data_1JES # _entry.id 1JES # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JES pdb_00001jes 10.2210/pdb1jes/pdb NDB ZD0006 ? ? RCSB RCSB013688 ? ? WWPDB D_1000013688 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-11-23 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.conn_type_id' 19 4 'Structure model' '_struct_conn.id' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_conn_type.id' 37 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JES _pdbx_database_status.recvd_initial_deposition_date 2001-06-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1BNA ;structure of 5'-(CpGpCpGpApApTpTpCpGpCpG)-3' ; unspecified PDB 2ZNA 'theoretical model of Z(I)-DNA' unspecified PDB 3ZNA 'theoretical model of Z(II)-DNA' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Atwell, S.' 1 'Meggers, E.' 2 'Spraggon, G.' 3 'Schultz, P.G.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of a Copper-Mediated Base Pair in DNA' J.Am.Chem.Soc. 123 12364 12367 2001 JACSAT US 0002-7863 0004 ? 11734038 10.1021/ja011822e 1 'A Novel Copper-Mediated DNA Base Pair' J.Am.Chem.Soc. 122 10714 10715 2000 JACSAT US 0002-7863 0004 ? ? 10.1021/ja0025806 2 'Left-handed double helical DNA: variations in the backbone conformation' Science 211 171 176 1981 SCIEAS US 0036-8075 0038 ? ? ? 3 'Structure of a B-DNA dodecamer: conformation and dynamics' Proc.Natl.Acad.Sci.USA 78 2179 2183 1981 PNASA6 US 0027-8424 0040 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Atwell, S.' 1 ? primary 'Meggers, E.' 2 ? primary 'Spraggon, G.' 3 ? primary 'Schultz, P.G.' 4 ? 1 'Meggers, E.' 5 ? 1 'Holland, P.L.' 6 ? 1 'Tolman, W.B.' 7 ? 1 'Romesberg, F.E.' 8 ? 1 'Schultz, P.G.' 9 ? 2 'Wang, A.G.-J.' 10 ? 2 'Quigley, G.J.' 11 ? 2 'Kolpak, F.J.' 12 ? 2 'van Der Marel, G.' 13 ? 2 'van Boom, J.H.' 14 ? 2 'Rich, A.' 15 ? 3 'Drew, H.R.' 16 ? 3 'Wing, R.M.' 17 ? 3 'Takano, T.' 18 ? 3 'Broka, C.' 19 ? 3 'Tanaka, S.' 20 ? 3 'Itakura, K.' 21 ? 3 'Dickerson, R.E.' 22 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*(DPY)P*AP*TP*(DRP)P*CP*GP*CP*G)-3'" 3648.371 2 ? ? ? ? 2 non-polymer syn 'COPPER (II) ION' 63.546 2 ? ? ? ? 3 water nat water 18.015 82 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DPY)(DA)(DT)(DRP)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGNATNCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DPY n 1 6 DA n 1 7 DT n 1 8 DRP n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DPY 'DNA linking' . ;2-DEOXYRIBOFURANOSYL-PYRIDINE-2,6-DICARBOXYLIC ACID-5'-MONOPHOSPHATE ; ? 'C12 H14 N O10 P' 363.214 DRP 'DNA linking' . "2-DEOXYRIBOFURANOSYL-PYRIDINE-5'-MONOPHOSPHATE" ? 'C10 H14 N O6 P' 275.195 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DC 3 3 3 DC CYT A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DPY 5 5 5 DPY PDC A . n A 1 6 DA 6 6 6 DA ADE A . n A 1 7 DT 7 7 7 DT THY A . n A 1 8 DRP 8 8 8 DRP PYR A . n A 1 9 DC 9 9 9 DC CYT A . n A 1 10 DG 10 10 10 DG GUA A . n A 1 11 DC 11 11 11 DC CYT A . n A 1 12 DG 12 12 12 DG GUA A . n B 1 1 DC 1 13 13 DC CYT B . n B 1 2 DG 2 14 14 DG GUA B . n B 1 3 DC 3 15 15 DC CYT B . n B 1 4 DG 4 16 16 DG GUA B . n B 1 5 DPY 5 17 17 DPY PDC B . n B 1 6 DA 6 18 18 DA ADE B . n B 1 7 DT 7 19 19 DT THY B . n B 1 8 DRP 8 20 20 DRP PYR B . n B 1 9 DC 9 21 21 DC CYT B . n B 1 10 DG 10 22 22 DG GUA B . n B 1 11 DC 11 23 23 DC CYT B . n B 1 12 DG 12 24 24 DG GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU 1 25 25 CU CU2 A . D 2 CU 1 26 26 CU CU2 B . E 3 HOH 1 29 29 HOH TIP A . E 3 HOH 2 31 31 HOH TIP A . E 3 HOH 3 33 33 HOH TIP A . E 3 HOH 4 35 35 HOH TIP A . E 3 HOH 5 36 36 HOH TIP A . E 3 HOH 6 37 37 HOH TIP A . E 3 HOH 7 38 38 HOH TIP A . E 3 HOH 8 45 45 HOH TIP A . E 3 HOH 9 46 46 HOH TIP A . E 3 HOH 10 47 47 HOH TIP A . E 3 HOH 11 48 48 HOH TIP A . E 3 HOH 12 49 49 HOH TIP A . E 3 HOH 13 50 50 HOH TIP A . E 3 HOH 14 54 54 HOH TIP A . E 3 HOH 15 56 56 HOH TIP A . E 3 HOH 16 57 57 HOH TIP A . E 3 HOH 17 58 58 HOH TIP A . E 3 HOH 18 59 59 HOH TIP A . E 3 HOH 19 60 60 HOH TIP A . E 3 HOH 20 61 61 HOH TIP A . E 3 HOH 21 63 63 HOH TIP A . E 3 HOH 22 64 64 HOH TIP A . E 3 HOH 23 66 66 HOH TIP A . E 3 HOH 24 70 70 HOH TIP A . E 3 HOH 25 75 75 HOH TIP A . E 3 HOH 26 78 78 HOH TIP A . E 3 HOH 27 81 81 HOH TIP A . E 3 HOH 28 83 83 HOH TIP A . E 3 HOH 29 84 84 HOH TIP A . E 3 HOH 30 88 88 HOH TIP A . E 3 HOH 31 89 89 HOH TIP A . E 3 HOH 32 92 92 HOH TIP A . E 3 HOH 33 94 94 HOH TIP A . E 3 HOH 34 95 95 HOH TIP A . E 3 HOH 35 96 96 HOH TIP A . E 3 HOH 36 97 97 HOH TIP A . E 3 HOH 37 98 98 HOH TIP A . E 3 HOH 38 99 99 HOH TIP A . E 3 HOH 39 102 102 HOH TIP A . E 3 HOH 40 103 103 HOH TIP A . E 3 HOH 41 106 106 HOH TIP A . E 3 HOH 42 107 107 HOH TIP A . E 3 HOH 43 108 108 HOH TIP A . F 3 HOH 1 27 27 HOH TIP B . F 3 HOH 2 28 28 HOH TIP B . F 3 HOH 3 30 30 HOH TIP B . F 3 HOH 4 32 32 HOH TIP B . F 3 HOH 5 34 34 HOH TIP B . F 3 HOH 6 39 39 HOH TIP B . F 3 HOH 7 40 40 HOH TIP B . F 3 HOH 8 41 41 HOH TIP B . F 3 HOH 9 42 42 HOH TIP B . F 3 HOH 10 43 43 HOH TIP B . F 3 HOH 11 44 44 HOH TIP B . F 3 HOH 12 51 51 HOH TIP B . F 3 HOH 13 52 52 HOH TIP B . F 3 HOH 14 53 53 HOH TIP B . F 3 HOH 15 55 55 HOH TIP B . F 3 HOH 16 62 62 HOH TIP B . F 3 HOH 17 65 65 HOH TIP B . F 3 HOH 18 67 67 HOH TIP B . F 3 HOH 19 68 68 HOH TIP B . F 3 HOH 20 69 69 HOH TIP B . F 3 HOH 21 71 71 HOH TIP B . F 3 HOH 22 72 72 HOH TIP B . F 3 HOH 23 73 73 HOH TIP B . F 3 HOH 24 74 74 HOH TIP B . F 3 HOH 25 76 76 HOH TIP B . F 3 HOH 26 77 77 HOH TIP B . F 3 HOH 27 79 79 HOH TIP B . F 3 HOH 28 80 80 HOH TIP B . F 3 HOH 29 82 82 HOH TIP B . F 3 HOH 30 85 85 HOH TIP B . F 3 HOH 31 86 86 HOH TIP B . F 3 HOH 32 87 87 HOH TIP B . F 3 HOH 33 90 90 HOH TIP B . F 3 HOH 34 91 91 HOH TIP B . F 3 HOH 35 93 93 HOH TIP B . F 3 HOH 36 100 100 HOH TIP B . F 3 HOH 37 101 101 HOH TIP B . F 3 HOH 38 104 104 HOH TIP B . F 3 HOH 39 105 105 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1JES _cell.length_a 25.343 _cell.length_b 34.359 _cell.length_c 31.093 _cell.angle_alpha 90.00 _cell.angle_beta 101.13 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JES _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 1JES _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.82 _exptl_crystal.density_percent_sol 32.43 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;10% MPD, 40 mM Na Cacodylate, 12 mM Spermine tetra-HCl, 80 mM NaCl, 20 mM MgCl2, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'Na Cacodylate' ? ? ? 1 3 1 'Spermine tetra-HCl' ? ? ? 1 4 1 NaCl ? ? ? 1 5 1 MgCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 140 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-04-06 _diffrn_detector.details 'Curved Si (111)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.37991 1.0 2 1.37791 1.0 3 1.0 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.37991,1.37791,1.0 # _reflns.entry_id 1JES _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.5 _reflns.number_obs 47190 _reflns.number_all 47272 _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0960000 _reflns.pdbx_netI_over_sigmaI 46.7 _reflns.B_iso_Wilson_estimate 14.058 _reflns.pdbx_redundancy 5.5 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.49 _reflns_shell.d_res_low 1.54 _reflns_shell.percent_possible_all 84.1 _reflns_shell.Rmerge_I_obs 0.6860000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JES _refine.ls_number_reflns_obs 8520 _refine.ls_number_reflns_all 8520 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 1.5 _refine.ls_percent_reflns_obs 98 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1690000 _refine.ls_R_factor_R_free 0.2020000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8 _refine.ls_number_reflns_R_free 682 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.399 _refine.aniso_B[2][2] -0.007 _refine.aniso_B[3][3] 0.406 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.784 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'free r' _refine.details ;The fofc maps indicated an alternate conformation for the phosphate of B23, and so the structure was refined with two conformations for the phosphate of B23 (excepting the O5') and most of residue B22 (excepting O5'), each with 0.5 occupancy. ; _refine.pdbx_starting_model 'initial map fit with mononucleotides' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ;G. Parkinson, J. Vojtechovsky, L. Clowney, A.T. Brunger, H.M. Berman, New Parameters for the Refinement of Nucleic Acid Containing Structures, Acta Cryst. D, 52, 57-64 (1996). ; _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'Random 8%' _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 505 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 589 _refine_hist.d_res_high 1.5 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.00893 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.56 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1JES _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1JES _struct.title 'Crystal Structure of a Copper-Mediated Base Pair in DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JES _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Cu, copper, DNA, Z-DNA, dodecamer, duplex, unnatural, designed' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1JES _struct_ref.pdbx_db_accession 1JES _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JES A 1 ? 12 ? 1JES 1 ? 12 ? 1 12 2 1 1JES B 1 ? 12 ? 1JES 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A DPY 5 P ? ? A DG 4 A DPY 5 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale2 covale both ? A DPY 5 "O3'" ? ? ? 1_555 A DA 6 P ? ? A DPY 5 A DA 6 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale3 covale both ? A DT 7 "O3'" ? ? ? 1_555 A DRP 8 P ? ? A DT 7 A DRP 8 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale4 covale both ? A DRP 8 "O3'" ? ? ? 1_555 A DC 9 P ? ? A DRP 8 A DC 9 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale5 covale both ? B DG 4 "O3'" ? ? ? 1_555 B DPY 5 P ? ? B DG 16 B DPY 17 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale6 covale both ? B DPY 5 "O3'" ? ? ? 1_555 B DA 6 P ? ? B DPY 17 B DA 18 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale7 covale both ? B DT 7 "O3'" ? ? ? 1_555 B DRP 8 P ? ? B DT 19 B DRP 20 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale8 covale both ? B DRP 8 "O3'" ? ? ? 1_555 B DC 9 P ? ? B DRP 20 B DC 21 1_555 ? ? ? ? ? ? ? 1.602 ? ? metalc1 metalc ? ? A DPY 5 N3 ? ? ? 1_555 C CU . CU ? ? A DPY 5 A CU 25 1_555 ? ? ? ? ? ? ? 1.906 ? ? metalc2 metalc ? ? A DPY 5 O72 ? ? ? 1_555 C CU . CU ? ? A DPY 5 A CU 25 1_555 ? ? ? ? ? ? ? 2.281 ? ? metalc3 metalc ? ? A DPY 5 O82 ? ? ? 1_555 C CU . CU ? ? A DPY 5 A CU 25 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc4 metalc ? ? A DRP 8 N3 ? ? ? 1_555 D CU . CU ? ? A DRP 8 B CU 26 1_555 ? ? ? ? ? ? ? 1.858 ? ? metalc5 metalc ? ? C CU . CU ? ? ? 1_555 B DRP 8 N3 ? ? A CU 25 B DRP 20 1_555 ? ? ? ? ? ? ? 1.893 ? ? metalc6 metalc ? ? B DPY 5 N3 ? ? ? 1_555 D CU . CU ? ? B DPY 17 B CU 26 1_555 ? ? ? ? ? ? ? 1.921 ? ? metalc7 metalc ? ? B DPY 5 O72 ? ? ? 1_555 D CU . CU ? ? B DPY 17 B CU 26 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc8 metalc ? ? B DPY 5 O82 ? ? ? 1_555 D CU . CU ? ? B DPY 17 B CU 26 1_555 ? ? ? ? ? ? ? 2.261 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 A ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 A ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 A ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? A DPY 5 ? A DPY 5 ? 1_555 CU ? C CU . ? A CU 25 ? 1_555 O72 ? A DPY 5 ? A DPY 5 ? 1_555 74.6 ? 2 N3 ? A DPY 5 ? A DPY 5 ? 1_555 CU ? C CU . ? A CU 25 ? 1_555 O82 ? A DPY 5 ? A DPY 5 ? 1_555 79.0 ? 3 O72 ? A DPY 5 ? A DPY 5 ? 1_555 CU ? C CU . ? A CU 25 ? 1_555 O82 ? A DPY 5 ? A DPY 5 ? 1_555 152.8 ? 4 N3 ? A DPY 5 ? A DPY 5 ? 1_555 CU ? C CU . ? A CU 25 ? 1_555 N3 ? B DRP 8 ? B DRP 20 ? 1_555 171.7 ? 5 O72 ? A DPY 5 ? A DPY 5 ? 1_555 CU ? C CU . ? A CU 25 ? 1_555 N3 ? B DRP 8 ? B DRP 20 ? 1_555 97.5 ? 6 O82 ? A DPY 5 ? A DPY 5 ? 1_555 CU ? C CU . ? A CU 25 ? 1_555 N3 ? B DRP 8 ? B DRP 20 ? 1_555 109.1 ? 7 N3 ? A DRP 8 ? A DRP 8 ? 1_555 CU ? D CU . ? B CU 26 ? 1_555 N3 ? B DPY 5 ? B DPY 17 ? 1_555 171.6 ? 8 N3 ? A DRP 8 ? A DRP 8 ? 1_555 CU ? D CU . ? B CU 26 ? 1_555 O72 ? B DPY 5 ? B DPY 17 ? 1_555 97.1 ? 9 N3 ? B DPY 5 ? B DPY 17 ? 1_555 CU ? D CU . ? B CU 26 ? 1_555 O72 ? B DPY 5 ? B DPY 17 ? 1_555 75.5 ? 10 N3 ? A DRP 8 ? A DRP 8 ? 1_555 CU ? D CU . ? B CU 26 ? 1_555 O82 ? B DPY 5 ? B DPY 17 ? 1_555 108.7 ? 11 N3 ? B DPY 5 ? B DPY 17 ? 1_555 CU ? D CU . ? B CU 26 ? 1_555 O82 ? B DPY 5 ? B DPY 17 ? 1_555 79.1 ? 12 O72 ? B DPY 5 ? B DPY 17 ? 1_555 CU ? D CU . ? B CU 26 ? 1_555 O82 ? B DPY 5 ? B DPY 17 ? 1_555 153.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CU 25 ? 4 'BINDING SITE FOR RESIDUE CU A 25' AC2 Software B CU 26 ? 4 'BINDING SITE FOR RESIDUE CU B 26' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 4 DPY A 5 ? DPY A 5 . ? 1_555 ? 3 AC1 4 DT B 7 ? DT B 19 . ? 1_555 ? 4 AC1 4 DRP B 8 ? DRP B 20 . ? 1_555 ? 5 AC2 4 DT A 7 ? DT A 7 . ? 1_555 ? 6 AC2 4 DRP A 8 ? DRP A 8 . ? 1_555 ? 7 AC2 4 DG B 4 ? DG B 16 . ? 1_555 ? 8 AC2 4 DPY B 5 ? DPY B 17 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CU CU CU N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DPY P P N N 109 DPY O1P O N N 110 DPY O2P O N N 111 DPY "O5'" O N N 112 DPY C1 C Y N 113 DPY C2 C Y N 114 DPY C7 C N N 115 DPY O71 O N N 116 DPY O72 O N N 117 DPY N3 N Y N 118 DPY C4 C Y N 119 DPY C8 C N N 120 DPY O81 O N N 121 DPY O82 O N N 122 DPY C5 C Y N 123 DPY C6 C Y N 124 DPY "C2'" C N N 125 DPY "C5'" C N N 126 DPY "C4'" C N R 127 DPY "O4'" O N N 128 DPY "C1'" C N R 129 DPY "C3'" C N S 130 DPY "O3'" O N N 131 DPY O3P O N N 132 DPY HOP2 H N N 133 DPY H72 H N N 134 DPY H82 H N N 135 DPY H5 H N N 136 DPY H6 H N N 137 DPY "H2'1" H N N 138 DPY "H2'2" H N N 139 DPY "H5'1" H N N 140 DPY "H5'2" H N N 141 DPY "H4'" H N N 142 DPY "H1'" H N N 143 DPY "H3'" H N N 144 DPY H3T H N N 145 DPY HOP3 H N N 146 DRP P P N N 147 DRP O1P O N N 148 DRP O2P O N N 149 DRP "O5'" O N N 150 DRP C1 C Y N 151 DRP C2 C Y N 152 DRP N3 N Y N 153 DRP C4 C Y N 154 DRP C5 C Y N 155 DRP C6 C Y N 156 DRP "C2'" C N N 157 DRP "C5'" C N N 158 DRP "C4'" C N R 159 DRP "O4'" O N N 160 DRP "C1'" C N R 161 DRP "C3'" C N S 162 DRP "O3'" O N N 163 DRP O3P O N N 164 DRP HOP2 H N N 165 DRP H2 H N N 166 DRP H4 H N N 167 DRP H5 H N N 168 DRP H6 H N N 169 DRP "H2'1" H N N 170 DRP "H2'2" H N N 171 DRP "H5'1" H N N 172 DRP "H5'2" H N N 173 DRP "H4'" H N N 174 DRP "H1'" H N N 175 DRP "H3'" H N N 176 DRP H3T H N N 177 DRP HOP3 H N N 178 DT OP3 O N N 179 DT P P N N 180 DT OP1 O N N 181 DT OP2 O N N 182 DT "O5'" O N N 183 DT "C5'" C N N 184 DT "C4'" C N R 185 DT "O4'" O N N 186 DT "C3'" C N S 187 DT "O3'" O N N 188 DT "C2'" C N N 189 DT "C1'" C N R 190 DT N1 N N N 191 DT C2 C N N 192 DT O2 O N N 193 DT N3 N N N 194 DT C4 C N N 195 DT O4 O N N 196 DT C5 C N N 197 DT C7 C N N 198 DT C6 C N N 199 DT HOP3 H N N 200 DT HOP2 H N N 201 DT "H5'" H N N 202 DT "H5''" H N N 203 DT "H4'" H N N 204 DT "H3'" H N N 205 DT "HO3'" H N N 206 DT "H2'" H N N 207 DT "H2''" H N N 208 DT "H1'" H N N 209 DT H3 H N N 210 DT H71 H N N 211 DT H72 H N N 212 DT H73 H N N 213 DT H6 H N N 214 HOH O O N N 215 HOH H1 H N N 216 HOH H2 H N N 217 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DPY P O1P doub N N 113 DPY P O2P sing N N 114 DPY P "O5'" sing N N 115 DPY P O3P sing N N 116 DPY O2P HOP2 sing N N 117 DPY "O5'" "C5'" sing N N 118 DPY C1 C2 doub Y N 119 DPY C1 C6 sing Y N 120 DPY C1 "C1'" sing N N 121 DPY C2 C7 sing N N 122 DPY C2 N3 sing Y N 123 DPY C7 O71 doub N N 124 DPY C7 O72 sing N N 125 DPY O72 H72 sing N N 126 DPY N3 C4 doub Y N 127 DPY C4 C8 sing N N 128 DPY C4 C5 sing Y N 129 DPY C8 O81 doub N N 130 DPY C8 O82 sing N N 131 DPY O82 H82 sing N N 132 DPY C5 C6 doub Y N 133 DPY C5 H5 sing N N 134 DPY C6 H6 sing N N 135 DPY "C2'" "C1'" sing N N 136 DPY "C2'" "C3'" sing N N 137 DPY "C2'" "H2'1" sing N N 138 DPY "C2'" "H2'2" sing N N 139 DPY "C5'" "C4'" sing N N 140 DPY "C5'" "H5'1" sing N N 141 DPY "C5'" "H5'2" sing N N 142 DPY "C4'" "O4'" sing N N 143 DPY "C4'" "C3'" sing N N 144 DPY "C4'" "H4'" sing N N 145 DPY "O4'" "C1'" sing N N 146 DPY "C1'" "H1'" sing N N 147 DPY "C3'" "O3'" sing N N 148 DPY "C3'" "H3'" sing N N 149 DPY "O3'" H3T sing N N 150 DPY O3P HOP3 sing N N 151 DRP P O1P doub N N 152 DRP P O2P sing N N 153 DRP P "O5'" sing N N 154 DRP P O3P sing N N 155 DRP O2P HOP2 sing N N 156 DRP "O5'" "C5'" sing N N 157 DRP C1 C2 doub Y N 158 DRP C1 C6 sing Y N 159 DRP C1 "C1'" sing N N 160 DRP C2 N3 sing Y N 161 DRP C2 H2 sing N N 162 DRP N3 C4 doub Y N 163 DRP C4 C5 sing Y N 164 DRP C4 H4 sing N N 165 DRP C5 C6 doub Y N 166 DRP C5 H5 sing N N 167 DRP C6 H6 sing N N 168 DRP "C2'" "C1'" sing N N 169 DRP "C2'" "C3'" sing N N 170 DRP "C2'" "H2'1" sing N N 171 DRP "C2'" "H2'2" sing N N 172 DRP "C5'" "C4'" sing N N 173 DRP "C5'" "H5'1" sing N N 174 DRP "C5'" "H5'2" sing N N 175 DRP "C4'" "O4'" sing N N 176 DRP "C4'" "C3'" sing N N 177 DRP "C4'" "H4'" sing N N 178 DRP "O4'" "C1'" sing N N 179 DRP "C1'" "H1'" sing N N 180 DRP "C3'" "O3'" sing N N 181 DRP "C3'" "H3'" sing N N 182 DRP "O3'" H3T sing N N 183 DRP O3P HOP3 sing N N 184 DT OP3 P sing N N 185 DT OP3 HOP3 sing N N 186 DT P OP1 doub N N 187 DT P OP2 sing N N 188 DT P "O5'" sing N N 189 DT OP2 HOP2 sing N N 190 DT "O5'" "C5'" sing N N 191 DT "C5'" "C4'" sing N N 192 DT "C5'" "H5'" sing N N 193 DT "C5'" "H5''" sing N N 194 DT "C4'" "O4'" sing N N 195 DT "C4'" "C3'" sing N N 196 DT "C4'" "H4'" sing N N 197 DT "O4'" "C1'" sing N N 198 DT "C3'" "O3'" sing N N 199 DT "C3'" "C2'" sing N N 200 DT "C3'" "H3'" sing N N 201 DT "O3'" "HO3'" sing N N 202 DT "C2'" "C1'" sing N N 203 DT "C2'" "H2'" sing N N 204 DT "C2'" "H2''" sing N N 205 DT "C1'" N1 sing N N 206 DT "C1'" "H1'" sing N N 207 DT N1 C2 sing N N 208 DT N1 C6 sing N N 209 DT C2 O2 doub N N 210 DT C2 N3 sing N N 211 DT N3 C4 sing N N 212 DT N3 H3 sing N N 213 DT C4 O4 doub N N 214 DT C4 C5 sing N N 215 DT C5 C7 sing N N 216 DT C5 C6 doub N N 217 DT C7 H71 sing N N 218 DT C7 H72 sing N N 219 DT C7 H73 sing N N 220 DT C6 H6 sing N N 221 HOH O H1 sing N N 222 HOH O H2 sing N N 223 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1JES 'z-form double helix' 1JES 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -0.351 -0.156 0.243 2.911 6.071 1.048 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 0.296 -0.144 -0.022 -7.192 -5.958 0.667 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.323 -0.177 0.051 1.264 1.384 3.546 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 0.336 -0.224 0.231 -4.125 12.713 3.851 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 6 1_555 B DT 7 1_555 0.141 -0.192 0.036 -10.270 -7.246 0.426 5 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.083 -0.151 -0.140 7.717 -7.646 -3.061 6 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 -0.281 -0.163 0.083 4.545 12.318 3.001 7 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 0.267 -0.089 0.096 0.324 -0.703 2.143 8 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 -0.216 -0.110 0.003 8.286 -4.933 0.938 9 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 0.069 -0.248 0.148 -2.665 -2.656 3.722 10 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.294 5.573 3.822 -3.155 0.503 -6.602 -45.478 -14.238 2.932 -4.071 -25.520 -7.333 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.429 -1.236 3.268 0.441 -2.552 -53.462 1.532 0.504 3.206 2.835 0.490 -53.520 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 0.519 5.468 3.672 1.239 3.388 -8.854 -38.397 5.157 1.401 -20.844 7.623 -9.559 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.025 -2.407 3.163 1.919 5.791 -41.973 2.730 0.233 3.446 -8.033 2.662 -42.394 4 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 -0.475 5.506 3.624 -2.741 0.758 -9.151 -34.535 -8.535 2.891 -4.609 -16.657 -9.582 5 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.385 -1.234 3.319 -0.007 -1.467 -52.014 1.505 -0.440 3.285 1.673 -0.008 -52.033 6 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.020 5.333 3.744 1.222 -4.541 -1.827 13.771 19.776 6.161 66.417 17.871 -5.045 7 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'initial map fit with mononucleotides' # _atom_sites.entry_id 1JES _atom_sites.fract_transf_matrix[1][1] 0.039459 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007763 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029104 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032778 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CU N O P # loop_