HEADER TRANSFERASE 11-JUN-01 1JCQ
TITLE CRYSTAL STRUCTURE OF HUMAN PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH
TITLE 2 FARNESYL DIPHOSPHATE AND THE PEPTIDOMIMETIC INHIBITOR L-739,750
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEIN FARNESYLTRANSFERASE, ALPHA SUBUNIT;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: ALPHA SUBUNIT;
COMPND 5 SYNONYM: CAAX FARNESYLTRANSFERASE ALPHA SUBUNIT; RAS PROTEINS
COMPND 6 PRENYLTRANSFERASE ALPHA; FTASE-ALPHA; PRENYL-PROTEIN TRANSFERASE RAM2
COMPND 7 HOMOLOG;
COMPND 8 EC: 2.5.1.-;
COMPND 9 ENGINEERED: YES;
COMPND 10 MUTATION: YES;
COMPND 11 MOL_ID: 2;
COMPND 12 MOLECULE: PROTEIN FARNESYLTRANSFERASE, BETA SUBUNIT;
COMPND 13 CHAIN: B;
COMPND 14 FRAGMENT: BETA SUBUNIT;
COMPND 15 SYNONYM: CAAX FARNESYLTRANSFERASE BETA SUBUNIT; RAS PROTEINS
COMPND 16 PRENYLTRANSFERASE BETA; FTASE-BETA; PRENYL-PROTEIN TRANSFERASE
COMPND 17 DPR1/RAM1 SUBUNIT;
COMPND 18 EC: 2.5.1.-;
COMPND 19 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 MOL_ID: 2;
SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 9 ORGANISM_COMMON: HUMAN;
SOURCE 10 ORGANISM_TAXID: 9606;
SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS FTASE, PFT, PFTASE, FT, FPT, FARNESYLTRANSFERASE, FARNESYL
KEYWDS 2 TRANSFERASE, FARNESYL PROTEIN TRANSFERASE, CAAX, RAS, CANCER, TUMOR
KEYWDS 3 REGRESSION, L-739, 750, PEPTIDOMIMETIC, INHIBITOR, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.B.LONG,P.J.CASEY,L.S.BEESE
REVDAT 4 16-AUG-23 1JCQ 1 HETSYN
REVDAT 3 29-JUL-20 1JCQ 1 COMPND REMARK SEQADV HET
REVDAT 3 2 1 HETNAM FORMUL LINK SITE
REVDAT 3 3 1 ATOM
REVDAT 2 24-FEB-09 1JCQ 1 VERSN
REVDAT 1 02-NOV-01 1JCQ 0
JRNL AUTH S.B.LONG,P.J.HANCOCK,A.M.KRAL,H.W.HELLINGA,L.S.BEESE
JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN PROTEIN FARNESYLTRANSFERASE
JRNL TITL 2 REVEALS THE BASIS FOR INHIBITION BY CAAX TETRAPEPTIDES AND
JRNL TITL 3 THEIR MIMETICS.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 12948 2001
JRNL REFN ISSN 0027-8424
JRNL PMID 11687658
JRNL DOI 10.1073/PNAS.241407898
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH S.B.LONG,P.J.CASEY,L.S.BEESE
REMARK 1 TITL THE BASIS FOR K-RAS4B BINDING SPECIFICITY TO PROTEIN
REMARK 1 TITL 2 FARNESYLTRANSFERASE REVEALED BY 2A RESOLUTION TERNARY
REMARK 1 TITL 3 COMPLEX STRUCTURES
REMARK 1 REF STRUCTURE V. 8 209 2000
REMARK 1 REFN ISSN 0969-2126
REMARK 1 DOI 10.1016/S0969-2126(00)00096-4
REMARK 1 REFERENCE 2
REMARK 1 AUTH H.-W.PARK,S.R.BODULURI,J.F.MOOMAW,P.J.CASEY,L.S.BEESE
REMARK 1 TITL CRYSTAL STRUCTURE OF PROTEIN FARNESYLTRANSFERASE AT 2.25A
REMARK 1 TITL 2 RESOLUTION
REMARK 1 REF SCIENCE V. 275 1800 1997
REMARK 1 REFN ISSN 0036-8075
REMARK 1 DOI 10.1126/SCIENCE.275.5307.1800
REMARK 2
REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.851
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000
REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.0
REMARK 3 NUMBER OF REFLECTIONS : 46863
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.179
REMARK 3 FREE R VALUE : 0.209
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 2341
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 8
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.50
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4305
REMARK 3 BIN R VALUE (WORKING SET) : 0.2500
REMARK 3 BIN FREE R VALUE : 0.2440
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 238
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5898
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 86
REMARK 3 SOLVENT ATOMS : 334
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 45.80
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.10
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25
REMARK 3 ESD FROM SIGMAA (A) : 0.29
REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29
REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.008
REMARK 3 BOND ANGLES (DEGREES) : 1.300
REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.70
REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : 1.210 ; 1.500
REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.080 ; 2.000
REMARK 3 SIDE-CHAIN BOND (A**2) : 2.030 ; 2.000
REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.240 ; 2.500
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : PARHCSDX.PR
REMARK 3 PARAMETER FILE 2 : PARAM19.SOL
REMARK 3 PARAMETER FILE 3 : ACE
REMARK 3 PARAMETER FILE 4 : FPP
REMARK 3 PARAMETER FILE 5 : NULL
REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PR
REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL
REMARK 3 TOPOLOGY FILE 3 : ACE
REMARK 3 TOPOLOGY FILE 4 : FPP
REMARK 3 TOPOLOGY FILE 5 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED
REMARK 4
REMARK 4 1JCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-01.
REMARK 100 THE DEPOSITION ID IS D_1000013630.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 06-NOV-98
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.7
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : NI FILTER
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46302
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300
REMARK 200 RESOLUTION RANGE LOW (A) : 35.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 87.5
REMARK 200 DATA REDUNDANCY : 5.590
REMARK 200 R MERGE (I) : 0.06200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33
REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3
REMARK 200 DATA REDUNDANCY IN SHELL : 2.95
REMARK 200 R MERGE FOR SHELL (I) : 0.19300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.130
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: X-PLOR
REMARK 200 STARTING MODEL: PDB ENTRY 1D8D
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 61.32
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM ACETATE, DTT, TRIS
REMARK 280 -HCL, PH 5.7, VAPOR DIFFUSION, HANGING DROP AT 290K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.61400
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.22800
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.42100
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.03500
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 10.80700
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: THE BIOLOGICAL UNIT OF PROTEIN FARNESYLTRANSFERASE (FTASE)
REMARK 300 IS A HETERODIMER OF ALPHA AND BETA SUBUNITS. THERE IS ONE FTASE
REMARK 300 HETERODIMER PER ASYMMETRIC UNIT.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 9610 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 27820 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 THR A 4
REMARK 465 GLU A 5
REMARK 465 GLY A 6
REMARK 465 VAL A 7
REMARK 465 GLY A 8
REMARK 465 GLU A 9
REMARK 465 ALA A 10
REMARK 465 ALA A 11
REMARK 465 GLN A 12
REMARK 465 GLY A 13
REMARK 465 GLY A 14
REMARK 465 GLU A 15
REMARK 465 PRO A 16
REMARK 465 GLY A 17
REMARK 465 GLN A 18
REMARK 465 PRO A 19
REMARK 465 ALA A 20
REMARK 465 GLN A 21
REMARK 465 PRO A 22
REMARK 465 PRO A 23
REMARK 465 PRO A 24
REMARK 465 GLN A 25
REMARK 465 PRO A 26
REMARK 465 HIS A 27
REMARK 465 PRO A 28
REMARK 465 PRO A 29
REMARK 465 PRO A 30
REMARK 465 PRO A 31
REMARK 465 GLN A 32
REMARK 465 GLN A 33
REMARK 465 GLN A 34
REMARK 465 HIS A 35
REMARK 465 LYS A 36
REMARK 465 GLU A 37
REMARK 465 GLU A 38
REMARK 465 MET A 39
REMARK 465 ALA A 40
REMARK 465 ALA A 41
REMARK 465 GLU A 42
REMARK 465 ALA A 43
REMARK 465 GLY A 44
REMARK 465 GLU A 45
REMARK 465 ALA A 46
REMARK 465 VAL A 47
REMARK 465 ALA A 48
REMARK 465 SER A 49
REMARK 465 PRO A 50
REMARK 465 MET A 51
REMARK 465 ASP A 52
REMARK 465 ASP A 53
REMARK 465 GLY A 54
REMARK 465 SER A 368
REMARK 465 THR A 369
REMARK 465 GLU A 370
REMARK 465 ASN A 371
REMARK 465 ASP A 372
REMARK 465 SER A 373
REMARK 465 PRO A 374
REMARK 465 THR A 375
REMARK 465 ASN A 376
REMARK 465 VAL A 377
REMARK 465 GLN A 378
REMARK 465 GLN A 379
REMARK 465 GLU A 380
REMARK 465 GLU A 381
REMARK 465 PHE A 382
REMARK 465 MET B 1
REMARK 465 ALA B 2
REMARK 465 SER B 3
REMARK 465 PRO B 4
REMARK 465 SER B 5
REMARK 465 SER B 6
REMARK 465 PHE B 7
REMARK 465 THR B 8
REMARK 465 TYR B 9
REMARK 465 TYR B 10
REMARK 465 CYS B 11
REMARK 465 PRO B 12
REMARK 465 PRO B 13
REMARK 465 SER B 14
REMARK 465 GLU B 425
REMARK 465 LEU B 426
REMARK 465 LYS B 427
REMARK 465 ASP B 428
REMARK 465 GLU B 429
REMARK 465 THR B 430
REMARK 465 SER B 431
REMARK 465 ALA B 432
REMARK 465 GLU B 433
REMARK 465 PRO B 434
REMARK 465 ALA B 435
REMARK 465 THR B 436
REMARK 465 ASP B 437
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 LEU B 308 CA - CB - CG ANGL. DEV. = -14.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 71 0.09 -64.05
REMARK 500 VAL A 88 36.61 38.40
REMARK 500 LYS A 164 71.19 -102.32
REMARK 500 ALA A 197 -1.71 -58.77
REMARK 500 THR A 247 -89.88 -114.77
REMARK 500 HIS A 306 11.50 -147.81
REMARK 500 ASN A 325 43.55 -109.26
REMARK 500 GLU A 347 -61.81 -124.09
REMARK 500 ASP A 349 47.88 -157.96
REMARK 500 ASN B 65 -124.98 59.39
REMARK 500 GLN B 74 60.04 -64.45
REMARK 500 GLN B 318 31.20 -87.33
REMARK 500 SER B 326 -5.57 -149.89
REMARK 500 HIS B 383 113.80 -163.75
REMARK 500 PRO B 421 113.41 -36.90
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B1001 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 297 OD1
REMARK 620 2 ASP B 297 OD2 53.3
REMARK 620 3 CYS B 299 SG 92.0 104.0
REMARK 620 4 HIS B 362 NE2 79.8 115.8 120.5
REMARK 620 5 739 B3012 SCC 150.2 102.3 112.5 100.4
REMARK 620 N 1 2 3 4
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1JCR RELATED DB: PDB
REMARK 900 RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH THE NON-SUBSTRATE
REMARK 900 TETRAPEPTIDE INHIBITOR CVFM AND FARNESYL DIPHOSPHATE SUBSTRATE
REMARK 900 RELATED ID: 1JCS RELATED DB: PDB
REMARK 900 RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH THE PEPTIDE
REMARK 900 SUBSTRATE TKCVFM AND AN ANALOG OF FARNESYL DIPHOSPHATE
REMARK 900 RELATED ID: 1D8D RELATED DB: PDB
REMARK 900 PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A K-RAS4B PEPTIDE
REMARK 900 SUBSTRATE AND FARNESYL DIPHOSPHATE ANALOG
REMARK 900 RELATED ID: 1FT1 RELATED DB: PDB
REMARK 900 UNLIGANDED PROTEIN FARENESYLTRANSFERASE
DBREF 1JCQ A 1 379 UNP P49354 PFTA_HUMAN 1 379
DBREF 1JCQ B 1 437 UNP P49356 PFTB_HUMAN 1 437
SEQADV 1JCQ GLU A 380 UNP P49354 INSERTION
SEQADV 1JCQ GLU A 381 UNP P49354 INSERTION
SEQADV 1JCQ PHE A 382 UNP P49354 INSERTION
SEQRES 1 A 382 MET ALA ALA THR GLU GLY VAL GLY GLU ALA ALA GLN GLY
SEQRES 2 A 382 GLY GLU PRO GLY GLN PRO ALA GLN PRO PRO PRO GLN PRO
SEQRES 3 A 382 HIS PRO PRO PRO PRO GLN GLN GLN HIS LYS GLU GLU MET
SEQRES 4 A 382 ALA ALA GLU ALA GLY GLU ALA VAL ALA SER PRO MET ASP
SEQRES 5 A 382 ASP GLY PHE VAL SER LEU ASP SER PRO SER TYR VAL LEU
SEQRES 6 A 382 TYR ARG ASP ARG ALA GLU TRP ALA ASP ILE ASP PRO VAL
SEQRES 7 A 382 PRO GLN ASN ASP GLY PRO ASN PRO VAL VAL GLN ILE ILE
SEQRES 8 A 382 TYR SER ASP LYS PHE ARG ASP VAL TYR ASP TYR PHE ARG
SEQRES 9 A 382 ALA VAL LEU GLN ARG ASP GLU ARG SER GLU ARG ALA PHE
SEQRES 10 A 382 LYS LEU THR ARG ASP ALA ILE GLU LEU ASN ALA ALA ASN
SEQRES 11 A 382 TYR THR VAL TRP HIS PHE ARG ARG VAL LEU LEU LYS SER
SEQRES 12 A 382 LEU GLN LYS ASP LEU HIS GLU GLU MET ASN TYR ILE THR
SEQRES 13 A 382 ALA ILE ILE GLU GLU GLN PRO LYS ASN TYR GLN VAL TRP
SEQRES 14 A 382 HIS HIS ARG ARG VAL LEU VAL GLU TRP LEU ARG ASP PRO
SEQRES 15 A 382 SER GLN GLU LEU GLU PHE ILE ALA ASP ILE LEU ASN GLN
SEQRES 16 A 382 ASP ALA LYS ASN TYR HIS ALA TRP GLN HIS ARG GLN TRP
SEQRES 17 A 382 VAL ILE GLN GLU PHE LYS LEU TRP ASP ASN GLU LEU GLN
SEQRES 18 A 382 TYR VAL ASP GLN LEU LEU LYS GLU ASP VAL ARG ASN ASN
SEQRES 19 A 382 SER VAL TRP ASN GLN ARG TYR PHE VAL ILE SER ASN THR
SEQRES 20 A 382 THR GLY TYR ASN ASP ARG ALA VAL LEU GLU ARG GLU VAL
SEQRES 21 A 382 GLN TYR THR LEU GLU MET ILE LYS LEU VAL PRO HIS ASN
SEQRES 22 A 382 GLU SER ALA TRP ASN TYR LEU LYS GLY ILE LEU GLN ASP
SEQRES 23 A 382 ARG GLY LEU SER LYS TYR PRO ASN LEU LEU ASN GLN LEU
SEQRES 24 A 382 LEU ASP LEU GLN PRO SER HIS SER SER PRO TYR LEU ILE
SEQRES 25 A 382 ALA PHE LEU VAL ASP ILE TYR GLU ASP MET LEU GLU ASN
SEQRES 26 A 382 GLN CYS ASP ASN LYS GLU ASP ILE LEU ASN LYS ALA LEU
SEQRES 27 A 382 GLU LEU CYS GLU ILE LEU ALA LYS GLU LYS ASP THR ILE
SEQRES 28 A 382 ARG LYS GLU TYR TRP ARG TYR ILE GLY ARG SER LEU GLN
SEQRES 29 A 382 SER LYS HIS SER THR GLU ASN ASP SER PRO THR ASN VAL
SEQRES 30 A 382 GLN GLN GLU GLU PHE
SEQRES 1 B 437 MET ALA SER PRO SER SER PHE THR TYR TYR CYS PRO PRO
SEQRES 2 B 437 SER SER SER PRO VAL TRP SER GLU PRO LEU TYR SER LEU
SEQRES 3 B 437 ARG PRO GLU HIS ALA ARG GLU ARG LEU GLN ASP ASP SER
SEQRES 4 B 437 VAL GLU THR VAL THR SER ILE GLU GLN ALA LYS VAL GLU
SEQRES 5 B 437 GLU LYS ILE GLN GLU VAL PHE SER SER TYR LYS PHE ASN
SEQRES 6 B 437 HIS LEU VAL PRO ARG LEU VAL LEU GLN ARG GLU LYS HIS
SEQRES 7 B 437 PHE HIS TYR LEU LYS ARG GLY LEU ARG GLN LEU THR ASP
SEQRES 8 B 437 ALA TYR GLU CYS LEU ASP ALA SER ARG PRO TRP LEU CYS
SEQRES 9 B 437 TYR TRP ILE LEU HIS SER LEU GLU LEU LEU ASP GLU PRO
SEQRES 10 B 437 ILE PRO GLN ILE VAL ALA THR ASP VAL CYS GLN PHE LEU
SEQRES 11 B 437 GLU LEU CYS GLN SER PRO GLU GLY GLY PHE GLY GLY GLY
SEQRES 12 B 437 PRO GLY GLN TYR PRO HIS LEU ALA PRO THR TYR ALA ALA
SEQRES 13 B 437 VAL ASN ALA LEU CYS ILE ILE GLY THR GLU GLU ALA TYR
SEQRES 14 B 437 ASP ILE ILE ASN ARG GLU LYS LEU LEU GLN TYR LEU TYR
SEQRES 15 B 437 SER LEU LYS GLN PRO ASP GLY SER PHE LEU MET HIS VAL
SEQRES 16 B 437 GLY GLY GLU VAL ASP VAL ARG SER ALA TYR CYS ALA ALA
SEQRES 17 B 437 SER VAL ALA SER LEU THR ASN ILE ILE THR PRO ASP LEU
SEQRES 18 B 437 PHE GLU GLY THR ALA GLU TRP ILE ALA ARG CYS GLN ASN
SEQRES 19 B 437 TRP GLU GLY GLY ILE GLY GLY VAL PRO GLY MET GLU ALA
SEQRES 20 B 437 HIS GLY GLY TYR THR PHE CYS GLY LEU ALA ALA LEU VAL
SEQRES 21 B 437 ILE LEU LYS ARG GLU ARG SER LEU ASN LEU LYS SER LEU
SEQRES 22 B 437 LEU GLN TRP VAL THR SER ARG GLN MET ARG PHE GLU GLY
SEQRES 23 B 437 GLY PHE GLN GLY ARG CYS ASN LYS LEU VAL ASP GLY CYS
SEQRES 24 B 437 TYR SER PHE TRP GLN ALA GLY LEU LEU PRO LEU LEU HIS
SEQRES 25 B 437 ARG ALA LEU HIS ALA GLN GLY ASP PRO ALA LEU SER MET
SEQRES 26 B 437 SER HIS TRP MET PHE HIS GLN GLN ALA LEU GLN GLU TYR
SEQRES 27 B 437 ILE LEU MET CYS CYS GLN CYS PRO ALA GLY GLY LEU LEU
SEQRES 28 B 437 ASP LYS PRO GLY LYS SER ARG ASP PHE TYR HIS THR CYS
SEQRES 29 B 437 TYR CYS LEU SER GLY LEU SER ILE ALA GLN HIS PHE GLY
SEQRES 30 B 437 SER GLY ALA MET LEU HIS ASP VAL VAL LEU GLY VAL PRO
SEQRES 31 B 437 GLU ASN ALA LEU GLN PRO THR HIS PRO VAL TYR ASN ILE
SEQRES 32 B 437 GLY PRO ASP LYS VAL ILE GLN ALA THR THR TYR PHE LEU
SEQRES 33 B 437 GLN LYS PRO VAL PRO GLY PHE GLU GLU LEU LYS ASP GLU
SEQRES 34 B 437 THR SER ALA GLU PRO ALA THR ASP
HET GLC C 1 11
HET FRU C 2 12
HET ACY A3002 4
HET ZN B1001 1
HET FPP B3011 24
HET 739 B3012 34
HETNAM GLC ALPHA-D-GLUCOPYRANOSE
HETNAM FRU BETA-D-FRUCTOFURANOSE
HETNAM ACY ACETIC ACID
HETNAM ZN ZINC ION
HETNAM FPP FARNESYL DIPHOSPHATE
HETNAM 739 2(S)-{2(S)-[2(R)-AMINO-3-MERCAPTO]PROPYLAMINO-3(S)-
HETNAM 2 739 METHYL}PENTYLOXY-3-PHENYLPROPIONYLMETHIONINE SULFONE
HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE
HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE
HETSYN 739 L-739,750
FORMUL 3 GLC C6 H12 O6
FORMUL 3 FRU C6 H12 O6
FORMUL 4 ACY C2 H4 O2
FORMUL 5 ZN ZN 2+
FORMUL 6 FPP C15 H28 O7 P2
FORMUL 7 739 C23 H39 N3 O6 S2
FORMUL 8 HOH *334(H2 O)
HELIX 1 1 LEU A 65 ARG A 69 5 5
HELIX 2 2 ARG A 69 ALA A 73 5 5
HELIX 3 3 SER A 93 ASP A 110 1 18
HELIX 4 4 SER A 113 ASN A 127 1 15
HELIX 5 5 ASN A 130 LEU A 144 1 15
HELIX 6 6 ASP A 147 GLN A 162 1 16
HELIX 7 7 ASN A 165 ARG A 180 1 16
HELIX 8 8 GLN A 184 ASP A 196 1 13
HELIX 9 9 ASN A 199 PHE A 213 1 15
HELIX 10 10 ASN A 218 ASP A 230 1 13
HELIX 11 11 ASN A 233 THR A 247 1 15
HELIX 12 12 ASP A 252 VAL A 270 1 19
HELIX 13 13 ASN A 273 GLN A 285 1 13
HELIX 14 14 GLY A 288 LYS A 291 5 4
HELIX 15 15 TYR A 292 SER A 307 1 16
HELIX 16 16 SER A 308 ASN A 325 1 18
HELIX 17 17 ASN A 329 GLU A 347 1 19
HELIX 18 18 ASP A 349 ILE A 351 5 3
HELIX 19 19 ARG A 352 HIS A 367 1 16
HELIX 20 20 LEU B 23 ARG B 27 5 5
HELIX 21 21 ARG B 27 ARG B 34 5 8
HELIX 22 22 THR B 42 SER B 61 1 20
HELIX 23 23 GLN B 74 LEU B 86 1 13
HELIX 24 24 THR B 90 ASP B 97 5 8
HELIX 25 25 SER B 99 LEU B 114 1 16
HELIX 26 26 PRO B 119 GLN B 134 1 16
HELIX 27 27 HIS B 149 GLY B 164 1 16
HELIX 28 28 THR B 165 ILE B 172 1 8
HELIX 29 29 ASN B 173 LYS B 185 1 13
HELIX 30 30 ASP B 200 THR B 214 1 15
HELIX 31 31 GLY B 224 GLN B 233 1 10
HELIX 32 32 HIS B 248 LEU B 262 1 15
HELIX 33 33 ARG B 264 LEU B 268 5 5
HELIX 34 34 ASN B 269 ARG B 280 1 12
HELIX 35 35 CYS B 299 GLN B 304 1 6
HELIX 36 36 GLY B 306 GLN B 318 1 13
HELIX 37 37 HIS B 331 CYS B 343 1 13
HELIX 38 38 ASP B 359 GLN B 374 1 16
HELIX 39 39 VAL B 389 ALA B 393 5 5
HELIX 40 40 GLY B 404 GLN B 417 1 14
SHEET 1 A 2 GLN A 89 ILE A 90 0
SHEET 2 A 2 GLN B 88 LEU B 89 1 N LEU B 89 O GLN A 89
SHEET 1 B 2 HIS B 375 SER B 378 0
SHEET 2 B 2 MET B 381 ASP B 384 -1 O MET B 381 N SER B 378
LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.45
LINK OD1 ASP B 297 ZN ZN B1001 1555 1555 2.67
LINK OD2 ASP B 297 ZN ZN B1001 1555 1555 1.97
LINK SG CYS B 299 ZN ZN B1001 1555 1555 2.29
LINK NE2 HIS B 362 ZN ZN B1001 1555 1555 2.34
LINK ZN ZN B1001 SCC 739 B3012 1555 1555 2.36
CRYST1 178.476 178.476 64.842 90.00 90.00 120.00 P 61 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005603 0.003235 0.000000 0.00000
SCALE2 0.000000 0.006470 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015422 0.00000