data_1JEF
#
_entry.id 1JEF
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1JEF pdb_00001jef 10.2210/pdb1jef/pdb
WWPDB D_1000174317 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1997-10-15
2 'Structure model' 1 1 2008-03-24
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2018-04-18
5 'Structure model' 2 0 2020-07-29
6 'Structure model' 2 1 2024-04-03
7 'Structure model' 2 2 2024-10-16
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Non-polymer description'
3 3 'Structure model' 'Version format compliance'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' Other
6 5 'Structure model' 'Atomic model'
7 5 'Structure model' 'Data collection'
8 5 'Structure model' 'Derived calculations'
9 5 'Structure model' 'Structure summary'
10 6 'Structure model' 'Data collection'
11 6 'Structure model' 'Database references'
12 6 'Structure model' 'Refinement description'
13 6 'Structure model' 'Structure summary'
14 7 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' diffrn_detector
2 4 'Structure model' pdbx_database_status
3 5 'Structure model' atom_site
4 5 'Structure model' chem_comp
5 5 'Structure model' entity
6 5 'Structure model' entity_name_com
7 5 'Structure model' pdbx_branch_scheme
8 5 'Structure model' pdbx_chem_comp_identifier
9 5 'Structure model' pdbx_entity_branch
10 5 'Structure model' pdbx_entity_branch_descriptor
11 5 'Structure model' pdbx_entity_branch_link
12 5 'Structure model' pdbx_entity_branch_list
13 5 'Structure model' pdbx_entity_nonpoly
14 5 'Structure model' pdbx_molecule_features
15 5 'Structure model' pdbx_nonpoly_scheme
16 5 'Structure model' pdbx_struct_assembly_gen
17 5 'Structure model' pdbx_struct_special_symmetry
18 5 'Structure model' struct_asym
19 5 'Structure model' struct_conn
20 5 'Structure model' struct_site
21 5 'Structure model' struct_site_gen
22 6 'Structure model' chem_comp
23 6 'Structure model' chem_comp_atom
24 6 'Structure model' chem_comp_bond
25 6 'Structure model' database_2
26 6 'Structure model' pdbx_initial_refinement_model
27 7 'Structure model' pdbx_entry_details
28 7 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_diffrn_detector.detector'
2 4 'Structure model' '_pdbx_database_status.process_site'
3 5 'Structure model' '_atom_site.B_iso_or_equiv'
4 5 'Structure model' '_atom_site.Cartn_x'
5 5 'Structure model' '_atom_site.Cartn_y'
6 5 'Structure model' '_atom_site.Cartn_z'
7 5 'Structure model' '_atom_site.auth_asym_id'
8 5 'Structure model' '_atom_site.auth_atom_id'
9 5 'Structure model' '_atom_site.auth_seq_id'
10 5 'Structure model' '_atom_site.label_asym_id'
11 5 'Structure model' '_atom_site.label_atom_id'
12 5 'Structure model' '_atom_site.type_symbol'
13 5 'Structure model' '_chem_comp.name'
14 5 'Structure model' '_chem_comp.type'
15 5 'Structure model' '_entity.formula_weight'
16 5 'Structure model' '_entity.pdbx_description'
17 5 'Structure model' '_entity.pdbx_number_of_molecules'
18 5 'Structure model' '_entity.type'
19 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
20 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id'
21 5 'Structure model' '_struct_conn.pdbx_dist_value'
22 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
23 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
24 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
25 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
26 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
27 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
28 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
29 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
30 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
31 6 'Structure model' '_chem_comp.pdbx_synonyms'
32 6 'Structure model' '_database_2.pdbx_DOI'
33 6 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1JEF
_pdbx_database_status.recvd_initial_deposition_date 1997-04-23
_pdbx_database_status.deposit_site ?
_pdbx_database_status.process_site BNL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Harata, K.' 1
'Muraki, M.' 2
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'X-ray structure of turkey-egg lysozyme complex with tri-N-acetylchitotriose. Lack of binding ability at subsite A.'
'Acta Crystallogr.,Sect.D' 53 650 657 1997 ABCRE6 DK 0907-4449 0766 ? 15299852 10.1107/S0907444997005362
1
'X-Ray Structure of Turkey Egg Lysozyme Complex with Di-N-Acetylchitobiose. Recognition and Binding of Alpha-Anomeric Form'
'Acta Crystallogr.,Sect.D' 51 718 ? 1995 ABCRE6 DK 0907-4449 0766 ? ? ?
2 'X-Ray Structure of Monoclinic Turkey Egg Lysozyme at 1.3 Angstrom Resolution' 'Acta Crystallogr.,Sect.D' 49 497 ? 1993
ABCRE6 DK 0907-4449 0766 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Harata, K.' 1 ?
primary 'Muraki, M.' 2 ?
1 'Harata, K.' 3 ?
1 'Muraki, M.' 4 ?
2 'Harata, K.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat LYSOZYME 14228.105 1 3.2.1.17 ? ? ?
2 branched man
;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
;
627.594 1 ? ? ? ?
3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ?
4 water nat water 18.015 84 ? ? ? ?
#
_entity_name_com.entity_id 2
_entity_name_com.name triacetyl-beta-chitotriose
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;KVYGRCELAAAMKRLGLDNYRGYSLGNWVCAAKFESNFNTHATNRNTDGSTDYGILQINSRWWCNDGRTPGSKNLCNIPC
SALLSSDITASVNCAKKIASGGNGMNAWVAWRNRCKGTDVHAWIRGCRL
;
_entity_poly.pdbx_seq_one_letter_code_can
;KVYGRCELAAAMKRLGLDNYRGYSLGNWVCAAKFESNFNTHATNRNTDGSTDYGILQINSRWWCNDGRTPGSKNLCNIPC
SALLSSDITASVNCAKKIASGGNGMNAWVAWRNRCKGTDVHAWIRGCRL
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'SULFATE ION' SO4
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 LYS n
1 2 VAL n
1 3 TYR n
1 4 GLY n
1 5 ARG n
1 6 CYS n
1 7 GLU n
1 8 LEU n
1 9 ALA n
1 10 ALA n
1 11 ALA n
1 12 MET n
1 13 LYS n
1 14 ARG n
1 15 LEU n
1 16 GLY n
1 17 LEU n
1 18 ASP n
1 19 ASN n
1 20 TYR n
1 21 ARG n
1 22 GLY n
1 23 TYR n
1 24 SER n
1 25 LEU n
1 26 GLY n
1 27 ASN n
1 28 TRP n
1 29 VAL n
1 30 CYS n
1 31 ALA n
1 32 ALA n
1 33 LYS n
1 34 PHE n
1 35 GLU n
1 36 SER n
1 37 ASN n
1 38 PHE n
1 39 ASN n
1 40 THR n
1 41 HIS n
1 42 ALA n
1 43 THR n
1 44 ASN n
1 45 ARG n
1 46 ASN n
1 47 THR n
1 48 ASP n
1 49 GLY n
1 50 SER n
1 51 THR n
1 52 ASP n
1 53 TYR n
1 54 GLY n
1 55 ILE n
1 56 LEU n
1 57 GLN n
1 58 ILE n
1 59 ASN n
1 60 SER n
1 61 ARG n
1 62 TRP n
1 63 TRP n
1 64 CYS n
1 65 ASN n
1 66 ASP n
1 67 GLY n
1 68 ARG n
1 69 THR n
1 70 PRO n
1 71 GLY n
1 72 SER n
1 73 LYS n
1 74 ASN n
1 75 LEU n
1 76 CYS n
1 77 ASN n
1 78 ILE n
1 79 PRO n
1 80 CYS n
1 81 SER n
1 82 ALA n
1 83 LEU n
1 84 LEU n
1 85 SER n
1 86 SER n
1 87 ASP n
1 88 ILE n
1 89 THR n
1 90 ALA n
1 91 SER n
1 92 VAL n
1 93 ASN n
1 94 CYS n
1 95 ALA n
1 96 LYS n
1 97 LYS n
1 98 ILE n
1 99 ALA n
1 100 SER n
1 101 GLY n
1 102 GLY n
1 103 ASN n
1 104 GLY n
1 105 MET n
1 106 ASN n
1 107 ALA n
1 108 TRP n
1 109 VAL n
1 110 ALA n
1 111 TRP n
1 112 ARG n
1 113 ASN n
1 114 ARG n
1 115 CYS n
1 116 LYS n
1 117 GLY n
1 118 THR n
1 119 ASP n
1 120 VAL n
1 121 HIS n
1 122 ALA n
1 123 TRP n
1 124 ILE n
1 125 ARG n
1 126 GLY n
1 127 CYS n
1 128 ARG n
1 129 LEU n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num ?
_entity_src_nat.pdbx_end_seq_num ?
_entity_src_nat.common_name turkey
_entity_src_nat.pdbx_organism_scientific 'Meleagris gallopavo'
_entity_src_nat.pdbx_ncbi_taxonomy_id 9103
_entity_src_nat.genus Meleagris
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location ?
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell EGG
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details ?
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/1,3,2/[a2122h-1b_1-5_2*NCC/3=O]/1-1-1/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0
3 2 '[][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ?
2 2 3 NAG C1 O1 2 NAG O4 HO4 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 LYS 1 1 1 LYS LYS A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 TYR 3 3 3 TYR TYR A . n
A 1 4 GLY 4 4 4 GLY GLY A . n
A 1 5 ARG 5 5 5 ARG ARG A . n
A 1 6 CYS 6 6 6 CYS CYS A . n
A 1 7 GLU 7 7 7 GLU GLU A . n
A 1 8 LEU 8 8 8 LEU LEU A . n
A 1 9 ALA 9 9 9 ALA ALA A . n
A 1 10 ALA 10 10 10 ALA ALA A . n
A 1 11 ALA 11 11 11 ALA ALA A . n
A 1 12 MET 12 12 12 MET MET A . n
A 1 13 LYS 13 13 13 LYS LYS A . n
A 1 14 ARG 14 14 14 ARG ARG A . n
A 1 15 LEU 15 15 15 LEU LEU A . n
A 1 16 GLY 16 16 16 GLY GLY A . n
A 1 17 LEU 17 17 17 LEU LEU A . n
A 1 18 ASP 18 18 18 ASP ASP A . n
A 1 19 ASN 19 19 19 ASN ASN A . n
A 1 20 TYR 20 20 20 TYR TYR A . n
A 1 21 ARG 21 21 21 ARG ARG A . n
A 1 22 GLY 22 22 22 GLY GLY A . n
A 1 23 TYR 23 23 23 TYR TYR A . n
A 1 24 SER 24 24 24 SER SER A . n
A 1 25 LEU 25 25 25 LEU LEU A . n
A 1 26 GLY 26 26 26 GLY GLY A . n
A 1 27 ASN 27 27 27 ASN ASN A . n
A 1 28 TRP 28 28 28 TRP TRP A . n
A 1 29 VAL 29 29 29 VAL VAL A . n
A 1 30 CYS 30 30 30 CYS CYS A . n
A 1 31 ALA 31 31 31 ALA ALA A . n
A 1 32 ALA 32 32 32 ALA ALA A . n
A 1 33 LYS 33 33 33 LYS LYS A . n
A 1 34 PHE 34 34 34 PHE PHE A . n
A 1 35 GLU 35 35 35 GLU GLU A . n
A 1 36 SER 36 36 36 SER SER A . n
A 1 37 ASN 37 37 37 ASN ASN A . n
A 1 38 PHE 38 38 38 PHE PHE A . n
A 1 39 ASN 39 39 39 ASN ASN A . n
A 1 40 THR 40 40 40 THR THR A . n
A 1 41 HIS 41 41 41 HIS HIS A . n
A 1 42 ALA 42 42 42 ALA ALA A . n
A 1 43 THR 43 43 43 THR THR A . n
A 1 44 ASN 44 44 44 ASN ASN A . n
A 1 45 ARG 45 45 45 ARG ARG A . n
A 1 46 ASN 46 46 46 ASN ASN A . n
A 1 47 THR 47 47 47 THR THR A . n
A 1 48 ASP 48 48 48 ASP ASP A . n
A 1 49 GLY 49 49 49 GLY GLY A . n
A 1 50 SER 50 50 50 SER SER A . n
A 1 51 THR 51 51 51 THR THR A . n
A 1 52 ASP 52 52 52 ASP ASP A . n
A 1 53 TYR 53 53 53 TYR TYR A . n
A 1 54 GLY 54 54 54 GLY GLY A . n
A 1 55 ILE 55 55 55 ILE ILE A . n
A 1 56 LEU 56 56 56 LEU LEU A . n
A 1 57 GLN 57 57 57 GLN GLN A . n
A 1 58 ILE 58 58 58 ILE ILE A . n
A 1 59 ASN 59 59 59 ASN ASN A . n
A 1 60 SER 60 60 60 SER SER A . n
A 1 61 ARG 61 61 61 ARG ARG A . n
A 1 62 TRP 62 62 62 TRP TRP A . n
A 1 63 TRP 63 63 63 TRP TRP A . n
A 1 64 CYS 64 64 64 CYS CYS A . n
A 1 65 ASN 65 65 65 ASN ASN A . n
A 1 66 ASP 66 66 66 ASP ASP A . n
A 1 67 GLY 67 67 67 GLY GLY A . n
A 1 68 ARG 68 68 68 ARG ARG A . n
A 1 69 THR 69 69 69 THR THR A . n
A 1 70 PRO 70 70 70 PRO PRO A . n
A 1 71 GLY 71 71 71 GLY GLY A . n
A 1 72 SER 72 72 72 SER SER A . n
A 1 73 LYS 73 73 73 LYS LYS A . n
A 1 74 ASN 74 74 74 ASN ASN A . n
A 1 75 LEU 75 75 75 LEU LEU A . n
A 1 76 CYS 76 76 76 CYS CYS A . n
A 1 77 ASN 77 77 77 ASN ASN A . n
A 1 78 ILE 78 78 78 ILE ILE A . n
A 1 79 PRO 79 79 79 PRO PRO A . n
A 1 80 CYS 80 80 80 CYS CYS A . n
A 1 81 SER 81 81 81 SER SER A . n
A 1 82 ALA 82 82 82 ALA ALA A . n
A 1 83 LEU 83 83 83 LEU LEU A . n
A 1 84 LEU 84 84 84 LEU LEU A . n
A 1 85 SER 85 85 85 SER SER A . n
A 1 86 SER 86 86 86 SER SER A . n
A 1 87 ASP 87 87 87 ASP ASP A . n
A 1 88 ILE 88 88 88 ILE ILE A . n
A 1 89 THR 89 89 89 THR THR A . n
A 1 90 ALA 90 90 90 ALA ALA A . n
A 1 91 SER 91 91 91 SER SER A . n
A 1 92 VAL 92 92 92 VAL VAL A . n
A 1 93 ASN 93 93 93 ASN ASN A . n
A 1 94 CYS 94 94 94 CYS CYS A . n
A 1 95 ALA 95 95 95 ALA ALA A . n
A 1 96 LYS 96 96 96 LYS LYS A . n
A 1 97 LYS 97 97 97 LYS LYS A . n
A 1 98 ILE 98 98 98 ILE ILE A . n
A 1 99 ALA 99 99 99 ALA ALA A . n
A 1 100 SER 100 100 100 SER SER A . n
A 1 101 GLY 101 101 101 GLY GLY A . n
A 1 102 GLY 102 102 102 GLY GLY A . n
A 1 103 ASN 103 103 103 ASN ASN A . n
A 1 104 GLY 104 104 104 GLY GLY A . n
A 1 105 MET 105 105 105 MET MET A . n
A 1 106 ASN 106 106 106 ASN ASN A . n
A 1 107 ALA 107 107 107 ALA ALA A . n
A 1 108 TRP 108 108 108 TRP TRP A . n
A 1 109 VAL 109 109 109 VAL VAL A . n
A 1 110 ALA 110 110 110 ALA ALA A . n
A 1 111 TRP 111 111 111 TRP TRP A . n
A 1 112 ARG 112 112 112 ARG ARG A . n
A 1 113 ASN 113 113 113 ASN ASN A . n
A 1 114 ARG 114 114 114 ARG ARG A . n
A 1 115 CYS 115 115 115 CYS CYS A . n
A 1 116 LYS 116 116 116 LYS LYS A . n
A 1 117 GLY 117 117 117 GLY GLY A . n
A 1 118 THR 118 118 118 THR THR A . n
A 1 119 ASP 119 119 119 ASP ASP A . n
A 1 120 VAL 120 120 120 VAL VAL A . n
A 1 121 HIS 121 121 121 HIS HIS A . n
A 1 122 ALA 122 122 122 ALA ALA A . n
A 1 123 TRP 123 123 123 TRP TRP A . n
A 1 124 ILE 124 124 124 ILE ILE A . n
A 1 125 ARG 125 125 125 ARG ARG A . n
A 1 126 GLY 126 126 126 GLY GLY A . n
A 1 127 CYS 127 127 127 CYS CYS A . n
A 1 128 ARG 128 128 128 ARG ARG A . n
A 1 129 LEU 129 129 129 LEU LEU A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NAG 1 B NAG 1 ? NAG 132 n
B 2 NAG 2 B NAG 2 ? NAG 131 n
B 2 NAG 3 B NAG 3 ? NAG 130 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 1 217 217 SO4 SO4 A .
D 4 HOH 1 133 133 HOH HOH A .
D 4 HOH 2 134 134 HOH HOH A .
D 4 HOH 3 135 135 HOH HOH A .
D 4 HOH 4 136 136 HOH HOH A .
D 4 HOH 5 137 137 HOH HOH A .
D 4 HOH 6 138 138 HOH HOH A .
D 4 HOH 7 139 139 HOH HOH A .
D 4 HOH 8 140 140 HOH HOH A .
D 4 HOH 9 141 141 HOH HOH A .
D 4 HOH 10 142 142 HOH HOH A .
D 4 HOH 11 143 143 HOH HOH A .
D 4 HOH 12 144 144 HOH HOH A .
D 4 HOH 13 145 145 HOH HOH A .
D 4 HOH 14 146 146 HOH HOH A .
D 4 HOH 15 147 147 HOH HOH A .
D 4 HOH 16 148 148 HOH HOH A .
D 4 HOH 17 149 149 HOH HOH A .
D 4 HOH 18 150 150 HOH HOH A .
D 4 HOH 19 151 151 HOH HOH A .
D 4 HOH 20 152 152 HOH HOH A .
D 4 HOH 21 153 153 HOH HOH A .
D 4 HOH 22 154 154 HOH HOH A .
D 4 HOH 23 155 155 HOH HOH A .
D 4 HOH 24 156 156 HOH HOH A .
D 4 HOH 25 157 157 HOH HOH A .
D 4 HOH 26 158 158 HOH HOH A .
D 4 HOH 27 159 159 HOH HOH A .
D 4 HOH 28 160 160 HOH HOH A .
D 4 HOH 29 161 161 HOH HOH A .
D 4 HOH 30 162 162 HOH HOH A .
D 4 HOH 31 163 163 HOH HOH A .
D 4 HOH 32 164 164 HOH HOH A .
D 4 HOH 33 165 165 HOH HOH A .
D 4 HOH 34 166 166 HOH HOH A .
D 4 HOH 35 167 167 HOH HOH A .
D 4 HOH 36 168 168 HOH HOH A .
D 4 HOH 37 169 169 HOH HOH A .
D 4 HOH 38 170 170 HOH HOH A .
D 4 HOH 39 171 171 HOH HOH A .
D 4 HOH 40 172 172 HOH HOH A .
D 4 HOH 41 173 173 HOH HOH A .
D 4 HOH 42 174 174 HOH HOH A .
D 4 HOH 43 175 175 HOH HOH A .
D 4 HOH 44 176 176 HOH HOH A .
D 4 HOH 45 177 177 HOH HOH A .
D 4 HOH 46 178 178 HOH HOH A .
D 4 HOH 47 179 179 HOH HOH A .
D 4 HOH 48 180 180 HOH HOH A .
D 4 HOH 49 181 181 HOH HOH A .
D 4 HOH 50 182 182 HOH HOH A .
D 4 HOH 51 183 183 HOH HOH A .
D 4 HOH 52 184 184 HOH HOH A .
D 4 HOH 53 185 185 HOH HOH A .
D 4 HOH 54 186 186 HOH HOH A .
D 4 HOH 55 187 187 HOH HOH A .
D 4 HOH 56 188 188 HOH HOH A .
D 4 HOH 57 189 189 HOH HOH A .
D 4 HOH 58 190 190 HOH HOH A .
D 4 HOH 59 191 191 HOH HOH A .
D 4 HOH 60 192 192 HOH HOH A .
D 4 HOH 61 193 193 HOH HOH A .
D 4 HOH 62 194 194 HOH HOH A .
D 4 HOH 63 195 195 HOH HOH A .
D 4 HOH 64 196 196 HOH HOH A .
D 4 HOH 65 197 197 HOH HOH A .
D 4 HOH 66 198 198 HOH HOH A .
D 4 HOH 67 199 199 HOH HOH A .
D 4 HOH 68 200 200 HOH HOH A .
D 4 HOH 69 201 201 HOH HOH A .
D 4 HOH 70 202 202 HOH HOH A .
D 4 HOH 71 203 203 HOH HOH A .
D 4 HOH 72 204 204 HOH HOH A .
D 4 HOH 73 205 205 HOH HOH A .
D 4 HOH 74 206 206 HOH HOH A .
D 4 HOH 75 207 207 HOH HOH A .
D 4 HOH 76 208 208 HOH HOH A .
D 4 HOH 77 209 209 HOH HOH A .
D 4 HOH 78 210 210 HOH HOH A .
D 4 HOH 79 211 211 HOH HOH A .
D 4 HOH 80 212 212 HOH HOH A .
D 4 HOH 81 213 213 HOH HOH A .
D 4 HOH 82 214 214 HOH HOH A .
D 4 HOH 83 215 215 HOH HOH A .
D 4 HOH 84 216 216 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MADNES 'data collection' . ? 1
MERGEF 'data reduction' . ? 2
X-PLOR 'model building' 3.1 ? 3
X-PLOR refinement 3.1 ? 4
MADNES 'data reduction' . ? 5
MERGEF 'data scaling' . ? 6
X-PLOR phasing 3.1 ? 7
#
_cell.entry_id 1JEF
_cell.length_a 87.490
_cell.length_b 32.940
_cell.length_c 49.000
_cell.angle_alpha 90.00
_cell.angle_beta 119.10
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1JEF
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 5
#
_exptl.entry_id 1JEF
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 2
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.06
_exptl_crystal.density_percent_sol 40.
_exptl_crystal.description 'NATIVE STRUCTURE PDB ENTRY CODE 1LZ3'
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 4.2
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details '2.2M AMMONIUM SULFATE, 10% 1-PROPANOL, PH4.2 1.5% PROTEIN, 2MM (GLCNAC)3'
#
_diffrn.id 1
_diffrn.ambient_temp 293
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'ENRAF-NONIUS FAST'
_diffrn_detector.pdbx_collection_date 1990-02
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'GRAPHITE(002)'
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'ELLIOTT GX-21'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1JEF
_reflns.observed_criterion_sigma_I 0.0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 23.4
_reflns.d_resolution_high 1.75
_reflns.number_obs 10950
_reflns.number_all ?
_reflns.percent_possible_obs 86.
_reflns.pdbx_Rmerge_I_obs 0.058
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 4.6
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.76
_reflns_shell.d_res_low 1.79
_reflns_shell.percent_possible_all ?
_reflns_shell.Rmerge_I_obs 0.225
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 1JEF
_refine.ls_number_reflns_obs 10546
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 10.0
_refine.ls_d_res_high 1.77
_refine.ls_percent_reflns_obs 87.4
_refine.ls_R_factor_obs 0.182
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.182
_refine.ls_R_factor_R_free 0.225
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 6.0
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model 'STRUCTURE IN THE NATIVE CRYSTAL'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 1JEF
_refine_analyze.Luzzati_coordinate_error_obs 0.2
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 994
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 48
_refine_hist.number_atoms_solvent 84
_refine_hist.number_atoms_total 1126
_refine_hist.d_res_high 1.77
_refine_hist.d_res_low 10.0
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 2.7 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it 1.5 ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it 2.0 ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it 1.5 ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it 2.0 ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.77
_refine_ls_shell.d_res_low 1.80
_refine_ls_shell.number_reflns_R_work 110
_refine_ls_shell.R_factor_R_work 0.251
_refine_ls_shell.percent_reflns_obs 19.0
_refine_ls_shell.R_factor_R_free 0.218
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free 0.98
_refine_ls_shell.number_reflns_R_free ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
loop_
_pdbx_xplor_file.serial_no
_pdbx_xplor_file.param_file
_pdbx_xplor_file.topol_file
_pdbx_xplor_file.pdbx_refine_id
1 PARAM19X.PRO TOPH19X.PRO 'X-RAY DIFFRACTION'
2 PARAM19.SOL TOPH19.PEP 'X-RAY DIFFRACTION'
3 PARAM1.CHO TOPH19.SOL 'X-RAY DIFFRACTION'
4 ? TOPH1.CHO 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 1JEF
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1JEF
_struct.title 'TURKEY LYSOZYME COMPLEX WITH (GLCNAC)3'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1JEF
_struct_keywords.pdbx_keywords HYDROLASE
_struct_keywords.text 'ENZYME, HYDROLASE, INHIBITOR COMPLEX, GLYCOSIDASE, BACTERIOLYTIC ENZYME'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code LYC_MELGA
_struct_ref.entity_id 1
_struct_ref.pdbx_db_accession P00703
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_seq_one_letter_code
;MRSLLILVLCFLPLAALGKVYGRCELAAAMKRLGLDNYRGYSLGNWVCAAKFESNFNTHATNRNTDGSTDYGILQINSRW
WCNDGRTPGSKNLCNIPCSALLSSDITASVNCAKKIASGGNGMNAWVAWRNRCKGTDVHAWIRGCRL
;
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1JEF
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 129
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P00703
_struct_ref_seq.db_align_beg 19
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 147
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 129
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 ARG A 5 ? ARG A 14 ? ARG A 5 ARG A 14 1 ? 10
HELX_P HELX_P2 2 TYR A 20 ? GLY A 22 ? TYR A 20 GLY A 22 5 ? 3
HELX_P HELX_P3 3 LEU A 25 ? SER A 36 ? LEU A 25 SER A 36 1 ? 12
HELX_P HELX_P4 4 CYS A 80 ? LEU A 84 ? CYS A 80 LEU A 84 5 ? 5
HELX_P HELX_P5 5 THR A 89 ? ALA A 99 ? THR A 89 ALA A 99 1 ? 11
HELX_P HELX_P6 6 GLY A 104 ? ALA A 107 ? GLY A 104 ALA A 107 5 ? 4
HELX_P HELX_P7 7 VAL A 109 ? ARG A 114 ? VAL A 109 ARG A 114 1 ? 6
HELX_P HELX_P8 8 VAL A 120 ? ILE A 124 ? VAL A 120 ILE A 124 5 ? 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 6 A CYS 127 1_555 ? ? ? ? ? ? ? 2.005 ? ?
disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 30 A CYS 115 1_555 ? ? ? ? ? ? ? 2.020 ? ?
disulf3 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 64 A CYS 80 1_555 ? ? ? ? ? ? ? 2.023 ? ?
disulf4 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 76 A CYS 94 1_555 ? ? ? ? ? ? ? 2.029 ? ?
covale1 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.412 ? ?
covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 2 B NAG 3 1_555 ? ? ? ? ? ? ? 1.427 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 CYS A 6 ? CYS A 127 ? CYS A 6 ? 1_555 CYS A 127 ? 1_555 SG SG . . . None 'Disulfide bridge'
2 CYS A 30 ? CYS A 115 ? CYS A 30 ? 1_555 CYS A 115 ? 1_555 SG SG . . . None 'Disulfide bridge'
3 CYS A 64 ? CYS A 80 ? CYS A 64 ? 1_555 CYS A 80 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 76 ? CYS A 94 ? CYS A 76 ? 1_555 CYS A 94 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
_struct_sheet.id A
_struct_sheet.type ?
_struct_sheet.number_strands 2
_struct_sheet.details ?
#
_struct_sheet_order.sheet_id A
_struct_sheet_order.range_id_1 1
_struct_sheet_order.range_id_2 2
_struct_sheet_order.offset ?
_struct_sheet_order.sense anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 THR A 43 ? ARG A 45 ? THR A 43 ARG A 45
A 2 THR A 51 ? TYR A 53 ? THR A 51 TYR A 53
#
_pdbx_struct_sheet_hbond.sheet_id A
_pdbx_struct_sheet_hbond.range_id_1 1
_pdbx_struct_sheet_hbond.range_id_2 2
_pdbx_struct_sheet_hbond.range_1_label_atom_id O
_pdbx_struct_sheet_hbond.range_1_label_comp_id ASN
_pdbx_struct_sheet_hbond.range_1_label_asym_id A
_pdbx_struct_sheet_hbond.range_1_label_seq_id 44
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code ?
_pdbx_struct_sheet_hbond.range_1_auth_atom_id O
_pdbx_struct_sheet_hbond.range_1_auth_comp_id ASN
_pdbx_struct_sheet_hbond.range_1_auth_asym_id A
_pdbx_struct_sheet_hbond.range_1_auth_seq_id 44
_pdbx_struct_sheet_hbond.range_2_label_atom_id N
_pdbx_struct_sheet_hbond.range_2_label_comp_id ASP
_pdbx_struct_sheet_hbond.range_2_label_asym_id A
_pdbx_struct_sheet_hbond.range_2_label_seq_id 52
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code ?
_pdbx_struct_sheet_hbond.range_2_auth_atom_id N
_pdbx_struct_sheet_hbond.range_2_auth_comp_id ASP
_pdbx_struct_sheet_hbond.range_2_auth_asym_id A
_pdbx_struct_sheet_hbond.range_2_auth_seq_id 52
#
_pdbx_entry_details.entry_id 1JEF
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 NE2
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 HIS
_pdbx_validate_rmsd_bond.auth_seq_id_1 41
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 CD2
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 HIS
_pdbx_validate_rmsd_bond.auth_seq_id_2 41
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.298
_pdbx_validate_rmsd_bond.bond_target_value 1.373
_pdbx_validate_rmsd_bond.bond_deviation -0.075
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.011
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.63 120.30 3.33 0.50 N
2 1 NE A ARG 14 ? A CZ A ARG 14 ? A NH1 A ARG 14 ? A 123.89 120.30 3.59 0.50 N
3 1 NE A ARG 14 ? B CZ A ARG 14 ? B NH1 A ARG 14 ? B 123.49 120.30 3.19 0.50 N
4 1 CD1 A TRP 28 ? ? CG A TRP 28 ? ? CD2 A TRP 28 ? ? 112.51 106.30 6.21 0.80 N
5 1 CE2 A TRP 28 ? ? CD2 A TRP 28 ? ? CG A TRP 28 ? ? 101.16 107.30 -6.14 0.80 N
6 1 CD1 A TRP 62 ? ? CG A TRP 62 ? ? CD2 A TRP 62 ? ? 112.38 106.30 6.08 0.80 N
7 1 CE2 A TRP 62 ? ? CD2 A TRP 62 ? ? CG A TRP 62 ? ? 101.68 107.30 -5.62 0.80 N
8 1 CD1 A TRP 63 ? ? CG A TRP 63 ? ? CD2 A TRP 63 ? ? 113.49 106.30 7.19 0.80 N
9 1 CE2 A TRP 63 ? ? CD2 A TRP 63 ? ? CG A TRP 63 ? ? 101.37 107.30 -5.93 0.80 N
10 1 CD1 A TRP 108 ? ? CG A TRP 108 ? ? CD2 A TRP 108 ? ? 111.76 106.30 5.46 0.80 N
11 1 CE2 A TRP 108 ? ? CD2 A TRP 108 ? ? CG A TRP 108 ? ? 102.50 107.30 -4.80 0.80 N
12 1 CD1 A TRP 111 ? ? CG A TRP 111 ? ? CD2 A TRP 111 ? ? 112.63 106.30 6.33 0.80 N
13 1 CE2 A TRP 111 ? ? CD2 A TRP 111 ? ? CG A TRP 111 ? ? 101.89 107.30 -5.41 0.80 N
14 1 NE A ARG 114 ? ? CZ A ARG 114 ? ? NH1 A ARG 114 ? ? 123.50 120.30 3.20 0.50 N
15 1 CD1 A TRP 123 ? ? CG A TRP 123 ? ? CD2 A TRP 123 ? ? 112.33 106.30 6.03 0.80 N
16 1 CE2 A TRP 123 ? ? CD2 A TRP 123 ? ? CG A TRP 123 ? ? 101.61 107.30 -5.69 0.80 N
17 1 NE A ARG 125 ? ? CZ A ARG 125 ? ? NH1 A ARG 125 ? ? 123.53 120.30 3.23 0.50 N
18 1 NE A ARG 125 ? ? CZ A ARG 125 ? ? NH2 A ARG 125 ? ? 116.72 120.30 -3.58 0.50 N
19 1 CA A ARG 128 ? ? C A ARG 128 ? ? N A LEU 129 ? ? 98.96 117.20 -18.24 2.20 Y
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id ASN
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 74
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi 38.00
_pdbx_validate_torsion.psi 47.58
#
_pdbx_validate_main_chain_plane.id 1
_pdbx_validate_main_chain_plane.PDB_model_num 1
_pdbx_validate_main_chain_plane.auth_comp_id ARG
_pdbx_validate_main_chain_plane.auth_asym_id A
_pdbx_validate_main_chain_plane.auth_seq_id 128
_pdbx_validate_main_chain_plane.PDB_ins_code ?
_pdbx_validate_main_chain_plane.label_alt_id ?
_pdbx_validate_main_chain_plane.improper_torsion_angle 11.27
#
_pdbx_molecule_features.prd_id PRD_900017
_pdbx_molecule_features.name triacetyl-beta-chitotriose
_pdbx_molecule_features.type Oligosaccharide
_pdbx_molecule_features.class Inhibitor
_pdbx_molecule_features.details oligosaccharide
#
_pdbx_molecule.instance_id 1
_pdbx_molecule.prd_id PRD_900017
_pdbx_molecule.asym_id B
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id SO4
_pdbx_struct_special_symmetry.auth_seq_id 217
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id C
_pdbx_struct_special_symmetry.label_comp_id SO4
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
GLN N N N N 88
GLN CA C N S 89
GLN C C N N 90
GLN O O N N 91
GLN CB C N N 92
GLN CG C N N 93
GLN CD C N N 94
GLN OE1 O N N 95
GLN NE2 N N N 96
GLN OXT O N N 97
GLN H H N N 98
GLN H2 H N N 99
GLN HA H N N 100
GLN HB2 H N N 101
GLN HB3 H N N 102
GLN HG2 H N N 103
GLN HG3 H N N 104
GLN HE21 H N N 105
GLN HE22 H N N 106
GLN HXT H N N 107
GLU N N N N 108
GLU CA C N S 109
GLU C C N N 110
GLU O O N N 111
GLU CB C N N 112
GLU CG C N N 113
GLU CD C N N 114
GLU OE1 O N N 115
GLU OE2 O N N 116
GLU OXT O N N 117
GLU H H N N 118
GLU H2 H N N 119
GLU HA H N N 120
GLU HB2 H N N 121
GLU HB3 H N N 122
GLU HG2 H N N 123
GLU HG3 H N N 124
GLU HE2 H N N 125
GLU HXT H N N 126
GLY N N N N 127
GLY CA C N N 128
GLY C C N N 129
GLY O O N N 130
GLY OXT O N N 131
GLY H H N N 132
GLY H2 H N N 133
GLY HA2 H N N 134
GLY HA3 H N N 135
GLY HXT H N N 136
HIS N N N N 137
HIS CA C N S 138
HIS C C N N 139
HIS O O N N 140
HIS CB C N N 141
HIS CG C Y N 142
HIS ND1 N Y N 143
HIS CD2 C Y N 144
HIS CE1 C Y N 145
HIS NE2 N Y N 146
HIS OXT O N N 147
HIS H H N N 148
HIS H2 H N N 149
HIS HA H N N 150
HIS HB2 H N N 151
HIS HB3 H N N 152
HIS HD1 H N N 153
HIS HD2 H N N 154
HIS HE1 H N N 155
HIS HE2 H N N 156
HIS HXT H N N 157
HOH O O N N 158
HOH H1 H N N 159
HOH H2 H N N 160
ILE N N N N 161
ILE CA C N S 162
ILE C C N N 163
ILE O O N N 164
ILE CB C N S 165
ILE CG1 C N N 166
ILE CG2 C N N 167
ILE CD1 C N N 168
ILE OXT O N N 169
ILE H H N N 170
ILE H2 H N N 171
ILE HA H N N 172
ILE HB H N N 173
ILE HG12 H N N 174
ILE HG13 H N N 175
ILE HG21 H N N 176
ILE HG22 H N N 177
ILE HG23 H N N 178
ILE HD11 H N N 179
ILE HD12 H N N 180
ILE HD13 H N N 181
ILE HXT H N N 182
LEU N N N N 183
LEU CA C N S 184
LEU C C N N 185
LEU O O N N 186
LEU CB C N N 187
LEU CG C N N 188
LEU CD1 C N N 189
LEU CD2 C N N 190
LEU OXT O N N 191
LEU H H N N 192
LEU H2 H N N 193
LEU HA H N N 194
LEU HB2 H N N 195
LEU HB3 H N N 196
LEU HG H N N 197
LEU HD11 H N N 198
LEU HD12 H N N 199
LEU HD13 H N N 200
LEU HD21 H N N 201
LEU HD22 H N N 202
LEU HD23 H N N 203
LEU HXT H N N 204
LYS N N N N 205
LYS CA C N S 206
LYS C C N N 207
LYS O O N N 208
LYS CB C N N 209
LYS CG C N N 210
LYS CD C N N 211
LYS CE C N N 212
LYS NZ N N N 213
LYS OXT O N N 214
LYS H H N N 215
LYS H2 H N N 216
LYS HA H N N 217
LYS HB2 H N N 218
LYS HB3 H N N 219
LYS HG2 H N N 220
LYS HG3 H N N 221
LYS HD2 H N N 222
LYS HD3 H N N 223
LYS HE2 H N N 224
LYS HE3 H N N 225
LYS HZ1 H N N 226
LYS HZ2 H N N 227
LYS HZ3 H N N 228
LYS HXT H N N 229
MET N N N N 230
MET CA C N S 231
MET C C N N 232
MET O O N N 233
MET CB C N N 234
MET CG C N N 235
MET SD S N N 236
MET CE C N N 237
MET OXT O N N 238
MET H H N N 239
MET H2 H N N 240
MET HA H N N 241
MET HB2 H N N 242
MET HB3 H N N 243
MET HG2 H N N 244
MET HG3 H N N 245
MET HE1 H N N 246
MET HE2 H N N 247
MET HE3 H N N 248
MET HXT H N N 249
NAG C1 C N R 250
NAG C2 C N R 251
NAG C3 C N R 252
NAG C4 C N S 253
NAG C5 C N R 254
NAG C6 C N N 255
NAG C7 C N N 256
NAG C8 C N N 257
NAG N2 N N N 258
NAG O1 O N N 259
NAG O3 O N N 260
NAG O4 O N N 261
NAG O5 O N N 262
NAG O6 O N N 263
NAG O7 O N N 264
NAG H1 H N N 265
NAG H2 H N N 266
NAG H3 H N N 267
NAG H4 H N N 268
NAG H5 H N N 269
NAG H61 H N N 270
NAG H62 H N N 271
NAG H81 H N N 272
NAG H82 H N N 273
NAG H83 H N N 274
NAG HN2 H N N 275
NAG HO1 H N N 276
NAG HO3 H N N 277
NAG HO4 H N N 278
NAG HO6 H N N 279
PHE N N N N 280
PHE CA C N S 281
PHE C C N N 282
PHE O O N N 283
PHE CB C N N 284
PHE CG C Y N 285
PHE CD1 C Y N 286
PHE CD2 C Y N 287
PHE CE1 C Y N 288
PHE CE2 C Y N 289
PHE CZ C Y N 290
PHE OXT O N N 291
PHE H H N N 292
PHE H2 H N N 293
PHE HA H N N 294
PHE HB2 H N N 295
PHE HB3 H N N 296
PHE HD1 H N N 297
PHE HD2 H N N 298
PHE HE1 H N N 299
PHE HE2 H N N 300
PHE HZ H N N 301
PHE HXT H N N 302
PRO N N N N 303
PRO CA C N S 304
PRO C C N N 305
PRO O O N N 306
PRO CB C N N 307
PRO CG C N N 308
PRO CD C N N 309
PRO OXT O N N 310
PRO H H N N 311
PRO HA H N N 312
PRO HB2 H N N 313
PRO HB3 H N N 314
PRO HG2 H N N 315
PRO HG3 H N N 316
PRO HD2 H N N 317
PRO HD3 H N N 318
PRO HXT H N N 319
SER N N N N 320
SER CA C N S 321
SER C C N N 322
SER O O N N 323
SER CB C N N 324
SER OG O N N 325
SER OXT O N N 326
SER H H N N 327
SER H2 H N N 328
SER HA H N N 329
SER HB2 H N N 330
SER HB3 H N N 331
SER HG H N N 332
SER HXT H N N 333
SO4 S S N N 334
SO4 O1 O N N 335
SO4 O2 O N N 336
SO4 O3 O N N 337
SO4 O4 O N N 338
THR N N N N 339
THR CA C N S 340
THR C C N N 341
THR O O N N 342
THR CB C N R 343
THR OG1 O N N 344
THR CG2 C N N 345
THR OXT O N N 346
THR H H N N 347
THR H2 H N N 348
THR HA H N N 349
THR HB H N N 350
THR HG1 H N N 351
THR HG21 H N N 352
THR HG22 H N N 353
THR HG23 H N N 354
THR HXT H N N 355
TRP N N N N 356
TRP CA C N S 357
TRP C C N N 358
TRP O O N N 359
TRP CB C N N 360
TRP CG C Y N 361
TRP CD1 C Y N 362
TRP CD2 C Y N 363
TRP NE1 N Y N 364
TRP CE2 C Y N 365
TRP CE3 C Y N 366
TRP CZ2 C Y N 367
TRP CZ3 C Y N 368
TRP CH2 C Y N 369
TRP OXT O N N 370
TRP H H N N 371
TRP H2 H N N 372
TRP HA H N N 373
TRP HB2 H N N 374
TRP HB3 H N N 375
TRP HD1 H N N 376
TRP HE1 H N N 377
TRP HE3 H N N 378
TRP HZ2 H N N 379
TRP HZ3 H N N 380
TRP HH2 H N N 381
TRP HXT H N N 382
TYR N N N N 383
TYR CA C N S 384
TYR C C N N 385
TYR O O N N 386
TYR CB C N N 387
TYR CG C Y N 388
TYR CD1 C Y N 389
TYR CD2 C Y N 390
TYR CE1 C Y N 391
TYR CE2 C Y N 392
TYR CZ C Y N 393
TYR OH O N N 394
TYR OXT O N N 395
TYR H H N N 396
TYR H2 H N N 397
TYR HA H N N 398
TYR HB2 H N N 399
TYR HB3 H N N 400
TYR HD1 H N N 401
TYR HD2 H N N 402
TYR HE1 H N N 403
TYR HE2 H N N 404
TYR HH H N N 405
TYR HXT H N N 406
VAL N N N N 407
VAL CA C N S 408
VAL C C N N 409
VAL O O N N 410
VAL CB C N N 411
VAL CG1 C N N 412
VAL CG2 C N N 413
VAL OXT O N N 414
VAL H H N N 415
VAL H2 H N N 416
VAL HA H N N 417
VAL HB H N N 418
VAL HG11 H N N 419
VAL HG12 H N N 420
VAL HG13 H N N 421
VAL HG21 H N N 422
VAL HG22 H N N 423
VAL HG23 H N N 424
VAL HXT H N N 425
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GLN N CA sing N N 83
GLN N H sing N N 84
GLN N H2 sing N N 85
GLN CA C sing N N 86
GLN CA CB sing N N 87
GLN CA HA sing N N 88
GLN C O doub N N 89
GLN C OXT sing N N 90
GLN CB CG sing N N 91
GLN CB HB2 sing N N 92
GLN CB HB3 sing N N 93
GLN CG CD sing N N 94
GLN CG HG2 sing N N 95
GLN CG HG3 sing N N 96
GLN CD OE1 doub N N 97
GLN CD NE2 sing N N 98
GLN NE2 HE21 sing N N 99
GLN NE2 HE22 sing N N 100
GLN OXT HXT sing N N 101
GLU N CA sing N N 102
GLU N H sing N N 103
GLU N H2 sing N N 104
GLU CA C sing N N 105
GLU CA CB sing N N 106
GLU CA HA sing N N 107
GLU C O doub N N 108
GLU C OXT sing N N 109
GLU CB CG sing N N 110
GLU CB HB2 sing N N 111
GLU CB HB3 sing N N 112
GLU CG CD sing N N 113
GLU CG HG2 sing N N 114
GLU CG HG3 sing N N 115
GLU CD OE1 doub N N 116
GLU CD OE2 sing N N 117
GLU OE2 HE2 sing N N 118
GLU OXT HXT sing N N 119
GLY N CA sing N N 120
GLY N H sing N N 121
GLY N H2 sing N N 122
GLY CA C sing N N 123
GLY CA HA2 sing N N 124
GLY CA HA3 sing N N 125
GLY C O doub N N 126
GLY C OXT sing N N 127
GLY OXT HXT sing N N 128
HIS N CA sing N N 129
HIS N H sing N N 130
HIS N H2 sing N N 131
HIS CA C sing N N 132
HIS CA CB sing N N 133
HIS CA HA sing N N 134
HIS C O doub N N 135
HIS C OXT sing N N 136
HIS CB CG sing N N 137
HIS CB HB2 sing N N 138
HIS CB HB3 sing N N 139
HIS CG ND1 sing Y N 140
HIS CG CD2 doub Y N 141
HIS ND1 CE1 doub Y N 142
HIS ND1 HD1 sing N N 143
HIS CD2 NE2 sing Y N 144
HIS CD2 HD2 sing N N 145
HIS CE1 NE2 sing Y N 146
HIS CE1 HE1 sing N N 147
HIS NE2 HE2 sing N N 148
HIS OXT HXT sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
ILE N CA sing N N 152
ILE N H sing N N 153
ILE N H2 sing N N 154
ILE CA C sing N N 155
ILE CA CB sing N N 156
ILE CA HA sing N N 157
ILE C O doub N N 158
ILE C OXT sing N N 159
ILE CB CG1 sing N N 160
ILE CB CG2 sing N N 161
ILE CB HB sing N N 162
ILE CG1 CD1 sing N N 163
ILE CG1 HG12 sing N N 164
ILE CG1 HG13 sing N N 165
ILE CG2 HG21 sing N N 166
ILE CG2 HG22 sing N N 167
ILE CG2 HG23 sing N N 168
ILE CD1 HD11 sing N N 169
ILE CD1 HD12 sing N N 170
ILE CD1 HD13 sing N N 171
ILE OXT HXT sing N N 172
LEU N CA sing N N 173
LEU N H sing N N 174
LEU N H2 sing N N 175
LEU CA C sing N N 176
LEU CA CB sing N N 177
LEU CA HA sing N N 178
LEU C O doub N N 179
LEU C OXT sing N N 180
LEU CB CG sing N N 181
LEU CB HB2 sing N N 182
LEU CB HB3 sing N N 183
LEU CG CD1 sing N N 184
LEU CG CD2 sing N N 185
LEU CG HG sing N N 186
LEU CD1 HD11 sing N N 187
LEU CD1 HD12 sing N N 188
LEU CD1 HD13 sing N N 189
LEU CD2 HD21 sing N N 190
LEU CD2 HD22 sing N N 191
LEU CD2 HD23 sing N N 192
LEU OXT HXT sing N N 193
LYS N CA sing N N 194
LYS N H sing N N 195
LYS N H2 sing N N 196
LYS CA C sing N N 197
LYS CA CB sing N N 198
LYS CA HA sing N N 199
LYS C O doub N N 200
LYS C OXT sing N N 201
LYS CB CG sing N N 202
LYS CB HB2 sing N N 203
LYS CB HB3 sing N N 204
LYS CG CD sing N N 205
LYS CG HG2 sing N N 206
LYS CG HG3 sing N N 207
LYS CD CE sing N N 208
LYS CD HD2 sing N N 209
LYS CD HD3 sing N N 210
LYS CE NZ sing N N 211
LYS CE HE2 sing N N 212
LYS CE HE3 sing N N 213
LYS NZ HZ1 sing N N 214
LYS NZ HZ2 sing N N 215
LYS NZ HZ3 sing N N 216
LYS OXT HXT sing N N 217
MET N CA sing N N 218
MET N H sing N N 219
MET N H2 sing N N 220
MET CA C sing N N 221
MET CA CB sing N N 222
MET CA HA sing N N 223
MET C O doub N N 224
MET C OXT sing N N 225
MET CB CG sing N N 226
MET CB HB2 sing N N 227
MET CB HB3 sing N N 228
MET CG SD sing N N 229
MET CG HG2 sing N N 230
MET CG HG3 sing N N 231
MET SD CE sing N N 232
MET CE HE1 sing N N 233
MET CE HE2 sing N N 234
MET CE HE3 sing N N 235
MET OXT HXT sing N N 236
NAG C1 C2 sing N N 237
NAG C1 O1 sing N N 238
NAG C1 O5 sing N N 239
NAG C1 H1 sing N N 240
NAG C2 C3 sing N N 241
NAG C2 N2 sing N N 242
NAG C2 H2 sing N N 243
NAG C3 C4 sing N N 244
NAG C3 O3 sing N N 245
NAG C3 H3 sing N N 246
NAG C4 C5 sing N N 247
NAG C4 O4 sing N N 248
NAG C4 H4 sing N N 249
NAG C5 C6 sing N N 250
NAG C5 O5 sing N N 251
NAG C5 H5 sing N N 252
NAG C6 O6 sing N N 253
NAG C6 H61 sing N N 254
NAG C6 H62 sing N N 255
NAG C7 C8 sing N N 256
NAG C7 N2 sing N N 257
NAG C7 O7 doub N N 258
NAG C8 H81 sing N N 259
NAG C8 H82 sing N N 260
NAG C8 H83 sing N N 261
NAG N2 HN2 sing N N 262
NAG O1 HO1 sing N N 263
NAG O3 HO3 sing N N 264
NAG O4 HO4 sing N N 265
NAG O6 HO6 sing N N 266
PHE N CA sing N N 267
PHE N H sing N N 268
PHE N H2 sing N N 269
PHE CA C sing N N 270
PHE CA CB sing N N 271
PHE CA HA sing N N 272
PHE C O doub N N 273
PHE C OXT sing N N 274
PHE CB CG sing N N 275
PHE CB HB2 sing N N 276
PHE CB HB3 sing N N 277
PHE CG CD1 doub Y N 278
PHE CG CD2 sing Y N 279
PHE CD1 CE1 sing Y N 280
PHE CD1 HD1 sing N N 281
PHE CD2 CE2 doub Y N 282
PHE CD2 HD2 sing N N 283
PHE CE1 CZ doub Y N 284
PHE CE1 HE1 sing N N 285
PHE CE2 CZ sing Y N 286
PHE CE2 HE2 sing N N 287
PHE CZ HZ sing N N 288
PHE OXT HXT sing N N 289
PRO N CA sing N N 290
PRO N CD sing N N 291
PRO N H sing N N 292
PRO CA C sing N N 293
PRO CA CB sing N N 294
PRO CA HA sing N N 295
PRO C O doub N N 296
PRO C OXT sing N N 297
PRO CB CG sing N N 298
PRO CB HB2 sing N N 299
PRO CB HB3 sing N N 300
PRO CG CD sing N N 301
PRO CG HG2 sing N N 302
PRO CG HG3 sing N N 303
PRO CD HD2 sing N N 304
PRO CD HD3 sing N N 305
PRO OXT HXT sing N N 306
SER N CA sing N N 307
SER N H sing N N 308
SER N H2 sing N N 309
SER CA C sing N N 310
SER CA CB sing N N 311
SER CA HA sing N N 312
SER C O doub N N 313
SER C OXT sing N N 314
SER CB OG sing N N 315
SER CB HB2 sing N N 316
SER CB HB3 sing N N 317
SER OG HG sing N N 318
SER OXT HXT sing N N 319
SO4 S O1 doub N N 320
SO4 S O2 doub N N 321
SO4 S O3 sing N N 322
SO4 S O4 sing N N 323
THR N CA sing N N 324
THR N H sing N N 325
THR N H2 sing N N 326
THR CA C sing N N 327
THR CA CB sing N N 328
THR CA HA sing N N 329
THR C O doub N N 330
THR C OXT sing N N 331
THR CB OG1 sing N N 332
THR CB CG2 sing N N 333
THR CB HB sing N N 334
THR OG1 HG1 sing N N 335
THR CG2 HG21 sing N N 336
THR CG2 HG22 sing N N 337
THR CG2 HG23 sing N N 338
THR OXT HXT sing N N 339
TRP N CA sing N N 340
TRP N H sing N N 341
TRP N H2 sing N N 342
TRP CA C sing N N 343
TRP CA CB sing N N 344
TRP CA HA sing N N 345
TRP C O doub N N 346
TRP C OXT sing N N 347
TRP CB CG sing N N 348
TRP CB HB2 sing N N 349
TRP CB HB3 sing N N 350
TRP CG CD1 doub Y N 351
TRP CG CD2 sing Y N 352
TRP CD1 NE1 sing Y N 353
TRP CD1 HD1 sing N N 354
TRP CD2 CE2 doub Y N 355
TRP CD2 CE3 sing Y N 356
TRP NE1 CE2 sing Y N 357
TRP NE1 HE1 sing N N 358
TRP CE2 CZ2 sing Y N 359
TRP CE3 CZ3 doub Y N 360
TRP CE3 HE3 sing N N 361
TRP CZ2 CH2 doub Y N 362
TRP CZ2 HZ2 sing N N 363
TRP CZ3 CH2 sing Y N 364
TRP CZ3 HZ3 sing N N 365
TRP CH2 HH2 sing N N 366
TRP OXT HXT sing N N 367
TYR N CA sing N N 368
TYR N H sing N N 369
TYR N H2 sing N N 370
TYR CA C sing N N 371
TYR CA CB sing N N 372
TYR CA HA sing N N 373
TYR C O doub N N 374
TYR C OXT sing N N 375
TYR CB CG sing N N 376
TYR CB HB2 sing N N 377
TYR CB HB3 sing N N 378
TYR CG CD1 doub Y N 379
TYR CG CD2 sing Y N 380
TYR CD1 CE1 sing Y N 381
TYR CD1 HD1 sing N N 382
TYR CD2 CE2 doub Y N 383
TYR CD2 HD2 sing N N 384
TYR CE1 CZ doub Y N 385
TYR CE1 HE1 sing N N 386
TYR CE2 CZ sing Y N 387
TYR CE2 HE2 sing N N 388
TYR CZ OH sing N N 389
TYR OH HH sing N N 390
TYR OXT HXT sing N N 391
VAL N CA sing N N 392
VAL N H sing N N 393
VAL N H2 sing N N 394
VAL CA C sing N N 395
VAL CA CB sing N N 396
VAL CA HA sing N N 397
VAL C O doub N N 398
VAL C OXT sing N N 399
VAL CB CG1 sing N N 400
VAL CB CG2 sing N N 401
VAL CB HB sing N N 402
VAL CG1 HG11 sing N N 403
VAL CG1 HG12 sing N N 404
VAL CG1 HG13 sing N N 405
VAL CG2 HG21 sing N N 406
VAL CG2 HG22 sing N N 407
VAL CG2 HG23 sing N N 408
VAL OXT HXT sing N N 409
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NAG 1 n
2 NAG 2 n
2 NAG 3 n
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details 'STRUCTURE IN THE NATIVE CRYSTAL'
#
_atom_sites.entry_id 1JEF
_atom_sites.fract_transf_matrix[1][1] 0.011430
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.006362
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.030358
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.023356
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_