DA N1 C2 sing Y N 53 DA C2 N3 doub Y N 54 DA C2 H2 sing N N 55 DA N3 C4 sing Y N 56 DC OP3 P sing N N 57 DC OP3 HOP3 sing N N 58 DC P OP1 doub N N 59 DC P OP2 sing N N 60 DC P "O5'" sing N N 61 DC OP2 HOP2 sing N N 62 DC "O5'" "C5'" sing N N 63 DC "C5'" "C4'" sing N N 64 DC "C5'" "H5'" sing N N 65 DC "C5'" "H5''" sing N N 66 DC "C4'" "O4'" sing N N 67 DC "C4'" "C3'" sing N N 68 DC "C4'" "H4'" sing N N 69 DC "O4'" "C1'" sing N N 70 DC "C3'" "O3'" sing N N 71 DC "C3'" "C2'" sing N N 72 DC "C3'" "H3'" sing N N 73 DC "O3'" "HO3'" sing N N 74 DC "C2'" "C1'" sing N N 75 DC "C2'" "H2'" sing N N 76 DC "C2'" "H2''" sing N N 77 DC "C1'" N1 sing N N 78 DC "C1'" "H1'" sing N N 79 DC N1 C2 sing N N 80 DC N1 C6 sing N N 81 DC C2 O2 doub N N 82 DC C2 N3 sing N N 83 DC N3 C4 doub N N 84 DC C4 N4 sing N N 85 DC C4 C5 sing N N 86 DC N4 H41 sing N N 87 DC N4 H42 sing N N 88 DC C5 C6 doub N N 89 DC C5 H5 sing N N 90 DC C6 H6 sing N N 91 DG OP3 P sing N N 92 DG OP3 HOP3 sing N N 93 DG P OP1 doub N N 94 DG P OP2 sing N N 95 DG P "O5'" sing N N 96 DG OP2 HOP2 sing N N 97 DG "O5'" "C5'" sing N N 98 DG "C5'" "C4'" sing N N 99 DG "C5'" "H5'" sing N N 100 DG "C5'" "H5''" sing N N 101 DG "C4'" "O4'" sing N N 102 DG "C4'" "C3'" sing N N 103 DG "C4'" "H4'" sing N N 104 DG "O4'" "C1'" sing N N 105 DG "C3'" "O3'" sing N N 106 DG "C3'" "C2'" sing N N 107 DG "C3'" "H3'" sing N N 108 DG "O3'" "HO3'" sing N N 109 DG "C2'" "C1'" sing N N 110 DG "C2'" "H2'" sing N N 111 DG "C2'" "H2''" sing N N 112 DG "C1'" N9 sing N N 113 DG "C1'" "H1'" sing N N 114 DG N9 C8 sing Y N 115 DG N9 C4 sing Y N 116 DG C8 N7 doub Y N 117 DG C8 H8 sing N N 118 DG N7 C5 sing Y N 119 DG C5 C6 sing N N 120 DG C5 C4 doub Y N 121 DG C6 O6 doub N N 122 DG C6 N1 sing N N 123 DG N1 C2 sing N N 124 DG N1 H1 sing N N 125 DG C2 N2 sing N N 126 DG C2 N3 doub N N 127 DG N2 H21 sing N N 128 DG N2 H22 sing N N 129 DG N3 C4 sing N N 130 DT OP3 P sing N N 131 DT OP3 HOP3 sing N N 132 DT P OP1 doub N N 133 DT P OP2 sing N N 134 DT P "O5'" sing N N 135 DT OP2 HOP2 sing N N 136 DT "O5'" "C5'" sing N N 137 DT "C5'" "C4'" sing N N 138 DT "C5'" "H5'" sing N N 139 DT "C5'" "H5''" sing N N 140 DT "C4'" "O4'" sing N N 141 DT "C4'" "C3'" sing N N 142 DT "C4'" "H4'" sing N N 143 DT "O4'" "C1'" sing N N 144 DT "C3'" "O3'" sing N N 145 DT "C3'" "C2'" sing N N 146 DT "C3'" "H3'" sing N N 147 DT "O3'" "HO3'" sing N N 148 DT "C2'" "C1'" sing N N 149 DT "C2'" "H2'" sing N N 150 DT "C2'" "H2''" sing N N 151 DT "C1'" N1 sing N N 152 DT "C1'" "H1'" sing N N 153 DT N1 C2 sing N N 154 DT N1 C6 sing N N 155 DT C2 O2 doub N N 156 DT C2 N3 sing N N 157 DT N3 C4 sing N N 158 DT N3 H3 sing N N 159 DT C4 O4 doub N N 160 DT C4 C5 sing N N 161 DT C5 C7 sing N N 162 DT C5 C6 doub N N 163 DT C7 H71 sing N N 164 DT C7 H72 sing N N 165 DT C7 H73 sing N N 166 DT C6 H6 sing N N 167 HSE N CA sing N N 168 HSE N H sing N N 169 HSE N H2 sing N N 170 HSE CA C sing N N 171 HSE CA C3 sing N N 172 HSE CA HA sing N N 173 HSE C O doub N N 174 HSE C OXT sing N N 175 HSE C3 C4 sing N N 176 HSE C3 H31 sing N N 177 HSE C3 H32 sing N N 178 HSE OXT HXT sing N N 179 HSE C4 O3 sing N N 180 HSE C4 H41 sing N N 181 HSE C4 H42 sing N N 182 HSE O3 HO3 sing N N 183 LYS N CA sing N N 184 LYS N H sing N N 185 LYS N H2 sing N N 186 LYS CA C sing N N 187 LYS CA CB sing N N 188 LYS CA HA sing N N 189 LYS C O doub N N 190 LYS C OXT sing N N 191 LYS CB CG sing N N 192 LYS CB HB2 sing N N 193 LYS CB HB3 sing N N 194 LYS CG CD sing N N 195 LYS CG HG2 sing N N 196 LYS CG HG3 sing N N 197 LYS CD CE sing N N 198 LYS CD HD2 sing N N 199 LYS CD HD3 sing N N 200 LYS CE NZ sing N N 201 LYS CE HE2 sing N N 202 LYS CE HE3 sing N N 203 LYS NZ HZ1 sing N N 204 LYS NZ HZ2 sing N N 205 LYS NZ HZ3 sing N N 206 LYS OXT HXT sing N N 207 PGN P1 O4P doub N N 208 PGN P1 O5P sing N N 209 PGN P1 O6P sing N N 210 PGN P1 "O3'" sing N N 211 PGN O5P HOP5 sing N N 212 PGN O6P HOP6 sing N N 213 PGN P OP1 doub N N 214 PGN P OP2 sing N N 215 PGN P OP3 sing N N 216 PGN P "O5'" sing N N 217 PGN OP2 HOP2 sing N N 218 PGN OP3 HOP3 sing N N 219 PGN "O5'" "C5'" sing N N 220 PGN "C5'" "C4'" sing N N 221 PGN "C5'" "H5'" sing N N 222 PGN "C5'" "H5''" sing N N 223 PGN "C4'" "O4'" sing N N 224 PGN "C4'" "C3'" sing N N 225 PGN "C4'" "H4'" sing N N 226 PGN "O4'" "C1'" sing N N 227 PGN "C3'" "O3'" sing N N 228 PGN "C3'" "C2'" sing N N 229 PGN "C3'" "H3'" sing N N 230 PGN "C2'" "C1'" sing N N 231 PGN "C2'" "H2'" sing N N 232 PGN "C2'" "H2''" sing N N 233 PGN "C1'" N9 sing N N 234 PGN "C1'" "H1'" sing N N 235 PGN N9 C8 sing Y N 236 PGN N9 C4 sing Y N 237 PGN C8 N7 doub Y N 238 PGN C8 H8 sing N N 239 PGN N7 C5 sing Y N 240 PGN C5 C6 sing N N 241 PGN C5 C4 doub Y N 242 PGN C6 O6 doub N N 243 PGN C6 N1 sing N N 244 PGN N1 C2 sing N N 245 PGN N1 HN1 sing N N 246 PGN C2 N2 sing N N 247 PGN C2 N3 doub N N 248 PGN N2 HN21 sing N N 249 PGN N2 HN22 sing N N 250 PGN N3 C4 sing N N 251 TRP N CA sing N N 252 TRP N H sing N N 253 TRP N H2 sing N N 254 TRP CA C sing N N 255 TRP CA CB sing N N 256 TRP CA HA sing N N 257 TRP C O doub N N 258 TRP C OXT sing N N 259 TRP CB CG sing N N 260 TRP CB HB2 sing N N 261 TRP CB HB3 sing N N 262 TRP CG CD1 doub Y N 263 TRP CG CD2 sing Y N 264 TRP CD1 NE1 sing Y N 265 TRP CD1 HD1 sing N N 266 TRP CD2 CE2 doub Y N 267 TRP CD2 CE3 sing Y N 268 TRP NE1 CE2 sing Y N 269 TRP NE1 HE1 sing N N 270 TRP CE2 CZ2 sing Y N 271 TRP CE3 CZ3 doub Y N 272 TRP CE3 HE3 sing N N 273 TRP CZ2 CH2 doub Y N 274 TRP CZ2 HZ2 sing N N 275 TRP CZ3 CH2 sing Y N 276 TRP CZ3 HZ3 sing N N 277 TRP CH2 HH2 sing N N 278 TRP OXT HXT sing N N 279 # _ndb_struct_conf_na.entry_id 1J9N _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 6 1_555 -0.108 0.082 0.517 30.001 -8.464 -3.916 1 A_DG1:DC12_B A 1 ? B 12 ? 19 1 1 A DC 2 1_555 B DG 5 1_555 -0.794 -0.125 -0.170 7.462 -17.154 -5.487 2 A_DC2:DG11_B A 2 ? B 11 ? 19 1 1 A DT 3 1_555 B DA 4 1_555 0.526 -0.089 0.144 7.786 -13.154 7.785 3 A_DT3:DA10_B A 3 ? B 10 ? 20 1 1 A DA 4 1_555 B DT 3 1_555 -0.391 -0.097 -0.169 -0.625 -0.822 -3.980 4 A_DA4:DT9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 -0.545 0.053 -0.044 -2.701 -6.364 -0.478 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A PGN 6 1_555 B DC 1 1_555 -0.551 -0.096 -0.311 6.471 -4.447 -1.657 6 A_PGN6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 6 1_555 A DC 2 1_555 B DG 5 1_555 -0.986 -0.705 3.704 0.523 4.622 31.137 -2.261 1.927 3.548 8.550 -0.968 31.474 1 AA_DG1DC2:DG11DC12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DC 2 1_555 B DG 5 1_555 A DT 3 1_555 B DA 4 1_555 0.903 -0.285 3.101 0.178 10.356 35.698 -1.747 -1.397 2.913 16.470 -0.283 37.124 2 AA_DC2DT3:DA10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DT 3 1_555 B DA 4 1_555 A DA 4 1_555 B DT 3 1_555 -0.650 -0.566 3.275 1.819 30.191 26.892 -4.039 1.138 1.767 49.202 -2.964 40.262 3 AA_DT3DA4:DT9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DT 3 1_555 A DC 5 1_555 B DG 2 1_555 0.361 -0.518 3.247 -2.192 5.710 26.845 -2.450 -1.282 3.035 12.100 4.645 27.520 4 AA_DA4DC5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A PGN 6 1_555 B DC 1 1_555 0.018 -0.665 3.041 0.872 17.400 20.717 -5.246 0.154 1.918 40.385 -2.024 27.007 5 AA_DC5PGN6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? #