HEADER TRANSFERASE 15-JUN-01 1JDT TITLE CRYSTAL STRUCTURE OF 5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE TITLE 2 COMPLEXED WITH MTA AND SULFATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-METHYLTHIOADENOSINE PHOSPHORYLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MTA PHOSPHORYLASE; MTAP; COMPND 5 EC: 2.4.2.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.C.APPLEBY,I.I.MATHEWS,M.PORCELLI,G.CACCIAPUOTI,S.E.EALICK REVDAT 5 30-OCT-24 1JDT 1 REMARK REVDAT 4 03-APR-24 1JDT 1 REMARK REVDAT 3 13-JUL-11 1JDT 1 VERSN REVDAT 2 24-FEB-09 1JDT 1 VERSN REVDAT 1 26-OCT-01 1JDT 0 JRNL AUTH T.C.APPLEBY,I.I.MATHEWS,M.PORCELLI,G.CACCIAPUOTI,S.E.EALICK JRNL TITL THREE-DIMENSIONAL STRUCTURE OF A HYPERTHERMOPHILIC JRNL TITL 2 5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE FROM JRNL TITL 3 SULFOLOBUS SOLFATARICUS. JRNL REF J.BIOL.CHEM. V. 276 39232 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11489901 JRNL DOI 10.1074/JBC.M105694200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.CACCIAPUOTI,M.PORCELLI,C.BERTOLDO,M.DE ROSA,V.ZAPPIA REMARK 1 TITL PURIFICATION AND CHARACTERIZATION OF EXTREMELY THERMOPHILIC REMARK 1 TITL 2 AND THERMOSTABLE 5'-METHYLTHIOADENOSINE PHOSPHORYLASE FROM REMARK 1 TITL 3 THE ARCHAEON SULFOLOBUS SOLFATARICUS. PURINE NUCLEOSIDE REMARK 1 TITL 4 PHOSPHORYLASE ACTIVITY AND EVIDENCE FOR INTERSUBUNIT REMARK 1 TITL 5 DISULFIDE BONDS REMARK 1 REF J.BIOL.CHEM. V. 269 24762 1994 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.E.EALICK,S.A.RULE,D.C.CARTER,T.J.GREENHOUGH,Y.S.BABU REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF HUMAN ERYTHROCYTIC PURINE REMARK 1 TITL 2 NUCLEOSIDE PHOSPHORYLASE AT 3.2 RESOLUTION REMARK 1 REF J.BIOL.CHEM. V. 265 1812 1990 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.C.APPLEBY,M.D.ERION,S.E.EALICK REMARK 1 TITL THE STRUCTURE OF HUMAN 5'-DEOXY-5'-METHYLTHIOADENOSINE REMARK 1 TITL 2 PHOSPHORYLASE AT 1.7 RESOLUTION PROVIDES INSIGHTS INTO REMARK 1 TITL 3 SUBSTRATE BINDING AND CATALYSIS REMARK 1 REF STRUCTURE V. 7 629 1999 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(99)80084-7 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 50045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2510 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5286 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.257 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9023 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NATIVE SSMTAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DIOXANE, MPD, MGCL2, NACL, TRIS.HCL AT REMARK 280 PH 7.4, VAPOR DIFFUSION, HANGING DROP, 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.15000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.15000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.55000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.80000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.15000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.55000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.80000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 88.15000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HEXAMER GENERATED FROM THE TRIMER IN THE ASYMMETRIC UNIT BY REMARK 300 THE CRYSTALLOGRAPHIC TWO FOLD REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -201.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 101.60000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.55000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 210 REMARK 465 GLY A 211 REMARK 465 ILE A 212 REMARK 465 TRP A 213 REMARK 465 MET B 1 REMARK 465 GLY B 210 REMARK 465 GLY B 211 REMARK 465 ILE B 212 REMARK 465 TRP B 213 REMARK 465 MET C 1 REMARK 465 GLY C 210 REMARK 465 GLY C 211 REMARK 465 ILE C 212 REMARK 465 TRP C 213 REMARK 465 ILE C 214 REMARK 465 THR C 215 REMARK 465 LYS C 216 REMARK 465 GLU C 217 REMARK 465 GLU C 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN B 112 OE1 GLN B 112 3655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 43 18.94 54.21 REMARK 500 ASN A 82 -4.13 -147.59 REMARK 500 ASP A 164 -162.85 -78.56 REMARK 500 LEU B 7 46.49 -98.15 REMARK 500 ARG B 43 19.01 59.19 REMARK 500 ASN B 53 -134.37 59.34 REMARK 500 ASN B 82 -7.53 -144.31 REMARK 500 TYR B 161 30.00 -90.31 REMARK 500 ARG C 43 15.54 58.61 REMARK 500 ASN C 82 -3.84 -148.27 REMARK 500 GLU C 163 78.76 -33.96 REMARK 500 ASP C 164 -156.48 -72.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 3250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA A 1260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA B 2260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA C 3260 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JDS RELATED DB: PDB REMARK 900 NATIVE COMPLEX REMARK 900 RELATED ID: 1JDT RELATED DB: PDB REMARK 900 COMPLEXED WITH PHOSPHATE REMARK 900 RELATED ID: 1JDU RELATED DB: PDB REMARK 900 COMPLEXED WITH GUANOSINE AND SULFATE REMARK 900 RELATED ID: 1JDV RELATED DB: PDB REMARK 900 COMPLEXED WITH PHOSPHATE (SPACE GROUP: C2221) REMARK 900 RELATED ID: 1JDZ RELATED DB: PDB REMARK 900 COMPLEXED WITH FORMYCIN B AND SULFATE REMARK 900 RELATED ID: 1JE0 RELATED DB: PDB REMARK 900 COMPLEXED WITH ADENOSINE AND SULFATE REMARK 900 RELATED ID: 1JE1 RELATED DB: PDB REMARK 900 COMPLEXED WITH MTA AND SULFATE DBREF 1JDT A 1 236 UNP P50389 MTAP_SULSO 1 236 DBREF 1JDT B 1 236 UNP P50389 MTAP_SULSO 1 236 DBREF 1JDT C 1 236 UNP P50389 MTAP_SULSO 1 236 SEQRES 1 A 236 MET ASN PRO VAL HIS ILE LEU ALA LYS LYS GLY GLU VAL SEQRES 2 A 236 ALA GLU ARG VAL LEU VAL VAL GLY ASP PRO GLY ARG ALA SEQRES 3 A 236 ARG LEU LEU SER THR LEU LEU GLN ASN PRO LYS LEU THR SEQRES 4 A 236 ASN GLU ASN ARG GLY PHE LEU VAL TYR THR GLY LYS TYR SEQRES 5 A 236 ASN GLY GLU THR VAL SER ILE ALA THR HIS GLY ILE GLY SEQRES 6 A 236 GLY PRO SER ILE ALA ILE VAL LEU GLU GLU LEU ALA MET SEQRES 7 A 236 LEU GLY ALA ASN VAL PHE ILE ARG TYR GLY THR THR GLY SEQRES 8 A 236 ALA LEU VAL PRO TYR ILE ASN LEU GLY GLU TYR ILE ILE SEQRES 9 A 236 VAL THR GLY ALA SER TYR ASN GLN GLY GLY LEU PHE TYR SEQRES 10 A 236 GLN TYR LEU ARG ASP ASN ALA CYS VAL ALA SER THR PRO SEQRES 11 A 236 ASP PHE GLU LEU THR ASN LYS LEU VAL THR SER PHE SER SEQRES 12 A 236 LYS ARG ASN LEU LYS TYR TYR VAL GLY ASN VAL PHE SER SEQRES 13 A 236 SER ASP ALA PHE TYR ALA GLU ASP GLU GLU PHE VAL LYS SEQRES 14 A 236 LYS TRP SER SER ARG GLY ASN ILE ALA VAL GLU MET GLU SEQRES 15 A 236 CYS ALA THR LEU PHE THR LEU SER LYS VAL LYS GLY TRP SEQRES 16 A 236 LYS SER ALA THR VAL LEU VAL VAL SER ASP ASN LEU ALA SEQRES 17 A 236 LYS GLY GLY ILE TRP ILE THR LYS GLU GLU LEU GLU LYS SEQRES 18 A 236 SER VAL MET ASP GLY ALA LYS ALA VAL LEU ASP THR LEU SEQRES 19 A 236 THR SER SEQRES 1 B 236 MET ASN PRO VAL HIS ILE LEU ALA LYS LYS GLY GLU VAL SEQRES 2 B 236 ALA GLU ARG VAL LEU VAL VAL GLY ASP PRO GLY ARG ALA SEQRES 3 B 236 ARG LEU LEU SER THR LEU LEU GLN ASN PRO LYS LEU THR SEQRES 4 B 236 ASN GLU ASN ARG GLY PHE LEU VAL TYR THR GLY LYS TYR SEQRES 5 B 236 ASN GLY GLU THR VAL SER ILE ALA THR HIS GLY ILE GLY SEQRES 6 B 236 GLY PRO SER ILE ALA ILE VAL LEU GLU GLU LEU ALA MET SEQRES 7 B 236 LEU GLY ALA ASN VAL PHE ILE ARG TYR GLY THR THR GLY SEQRES 8 B 236 ALA LEU VAL PRO TYR ILE ASN LEU GLY GLU TYR ILE ILE SEQRES 9 B 236 VAL THR GLY ALA SER TYR ASN GLN GLY GLY LEU PHE TYR SEQRES 10 B 236 GLN TYR LEU ARG ASP ASN ALA CYS VAL ALA SER THR PRO SEQRES 11 B 236 ASP PHE GLU LEU THR ASN LYS LEU VAL THR SER PHE SER SEQRES 12 B 236 LYS ARG ASN LEU LYS TYR TYR VAL GLY ASN VAL PHE SER SEQRES 13 B 236 SER ASP ALA PHE TYR ALA GLU ASP GLU GLU PHE VAL LYS SEQRES 14 B 236 LYS TRP SER SER ARG GLY ASN ILE ALA VAL GLU MET GLU SEQRES 15 B 236 CYS ALA THR LEU PHE THR LEU SER LYS VAL LYS GLY TRP SEQRES 16 B 236 LYS SER ALA THR VAL LEU VAL VAL SER ASP ASN LEU ALA SEQRES 17 B 236 LYS GLY GLY ILE TRP ILE THR LYS GLU GLU LEU GLU LYS SEQRES 18 B 236 SER VAL MET ASP GLY ALA LYS ALA VAL LEU ASP THR LEU SEQRES 19 B 236 THR SER SEQRES 1 C 236 MET ASN PRO VAL HIS ILE LEU ALA LYS LYS GLY GLU VAL SEQRES 2 C 236 ALA GLU ARG VAL LEU VAL VAL GLY ASP PRO GLY ARG ALA SEQRES 3 C 236 ARG LEU LEU SER THR LEU LEU GLN ASN PRO LYS LEU THR SEQRES 4 C 236 ASN GLU ASN ARG GLY PHE LEU VAL TYR THR GLY LYS TYR SEQRES 5 C 236 ASN GLY GLU THR VAL SER ILE ALA THR HIS GLY ILE GLY SEQRES 6 C 236 GLY PRO SER ILE ALA ILE VAL LEU GLU GLU LEU ALA MET SEQRES 7 C 236 LEU GLY ALA ASN VAL PHE ILE ARG TYR GLY THR THR GLY SEQRES 8 C 236 ALA LEU VAL PRO TYR ILE ASN LEU GLY GLU TYR ILE ILE SEQRES 9 C 236 VAL THR GLY ALA SER TYR ASN GLN GLY GLY LEU PHE TYR SEQRES 10 C 236 GLN TYR LEU ARG ASP ASN ALA CYS VAL ALA SER THR PRO SEQRES 11 C 236 ASP PHE GLU LEU THR ASN LYS LEU VAL THR SER PHE SER SEQRES 12 C 236 LYS ARG ASN LEU LYS TYR TYR VAL GLY ASN VAL PHE SER SEQRES 13 C 236 SER ASP ALA PHE TYR ALA GLU ASP GLU GLU PHE VAL LYS SEQRES 14 C 236 LYS TRP SER SER ARG GLY ASN ILE ALA VAL GLU MET GLU SEQRES 15 C 236 CYS ALA THR LEU PHE THR LEU SER LYS VAL LYS GLY TRP SEQRES 16 C 236 LYS SER ALA THR VAL LEU VAL VAL SER ASP ASN LEU ALA SEQRES 17 C 236 LYS GLY GLY ILE TRP ILE THR LYS GLU GLU LEU GLU LYS SEQRES 18 C 236 SER VAL MET ASP GLY ALA LYS ALA VAL LEU ASP THR LEU SEQRES 19 C 236 THR SER HET SO4 A1250 5 HET MTA A1260 20 HET SO4 B2250 5 HET MTA B2260 20 HET SO4 C3250 5 HET MTA C3260 20 HETNAM SO4 SULFATE ION HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 MTA 3(C11 H15 N5 O3 S) FORMUL 10 HOH *167(H2 O) HELIX 1 1 ASP A 22 THR A 31 1 10 HELIX 2 2 GLU A 41 PHE A 45 5 5 HELIX 3 3 GLY A 65 LEU A 79 1 15 HELIX 4 4 GLY A 113 ARG A 121 1 9 HELIX 5 5 ASP A 131 ARG A 145 1 15 HELIX 6 6 ASP A 164 SER A 173 1 10 HELIX 7 7 GLU A 182 GLY A 194 1 13 HELIX 8 8 THR A 215 SER A 236 1 22 HELIX 9 9 ASP B 22 SER B 30 1 9 HELIX 10 10 THR B 31 LEU B 33 5 3 HELIX 11 11 GLU B 41 PHE B 45 5 5 HELIX 12 12 GLY B 65 LEU B 79 1 15 HELIX 13 13 GLY B 113 ARG B 121 1 9 HELIX 14 14 ASP B 131 ARG B 145 1 15 HELIX 15 15 ASP B 164 SER B 173 1 10 HELIX 16 16 GLU B 182 GLY B 194 1 13 HELIX 17 17 THR B 215 THR B 235 1 21 HELIX 18 18 ASP C 22 THR C 31 1 10 HELIX 19 19 GLU C 41 PHE C 45 5 5 HELIX 20 20 GLY C 65 LEU C 79 1 15 HELIX 21 21 GLY C 113 ARG C 121 1 9 HELIX 22 22 ASP C 131 ARG C 145 1 15 HELIX 23 23 GLU C 166 SER C 173 1 8 HELIX 24 24 GLU C 182 GLY C 194 1 13 HELIX 25 25 LEU C 219 THR C 235 1 17 SHEET 1 A10 GLN A 34 ASN A 40 0 SHEET 2 A10 VAL A 47 TYR A 52 -1 O VAL A 47 N THR A 39 SHEET 3 A10 GLU A 55 THR A 61 -1 O GLU A 55 N TYR A 52 SHEET 4 A10 ARG A 16 VAL A 20 1 O ARG A 16 N SER A 58 SHEET 5 A10 VAL A 83 ALA A 92 1 O VAL A 83 N VAL A 17 SHEET 6 A10 ASN A 176 GLU A 180 -1 N VAL A 179 O GLY A 91 SHEET 7 A10 TYR A 149 SER A 156 1 O ASN A 153 N ILE A 177 SHEET 8 A10 TYR A 102 SER A 109 1 O TYR A 102 N TYR A 150 SHEET 9 A10 LYS A 196 ASN A 206 -1 O THR A 199 N VAL A 105 SHEET 10 A10 VAL A 83 ALA A 92 1 N PHE A 84 O LYS A 196 SHEET 1 B10 GLN B 34 ASN B 40 0 SHEET 2 B10 VAL B 47 TYR B 52 -1 O VAL B 47 N THR B 39 SHEET 3 B10 GLU B 55 THR B 61 -1 O GLU B 55 N TYR B 52 SHEET 4 B10 ARG B 16 VAL B 20 1 O ARG B 16 N SER B 58 SHEET 5 B10 VAL B 83 ALA B 92 1 O VAL B 83 N VAL B 17 SHEET 6 B10 ASN B 176 GLU B 180 -1 N VAL B 179 O GLY B 91 SHEET 7 B10 TYR B 149 SER B 156 1 O ASN B 153 N ILE B 177 SHEET 8 B10 TYR B 102 SER B 109 1 O TYR B 102 N TYR B 150 SHEET 9 B10 LYS B 196 ASN B 206 -1 O THR B 199 N VAL B 105 SHEET 10 B10 VAL B 83 ALA B 92 1 N PHE B 84 O LYS B 196 SHEET 1 C10 GLN C 34 ASN C 40 0 SHEET 2 C10 VAL C 47 TYR C 52 -1 O VAL C 47 N THR C 39 SHEET 3 C10 GLU C 55 THR C 61 -1 O GLU C 55 N TYR C 52 SHEET 4 C10 ARG C 16 VAL C 20 1 O ARG C 16 N SER C 58 SHEET 5 C10 VAL C 83 ALA C 92 1 O VAL C 83 N VAL C 17 SHEET 6 C10 ASN C 176 GLU C 180 -1 N VAL C 179 O GLY C 91 SHEET 7 C10 TYR C 149 SER C 156 1 O ASN C 153 N ILE C 177 SHEET 8 C10 TYR C 102 SER C 109 1 O TYR C 102 N TYR C 150 SHEET 9 C10 LYS C 196 ASN C 206 -1 O THR C 199 N VAL C 105 SHEET 10 C10 VAL C 83 ALA C 92 1 N PHE C 84 O LYS C 196 SSBOND 1 CYS A 125 CYS C 125 1555 1555 2.05 SSBOND 2 CYS B 125 CYS B 125 1555 3655 2.51 SITE 1 AC1 8 GLY A 21 ARG A 25 ARG A 43 ARG A 86 SITE 2 AC1 8 GLY A 88 THR A 89 GLU A 182 MTA A1260 SITE 1 AC2 7 GLY B 21 ARG B 25 ARG B 86 GLY B 88 SITE 2 AC2 7 THR B 89 MTA B2260 ARG C 43 SITE 1 AC3 7 ARG B 43 GLY C 21 ARG C 25 ARG C 86 SITE 2 AC3 7 GLY C 88 THR C 89 MTA C3260 SITE 1 AC4 13 HIS A 5 ARG A 43 THR A 89 THR A 90 SITE 2 AC4 13 GLY A 91 PHE A 160 GLU A 163 VAL A 179 SITE 3 AC4 13 GLU A 180 MET A 181 GLU A 182 ASP A 205 SITE 4 AC4 13 SO4 A1250 SITE 1 AC5 15 ARG B 86 THR B 89 THR B 90 GLY B 91 SITE 2 AC5 15 PHE B 160 GLU B 163 VAL B 179 GLU B 180 SITE 3 AC5 15 MET B 181 GLU B 182 SER B 204 ASP B 205 SITE 4 AC5 15 SO4 B2250 HIS C 5 ARG C 43 SITE 1 AC6 17 HIS B 5 ARG B 43 ILE C 64 ARG C 86 SITE 2 AC6 17 THR C 89 THR C 90 GLY C 91 PHE C 160 SITE 3 AC6 17 GLU C 163 VAL C 179 GLU C 180 MET C 181 SITE 4 AC6 17 GLU C 182 SER C 204 ASP C 205 LEU C 207 SITE 5 AC6 17 SO4 C3250 CRYST1 101.600 176.300 87.100 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009843 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011481 0.00000