HEADER LYASE 11-JUN-01 1JCT TITLE GLUCARATE DEHYDRATASE, N341L MUTANT ORTHORHOMBIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCARATE DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.2.1.40; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ALPHA/BETA BARREL, ENOLASE SUPERFAMILY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.GULICK,B.K.HUBBARD,J.A.GERLT,I.RAYMENT REVDAT 6 16-AUG-23 1JCT 1 REMARK REVDAT 5 27-OCT-21 1JCT 1 REMARK SEQADV SHEET LINK REVDAT 4 30-MAY-18 1JCT 1 REMARK REVDAT 3 16-NOV-11 1JCT 1 VERSN HETATM REVDAT 2 24-FEB-09 1JCT 1 VERSN REVDAT 1 05-SEP-01 1JCT 0 JRNL AUTH A.M.GULICK,B.K.HUBBARD,J.A.GERLT,I.RAYMENT JRNL TITL EVOLUTION OF ENZYMATIC ACTIVITIES IN THE ENOLASE JRNL TITL 2 SUPERFAMILY: IDENTIFICATION OF THE GENERAL ACID CATALYST IN JRNL TITL 3 THE ACTIVE SITE OF D-GLUCARATE DEHYDRATASE FROM ESCHERICHIA JRNL TITL 4 COLI. JRNL REF BIOCHEMISTRY V. 40 10054 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11513584 JRNL DOI 10.1021/BI010733B REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.M.GULICK,B.K.HUBBARD,J.A.GERLT,I.RAYMENT REMARK 1 TITL EVOLUTION OF ENZYMATIC ACTIVE SITES IN THE ENOLASE REMARK 1 TITL 2 SUPERFAMILY: CRYSTALLOGRAPHIC AND MUTAGENESIS STUDIES OF THE REMARK 1 TITL 3 REACTION CATALYZED BY D-GLUCARATE DEHYDRATASE FROM REMARK 1 TITL 4 ESCHERICHIA COLI. REMARK 1 REF BIOCHEMISTRY V. 39 4590 2000 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI992782I REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 24649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE : 0.4490 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 192 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.50000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 7.70000 REMARK 3 B13 (A**2) : -21.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.53 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.66 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : 0.1 MM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24649 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1EC8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG5000 MONOMETHYLETHER, 50 MM MGCL, REMARK 280 5% ISOPROPANOL, 50 MM HEPPS, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.09250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.09250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.96200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 101.57950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.96200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 101.57950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.09250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.96200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 101.57950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.09250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.96200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 101.57950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.09250 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.09250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 55 CG1 CG2 CD1 REMARK 470 ASP A 105 CG OD1 OD2 REMARK 470 LEU A 106 CG CD1 CD2 REMARK 470 GLN A 229 CG CD OE1 NE2 REMARK 470 THR B 6 OG1 CG2 REMARK 470 VAL B 9 CG1 CG2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 VAL B 154 CG1 CG2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 LYS B 361 CG CD CE NZ REMARK 470 GLU B 381 CG CD OE1 OE2 REMARK 470 LYS B 386 CG CD CE NZ REMARK 470 ILE B 402 CG1 CG2 CD1 REMARK 470 LYS B 409 CG CD CE NZ REMARK 470 GLU B 412 CG CD OE1 OE2 REMARK 470 GLN B 415 CG CD OE1 NE2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 152.11 -47.96 REMARK 500 ASN A 46 34.64 -73.70 REMARK 500 ALA A 92 4.93 -67.65 REMARK 500 ARG A 99 -53.00 165.64 REMARK 500 GLN A 102 -170.16 -58.96 REMARK 500 ARG A 107 -179.10 -63.68 REMARK 500 THR A 108 -84.00 -137.97 REMARK 500 ALA A 159 25.32 -68.26 REMARK 500 PRO A 163 51.15 -68.26 REMARK 500 ARG A 178 0.42 -63.50 REMARK 500 ALA A 182 86.73 -157.55 REMARK 500 ASN A 237 59.08 38.86 REMARK 500 LYS A 253 60.99 -62.20 REMARK 500 ASN A 289 20.91 -153.40 REMARK 500 ALA A 292 51.10 -142.78 REMARK 500 THR A 318 162.31 84.66 REMARK 500 THR A 367 136.99 177.51 REMARK 500 ARG A 377 147.78 170.01 REMARK 500 GLU A 381 74.93 -117.82 REMARK 500 ASN A 439 -8.04 -58.30 REMARK 500 THR B 11 -68.00 -94.54 REMARK 500 MET B 13 116.05 -160.31 REMARK 500 ASP B 95 20.67 -163.83 REMARK 500 THR B 108 -66.73 -98.08 REMARK 500 ASN B 156 98.96 -45.02 REMARK 500 LYS B 158 -7.12 -54.20 REMARK 500 PRO B 161 22.44 -71.43 REMARK 500 ASP B 170 141.60 -29.27 REMARK 500 CYS B 172 104.65 -49.58 REMARK 500 ARG B 178 5.34 -65.84 REMARK 500 GLN B 267 27.25 49.62 REMARK 500 ASN B 289 25.86 -152.38 REMARK 500 THR B 318 135.37 66.59 REMARK 500 ARG B 377 140.94 171.29 REMARK 500 GLU B 381 78.11 -113.01 REMARK 500 ASP B 438 86.59 -162.63 REMARK 500 ASN B 439 -9.25 -48.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 498 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 235 OD1 REMARK 620 2 GLU A 260 OE2 83.9 REMARK 620 3 ASN A 289 OD1 161.3 107.0 REMARK 620 4 GKR A 499 O6A 94.3 161.9 80.0 REMARK 620 5 GKR A 499 O6B 96.8 103.4 95.3 58.8 REMARK 620 6 HOH A 624 O 85.2 112.9 76.6 84.9 143.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 235 OD1 REMARK 620 2 GLU B 260 OE2 91.7 REMARK 620 3 ASN B 289 OD1 156.2 92.5 REMARK 620 4 GKR B 502 O6A 85.6 169.2 94.1 REMARK 620 5 GKR B 502 O6B 120.0 116.3 78.6 57.0 REMARK 620 6 HOH B 619 O 89.8 104.0 66.5 86.4 127.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 498 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GKR A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GKR B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EC7 RELATED DB: PDB REMARK 900 NATIVE GLUCD REMARK 900 RELATED ID: 1EC8 RELATED DB: PDB REMARK 900 GLUCD + 5-KETO-4-DEOXYGLUCARATE REMARK 900 RELATED ID: 1EC9 RELATED DB: PDB REMARK 900 GLUCD + XYLAROHYDROXAMATE REMARK 900 RELATED ID: 1ECQ RELATED DB: PDB REMARK 900 GLUCD + 4-DEOXYGLUCARATE DBREF 1JCT A 1 446 UNP P76637 GUDH_ECOLI 1 446 DBREF 1JCT B 1 446 UNP P76637 GUDH_ECOLI 1 446 SEQADV 1JCT LEU A 341 UNP P76637 ASN 341 ENGINEERED MUTATION SEQADV 1JCT LEU B 341 UNP P76637 ASN 341 ENGINEERED MUTATION SEQRES 1 A 446 MET SER SER GLN PHE THR THR PRO VAL VAL THR GLU MET SEQRES 2 A 446 GLN VAL ILE PRO VAL ALA GLY HIS ASP SER MET LEU MET SEQRES 3 A 446 ASN LEU SER GLY ALA HIS ALA PRO PHE PHE THR ARG ASN SEQRES 4 A 446 ILE VAL ILE ILE LYS ASP ASN SER GLY HIS THR GLY VAL SEQRES 5 A 446 GLY GLU ILE PRO GLY GLY GLU LYS ILE ARG LYS THR LEU SEQRES 6 A 446 GLU ASP ALA ILE PRO LEU VAL VAL GLY LYS THR LEU GLY SEQRES 7 A 446 GLU TYR LYS ASN VAL LEU THR LEU VAL ARG ASN THR PHE SEQRES 8 A 446 ALA ASP ARG ASP ALA GLY GLY ARG GLY LEU GLN THR PHE SEQRES 9 A 446 ASP LEU ARG THR THR ILE HIS VAL VAL THR GLY ILE GLU SEQRES 10 A 446 ALA ALA MET LEU ASP LEU LEU GLY GLN HIS LEU GLY VAL SEQRES 11 A 446 ASN VAL ALA SER LEU LEU GLY ASP GLY GLN GLN ARG SER SEQRES 12 A 446 GLU VAL GLU MET LEU GLY TYR LEU PHE PHE VAL GLY ASN SEQRES 13 A 446 ARG LYS ALA THR PRO LEU PRO TYR GLN SER GLN PRO ASP SEQRES 14 A 446 ASP SER CYS ASP TRP TYR ARG LEU ARG HIS GLU GLU ALA SEQRES 15 A 446 MET THR PRO ASP ALA VAL VAL ARG LEU ALA GLU ALA ALA SEQRES 16 A 446 TYR GLU LYS TYR GLY PHE ASN ASP PHE LYS LEU LYS GLY SEQRES 17 A 446 GLY VAL LEU ALA GLY GLU GLU GLU ALA GLU SER ILE VAL SEQRES 18 A 446 ALA LEU ALA GLN ARG PHE PRO GLN ALA ARG ILE THR LEU SEQRES 19 A 446 ASP PRO ASN GLY ALA TRP SER LEU ASN GLU ALA ILE LYS SEQRES 20 A 446 ILE GLY LYS TYR LEU LYS GLY SER LEU ALA TYR ALA GLU SEQRES 21 A 446 ASP PRO CYS GLY ALA GLU GLN GLY PHE SER GLY ARG GLU SEQRES 22 A 446 VAL MET ALA GLU PHE ARG ARG ALA THR GLY LEU PRO THR SEQRES 23 A 446 ALA THR ASN MET ILE ALA THR ASP TRP ARG GLN MET GLY SEQRES 24 A 446 HIS THR LEU SER LEU GLN SER VAL ASP ILE PRO LEU ALA SEQRES 25 A 446 ASP PRO HIS PHE TRP THR MET GLN GLY SER VAL ARG VAL SEQRES 26 A 446 ALA GLN MET CYS HIS GLU PHE GLY LEU THR TRP GLY SER SEQRES 27 A 446 HIS SER LEU ASN HIS PHE ASP ILE SER LEU ALA MET PHE SEQRES 28 A 446 THR HIS VAL ALA ALA ALA ALA PRO GLY LYS ILE THR ALA SEQRES 29 A 446 ILE ASP THR HIS TRP ILE TRP GLN GLU GLY ASN GLN ARG SEQRES 30 A 446 LEU THR LYS GLU PRO PHE GLU ILE LYS GLY GLY LEU VAL SEQRES 31 A 446 GLN VAL PRO GLU LYS PRO GLY LEU GLY VAL GLU ILE ASP SEQRES 32 A 446 MET ASP GLN VAL MET LYS ALA HIS GLU LEU TYR GLN LYS SEQRES 33 A 446 HIS GLY LEU GLY ALA ARG ASP ASP ALA MET GLY MET GLN SEQRES 34 A 446 TYR LEU ILE PRO GLY TRP THR PHE ASP ASN LYS ARG PRO SEQRES 35 A 446 CYS MET VAL ARG SEQRES 1 B 446 MET SER SER GLN PHE THR THR PRO VAL VAL THR GLU MET SEQRES 2 B 446 GLN VAL ILE PRO VAL ALA GLY HIS ASP SER MET LEU MET SEQRES 3 B 446 ASN LEU SER GLY ALA HIS ALA PRO PHE PHE THR ARG ASN SEQRES 4 B 446 ILE VAL ILE ILE LYS ASP ASN SER GLY HIS THR GLY VAL SEQRES 5 B 446 GLY GLU ILE PRO GLY GLY GLU LYS ILE ARG LYS THR LEU SEQRES 6 B 446 GLU ASP ALA ILE PRO LEU VAL VAL GLY LYS THR LEU GLY SEQRES 7 B 446 GLU TYR LYS ASN VAL LEU THR LEU VAL ARG ASN THR PHE SEQRES 8 B 446 ALA ASP ARG ASP ALA GLY GLY ARG GLY LEU GLN THR PHE SEQRES 9 B 446 ASP LEU ARG THR THR ILE HIS VAL VAL THR GLY ILE GLU SEQRES 10 B 446 ALA ALA MET LEU ASP LEU LEU GLY GLN HIS LEU GLY VAL SEQRES 11 B 446 ASN VAL ALA SER LEU LEU GLY ASP GLY GLN GLN ARG SER SEQRES 12 B 446 GLU VAL GLU MET LEU GLY TYR LEU PHE PHE VAL GLY ASN SEQRES 13 B 446 ARG LYS ALA THR PRO LEU PRO TYR GLN SER GLN PRO ASP SEQRES 14 B 446 ASP SER CYS ASP TRP TYR ARG LEU ARG HIS GLU GLU ALA SEQRES 15 B 446 MET THR PRO ASP ALA VAL VAL ARG LEU ALA GLU ALA ALA SEQRES 16 B 446 TYR GLU LYS TYR GLY PHE ASN ASP PHE LYS LEU LYS GLY SEQRES 17 B 446 GLY VAL LEU ALA GLY GLU GLU GLU ALA GLU SER ILE VAL SEQRES 18 B 446 ALA LEU ALA GLN ARG PHE PRO GLN ALA ARG ILE THR LEU SEQRES 19 B 446 ASP PRO ASN GLY ALA TRP SER LEU ASN GLU ALA ILE LYS SEQRES 20 B 446 ILE GLY LYS TYR LEU LYS GLY SER LEU ALA TYR ALA GLU SEQRES 21 B 446 ASP PRO CYS GLY ALA GLU GLN GLY PHE SER GLY ARG GLU SEQRES 22 B 446 VAL MET ALA GLU PHE ARG ARG ALA THR GLY LEU PRO THR SEQRES 23 B 446 ALA THR ASN MET ILE ALA THR ASP TRP ARG GLN MET GLY SEQRES 24 B 446 HIS THR LEU SER LEU GLN SER VAL ASP ILE PRO LEU ALA SEQRES 25 B 446 ASP PRO HIS PHE TRP THR MET GLN GLY SER VAL ARG VAL SEQRES 26 B 446 ALA GLN MET CYS HIS GLU PHE GLY LEU THR TRP GLY SER SEQRES 27 B 446 HIS SER LEU ASN HIS PHE ASP ILE SER LEU ALA MET PHE SEQRES 28 B 446 THR HIS VAL ALA ALA ALA ALA PRO GLY LYS ILE THR ALA SEQRES 29 B 446 ILE ASP THR HIS TRP ILE TRP GLN GLU GLY ASN GLN ARG SEQRES 30 B 446 LEU THR LYS GLU PRO PHE GLU ILE LYS GLY GLY LEU VAL SEQRES 31 B 446 GLN VAL PRO GLU LYS PRO GLY LEU GLY VAL GLU ILE ASP SEQRES 32 B 446 MET ASP GLN VAL MET LYS ALA HIS GLU LEU TYR GLN LYS SEQRES 33 B 446 HIS GLY LEU GLY ALA ARG ASP ASP ALA MET GLY MET GLN SEQRES 34 B 446 TYR LEU ILE PRO GLY TRP THR PHE ASP ASN LYS ARG PRO SEQRES 35 B 446 CYS MET VAL ARG HET MG A 498 1 HET GKR A 499 14 HET IPA A 601 4 HET MG B 501 1 HET GKR B 502 14 HET IPA B 602 4 HETNAM MG MAGNESIUM ION HETNAM GKR D-GLUCARATE HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 3 MG 2(MG 2+) FORMUL 4 GKR 2(C6 H8 O8 2-) FORMUL 5 IPA 2(C3 H8 O) FORMUL 9 HOH *96(H2 O) HELIX 1 1 GLY A 58 ALA A 68 1 11 HELIX 2 2 ALA A 68 VAL A 73 1 6 HELIX 3 3 GLU A 79 PHE A 91 1 13 HELIX 4 4 THR A 108 GLY A 129 1 22 HELIX 5 5 VAL A 132 LEU A 136 5 5 HELIX 6 6 ASN A 156 THR A 160 5 5 HELIX 7 7 CYS A 172 ARG A 178 1 7 HELIX 8 8 THR A 184 GLY A 200 1 17 HELIX 9 9 ALA A 212 PHE A 227 1 16 HELIX 10 10 SER A 241 LYS A 253 1 13 HELIX 11 11 SER A 270 GLY A 283 1 14 HELIX 12 12 ASP A 294 GLN A 305 1 12 HELIX 13 13 ASP A 313 TRP A 317 5 5 HELIX 14 14 THR A 318 GLY A 333 1 16 HELIX 15 15 PHE A 344 ALA A 356 1 13 HELIX 16 16 HIS A 368 GLU A 373 1 6 HELIX 17 17 ASP A 403 HIS A 417 1 15 HELIX 18 18 ASP A 424 GLN A 429 1 6 HELIX 19 19 GLY B 58 ASP B 67 1 10 HELIX 20 20 ALA B 68 VAL B 73 1 6 HELIX 21 21 GLU B 79 PHE B 91 1 13 HELIX 22 22 THR B 108 HIS B 127 1 20 HELIX 23 23 VAL B 132 LEU B 136 5 5 HELIX 24 24 ASN B 156 THR B 160 5 5 HELIX 25 25 CYS B 172 ARG B 178 1 7 HELIX 26 26 THR B 184 GLY B 200 1 17 HELIX 27 27 ALA B 212 PHE B 227 1 16 HELIX 28 28 SER B 241 LEU B 252 1 12 HELIX 29 29 SER B 270 GLY B 283 1 14 HELIX 30 30 ASP B 294 GLN B 305 1 12 HELIX 31 31 ASP B 313 TRP B 317 5 5 HELIX 32 32 THR B 318 GLY B 333 1 16 HELIX 33 33 PHE B 344 ALA B 356 1 13 HELIX 34 34 HIS B 368 GLN B 372 5 5 HELIX 35 35 ASP B 403 HIS B 417 1 15 HELIX 36 36 ASP B 424 GLN B 429 1 6 SHEET 1 A 3 VAL A 10 HIS A 21 0 SHEET 2 A 3 PHE A 35 ASP A 45 -1 O PHE A 36 N GLY A 20 SHEET 3 A 3 THR A 50 PRO A 56 -1 N GLY A 51 O ILE A 43 SHEET 1 B 3 GLY A 30 ALA A 31 0 SHEET 2 B 3 LEU A 25 ASN A 27 -1 N ASN A 27 O GLY A 30 SHEET 3 B 3 PHE A 153 VAL A 154 -1 O PHE A 153 N MET A 26 SHEET 1 C 2 GLU A 144 GLU A 146 0 SHEET 2 C 2 LEU A 389 GLN A 391 -1 O VAL A 390 N VAL A 145 SHEET 1 D 6 GLY A 149 LEU A 151 0 SHEET 2 D 6 ASP A 203 LYS A 207 1 O ASP A 203 N GLY A 149 SHEET 3 D 6 ARG A 231 ASP A 235 1 O ARG A 231 N PHE A 204 SHEET 4 D 6 LEU A 256 GLU A 260 1 N ALA A 257 O ILE A 232 SHEET 5 D 6 THR A 286 THR A 288 1 N ALA A 287 O ALA A 259 SHEET 6 D 6 ILE A 309 PRO A 310 1 N ILE A 309 O THR A 286 SHEET 1 E 3 VAL B 10 HIS B 21 0 SHEET 2 E 3 PHE B 35 ASP B 45 -1 O PHE B 36 N GLY B 20 SHEET 3 E 3 THR B 50 PRO B 56 -1 N GLY B 51 O ILE B 43 SHEET 1 F 2 GLY B 30 ALA B 31 0 SHEET 2 F 2 LEU B 25 ASN B 27 -1 N ASN B 27 O GLY B 30 SHEET 1 G 3 GLY B 149 LEU B 151 0 SHEET 2 G 3 PHE B 204 LYS B 207 1 O LYS B 205 N LEU B 151 SHEET 3 G 3 LEU B 234 ASP B 235 1 N ASP B 235 O LEU B 206 SHEET 1 H 3 ALA B 259 GLU B 260 0 SHEET 2 H 3 THR B 286 THR B 288 1 N ALA B 287 O ALA B 259 SHEET 3 H 3 ILE B 309 PRO B 310 1 N ILE B 309 O THR B 286 LINK OD1 ASP A 235 MG MG A 498 1555 1555 2.11 LINK OE2 GLU A 260 MG MG A 498 1555 1555 1.94 LINK OD1 ASN A 289 MG MG A 498 1555 1555 2.15 LINK MG MG A 498 O6A GKR A 499 1555 1555 2.30 LINK MG MG A 498 O6B GKR A 499 1555 1555 2.19 LINK MG MG A 498 O HOH A 624 1555 1555 2.11 LINK OD1 ASP B 235 MG MG B 501 1555 1555 1.96 LINK OE2 GLU B 260 MG MG B 501 1555 1555 1.90 LINK OD1 ASN B 289 MG MG B 501 1555 1555 2.39 LINK MG MG B 501 O6A GKR B 502 1555 1555 2.41 LINK MG MG B 501 O6B GKR B 502 1555 1555 2.18 LINK MG MG B 501 O HOH B 619 1555 1555 2.06 SITE 1 AC1 5 ASP A 235 GLU A 260 ASN A 289 GKR A 499 SITE 2 AC1 5 HOH A 624 SITE 1 AC2 6 LYS B 205 ASP B 235 GLU B 260 ASN B 289 SITE 2 AC2 6 GKR B 502 HOH B 619 SITE 1 AC3 17 ASN A 27 HIS A 32 THR A 103 TYR A 150 SITE 2 AC3 17 PHE A 152 LYS A 205 LYS A 207 ASP A 235 SITE 3 AC3 17 ASN A 237 GLU A 260 ASN A 289 SER A 340 SITE 4 AC3 17 LEU A 341 HIS A 368 ARG A 422 MG A 498 SITE 5 AC3 17 HOH A 624 SITE 1 AC4 18 ASN B 27 HIS B 32 THR B 103 TYR B 150 SITE 2 AC4 18 PHE B 152 LYS B 205 LYS B 207 ASP B 235 SITE 3 AC4 18 ASN B 237 GLU B 260 ASN B 289 HIS B 339 SITE 4 AC4 18 SER B 340 LEU B 341 HIS B 368 ARG B 422 SITE 5 AC4 18 MG B 501 HOH B 619 SITE 1 AC5 4 GLY A 299 LEU A 302 SER A 303 PHE A 332 SITE 1 AC6 3 GLY B 299 LEU B 302 SER B 303 CRYST1 73.924 203.159 136.185 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013527 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007343 0.00000