HEADER STRUCTURAL GENOMICS 14-JUN-01 1JDQ TITLE SOLUTION STRUCTURE OF TM006 PROTEIN FROM THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN TM0983; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TM006 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TM006, THERMOTOGA MARITIMA, STRUCTURAL GENOMICS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.Y.DENISOV,G.FINAK,A.YEE,G.KOZLOV,K.GEHRING,C.H.ARROWSMITH REVDAT 5 22-MAY-24 1JDQ 1 REMARK REVDAT 4 23-FEB-22 1JDQ 1 REMARK SEQADV REVDAT 3 24-FEB-09 1JDQ 1 VERSN REVDAT 2 01-APR-03 1JDQ 1 JRNL REVDAT 1 27-FEB-02 1JDQ 0 JRNL AUTH A.YEE,X.CHANG,A.PINEDA-LUCENA,B.WU,A.SEMESI,B.LE,T.RAMELOT, JRNL AUTH 2 G.M.LEE,S.BHATTACHARYYA,P.GUTIERREZ,A.DENISOV,C.H.LEE, JRNL AUTH 3 J.R.CORT,G.KOZLOV,J.LIAO,G.FINAK,L.CHEN,D.WISHART,W.LEE, JRNL AUTH 4 L.P.MCINTOSH,K.GEHRING,M.A.KENNEDY,A.M.EDWARDS, JRNL AUTH 5 C.H.ARROWSMITH JRNL TITL AN NMR APPROACH TO STRUCTURAL PROTEOMICS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 1825 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11854485 JRNL DOI 10.1073/PNAS.042684599 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, CNS 0.9 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 AFTER DETERMINATION OF PROTEIN FOLD BY USING MANUAL NOE ASSIGMENTS, REMARK 3 VALUES OF COUPLING CONSTANTS REMARK 3 AND 13C CHEMICAL SHIFTS, AUTOMATIC PEAK NOE ASSIGMENTS WERE MADE REMARK 3 BY USING ARIA AND THE STRUCTURE REMARK 3 REFINED BY USING STANDARD PROTOCOL IN CNS. REMARK 4 REMARK 4 1JDQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013659. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 310; 310 REMARK 210 PH : 6.8; 6.8; 6.8 REMARK 210 IONIC STRENGTH : 150 MM NACL; 150 MM NACL; 150 MM REMARK 210 NACL REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM TM006 PROTEIN U-15N,13C; REMARK 210 50MM PHOSPHATE BUFFER; 2 MM REMARK 210 TM006 PROTEIN U-15N; 50MM REMARK 210 PHOSPHATE BUFFER; 5 MM TM006 REMARK 210 UNLABELLED PROTEIN; 50MM REMARK 210 PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCACB; CBCA(CO)HN; 15N-HMQC REMARK 210 -TOCSY; 15N-HMQC-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.1, XEASY 1.3.13, ARIA REMARK 210 14.5.98 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 85 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 STRUCTURE WAS DETERMINED USING 2D AND 3D EXPERIMENTS FOR REMARK 210 UNLABELLED, REMARK 210 15N-LABELLED AND DOUBLE-LABELLED PROTEIN. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 4 -40.53 -133.62 REMARK 500 1 HIS A 9 -81.93 -89.92 REMARK 500 1 SER A 11 -79.09 -80.61 REMARK 500 1 SER A 18 -150.30 -73.83 REMARK 500 1 THR A 26 -65.21 -99.60 REMARK 500 1 ARG A 32 -100.00 -69.97 REMARK 500 1 VAL A 35 -90.91 -135.14 REMARK 500 1 PRO A 52 -86.16 -38.23 REMARK 500 1 LYS A 75 -77.51 -90.45 REMARK 500 1 LEU A 76 -98.52 -98.79 REMARK 500 1 GLU A 79 55.89 -101.18 REMARK 500 1 LEU A 81 -36.12 -133.31 REMARK 500 1 VAL A 86 -64.40 -127.28 REMARK 500 1 PRO A 88 -77.39 -60.81 REMARK 500 2 SER A 2 -63.13 -128.57 REMARK 500 2 SER A 3 -73.41 -110.53 REMARK 500 2 SER A 11 -79.54 -76.36 REMARK 500 2 SER A 18 -151.59 -79.09 REMARK 500 2 TYR A 23 47.32 -93.46 REMARK 500 2 ARG A 32 -88.21 -64.86 REMARK 500 2 VAL A 35 -91.47 -134.95 REMARK 500 2 PRO A 37 21.61 -72.83 REMARK 500 2 ASN A 49 61.68 -118.19 REMARK 500 2 PRO A 52 -73.57 -46.20 REMARK 500 2 PRO A 63 93.73 -67.88 REMARK 500 2 LYS A 75 -78.18 -86.85 REMARK 500 2 LEU A 76 -98.59 -98.73 REMARK 500 2 GLU A 79 58.93 -97.87 REMARK 500 2 LEU A 81 -35.79 -133.53 REMARK 500 2 VAL A 86 -73.76 -124.65 REMARK 500 2 PRO A 88 -82.00 -60.82 REMARK 500 3 SER A 10 95.56 -69.16 REMARK 500 3 SER A 11 -81.97 -86.01 REMARK 500 3 SER A 18 -89.07 -66.26 REMARK 500 3 HIS A 19 -92.32 -139.97 REMARK 500 3 MET A 20 45.07 -81.75 REMARK 500 3 LYS A 22 30.50 -88.07 REMARK 500 3 VAL A 31 64.30 -118.45 REMARK 500 3 ARG A 32 -176.24 -63.27 REMARK 500 3 GLU A 34 -156.22 -108.06 REMARK 500 3 VAL A 35 -88.20 -108.30 REMARK 500 3 PRO A 37 30.40 -79.21 REMARK 500 3 ASN A 49 62.18 -119.12 REMARK 500 3 PRO A 52 -70.78 -43.70 REMARK 500 3 LYS A 75 -78.36 -90.20 REMARK 500 3 LEU A 76 -97.37 -99.57 REMARK 500 3 LEU A 81 -37.85 -133.53 REMARK 500 3 VAL A 86 -66.97 -120.80 REMARK 500 3 PRO A 88 -82.13 -56.44 REMARK 500 4 HIS A 9 -72.80 -70.92 REMARK 500 REMARK 500 THIS ENTRY HAS 315 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1JDQ A 20 98 UNP Q9X078 Y983_THEMA 1 79 SEQADV 1JDQ GLY A 1 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ SER A 2 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ SER A 3 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ HIS A 4 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ HIS A 5 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ HIS A 6 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ HIS A 7 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ HIS A 8 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ HIS A 9 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ SER A 10 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ SER A 11 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ GLY A 12 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ LEU A 13 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ VAL A 14 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ PRO A 15 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ ARG A 16 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ GLY A 17 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ SER A 18 UNP Q9X078 EXPRESSION TAG SEQADV 1JDQ HIS A 19 UNP Q9X078 EXPRESSION TAG SEQRES 1 A 98 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 98 VAL PRO ARG GLY SER HIS MET ALA LYS TYR GLN VAL THR SEQRES 3 A 98 LYS THR LEU ASP VAL ARG GLY GLU VAL CYS PRO VAL PRO SEQRES 4 A 98 ASP VAL GLU THR LYS ARG ALA LEU GLN ASN MET LYS PRO SEQRES 5 A 98 GLY GLU ILE LEU GLU VAL TRP ILE ASP TYR PRO MET SER SEQRES 6 A 98 LYS GLU ARG ILE PRO GLU THR VAL LYS LYS LEU GLY HIS SEQRES 7 A 98 GLU VAL LEU GLU ILE GLU GLU VAL GLY PRO SER GLU TRP SEQRES 8 A 98 LYS ILE TYR ILE LYS VAL LYS HELIX 1 1 PRO A 37 ASN A 49 1 13 HELIX 2 2 MET A 64 LEU A 76 1 13 SHEET 1 A 4 LYS A 27 ASP A 30 0 SHEET 2 A 4 ILE A 55 ILE A 60 1 O ILE A 55 N LYS A 27 SHEET 3 A 4 TRP A 91 LYS A 96 -1 N TRP A 91 O ILE A 60 SHEET 4 A 4 VAL A 80 GLU A 85 -1 N LEU A 81 O TYR A 94 CISPEP 1 CYS A 36 PRO A 37 5 1.24 CISPEP 2 TYR A 62 PRO A 63 5 -0.24 CISPEP 3 TYR A 62 PRO A 63 7 -1.52 CISPEP 4 VAL A 14 PRO A 15 8 1.61 CISPEP 5 CYS A 36 PRO A 37 8 1.55 CISPEP 6 VAL A 14 PRO A 15 12 0.02 CISPEP 7 TYR A 62 PRO A 63 12 -1.42 CISPEP 8 CYS A 36 PRO A 37 13 1.11 CISPEP 9 TYR A 62 PRO A 63 13 0.57 CISPEP 10 VAL A 14 PRO A 15 14 -0.09 CISPEP 11 CYS A 36 PRO A 37 17 1.46 CISPEP 12 CYS A 36 PRO A 37 18 1.15 CISPEP 13 TYR A 62 PRO A 63 20 -0.31 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1