HEADER TRANSCRIPTION/DNA 20-JUN-01 1JFI TITLE CRYSTAL STRUCTURE OF THE NC2-TBP-DNA TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP COMPND 3 *C)-3'; COMPND 4 CHAIN: D; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: 19 BASE-PAIR TATA-CONTAINING OLIGONUCLEOTIDE TOP COMPND 7 STRAND; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP* COMPND 10 A)-3'; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: 19 BASE-PAIR TATA-CONTAINING OLIGONUCLEOTIDE BOTTOM COMPND 14 STRAND; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: TRANSCRIPTION REGULATOR NC2 ALPHA CHAIN; COMPND 17 CHAIN: A; COMPND 18 FRAGMENT: RESIDUES 1-77; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: TRANSCRIPTION REGULATOR NC2 BETA CHAIN; COMPND 22 CHAIN: B; COMPND 23 SYNONYM: DR1 PROTEIN; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 5; COMPND 26 MOLECULE: TATA-BOX-BINDING PROTEIN (TBP); COMPND 27 CHAIN: C; COMPND 28 FRAGMENT: RESIDUES 359-539; COMPND 29 SYNONYM: TRANSCRIPTION INITIATION FACTOR TFIID; COMPND 30 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: NC2 ALPHA (DRAP1); SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET11D; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: NC2 BETA (DR1); SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 GENE: TBP; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 31 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 32 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 33 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 34 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS HISTONE, H2A/H2B, TBP, TATA-DNA, TRANSCRIPTION INITIATION, NC2, KEYWDS 2 NEGATIVE COFACTOR, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 4 NYSGXRC, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.KAMADA,F.SHU,H.CHEN,S.MALIK,G.STELZER,R.G.ROEDER,M.MEISTERERNST, AUTHOR 2 S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (NYSGXRC) REVDAT 5 16-AUG-23 1JFI 1 REMARK REVDAT 4 03-FEB-21 1JFI 1 AUTHOR JRNL SEQADV REVDAT 3 24-FEB-09 1JFI 1 VERSN REVDAT 2 25-JAN-05 1JFI 1 AUTHOR KEYWDS REMARK REVDAT 1 11-JUL-01 1JFI 0 JRNL AUTH K.KAMADA,F.SHU,H.CHEN,S.MALIK,G.STELZER,R.G.ROEDER, JRNL AUTH 2 M.MEISTERERNST,S.K.BURLEY JRNL TITL CRYSTAL STRUCTURE OF NEGATIVE COFACTOR 2 RECOGNIZING THE JRNL TITL 2 TBP-DNA TRANSCRIPTION COMPLEX. JRNL REF CELL(CAMBRIDGE,MASS.) V. 106 71 2001 JRNL REFN ISSN 0092-8674 JRNL PMID 11461703 JRNL DOI 10.1016/S0092-8674(01)00417-2 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 21084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1499 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2387 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 177 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3002 REMARK 3 NUCLEIC ACID ATOMS : 732 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.66000 REMARK 3 B22 (A**2) : 21.02000 REMARK 3 B33 (A**2) : -4.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.100 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 29.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98400 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31200 REMARK 200 R SYM FOR SHELL (I) : 0.31200 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CDW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CITRATE, POTASSIUM REMARK 280 CHLORIDE, MAGNESIUM CHLORIDE, DTT, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.53800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.53800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.34200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.53750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.34200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.53750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.53800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.34200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.53750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.53800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.34200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.53750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC D 619 REMARK 465 DG E 701 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 TYR A 8 REMARK 465 ASN A 9 REMARK 465 ASN A 61 REMARK 465 ALA A 62 REMARK 465 LYS A 63 REMARK 465 LEU A 76 REMARK 465 GLU A 77 REMARK 465 GLY A 78 REMARK 465 ASP A 79 REMARK 465 PRO A 80 REMARK 465 ALA A 81 REMARK 465 ALA A 82 REMARK 465 ASN A 83 REMARK 465 LYS A 84 REMARK 465 ALA A 85 REMARK 465 ARG A 86 REMARK 465 LYS A 87 REMARK 465 GLU A 88 REMARK 465 ALA A 89 REMARK 465 GLU A 90 REMARK 465 LEU A 91 REMARK 465 ALA A 92 REMARK 465 ALA A 93 REMARK 465 ALA A 94 REMARK 465 THR A 95 REMARK 465 ALA A 96 REMARK 465 GLU A 97 REMARK 465 GLN A 98 REMARK 465 GLY B 98 REMARK 465 PRO B 99 REMARK 465 HIS B 100 REMARK 465 MET B 101 REMARK 465 ALA B 102 REMARK 465 SER B 103 REMARK 465 SER B 104 REMARK 465 SER B 105 REMARK 465 GLY B 106 REMARK 465 ASN B 107 REMARK 465 ASP B 108 REMARK 465 MET B 244 REMARK 465 GLN B 245 REMARK 465 GLN B 246 REMARK 465 ALA B 247 REMARK 465 ALA B 248 REMARK 465 GLN B 249 REMARK 465 GLN B 250 REMARK 465 ALA B 251 REMARK 465 GLN B 252 REMARK 465 LEU B 253 REMARK 465 ALA B 254 REMARK 465 ALA B 255 REMARK 465 ALA B 256 REMARK 465 SER B 257 REMARK 465 ALA B 258 REMARK 465 SER B 259 REMARK 465 ALA B 260 REMARK 465 SER B 261 REMARK 465 ASN B 262 REMARK 465 GLN B 263 REMARK 465 ALA B 264 REMARK 465 GLY B 265 REMARK 465 SER B 266 REMARK 465 SER B 267 REMARK 465 GLN B 268 REMARK 465 ASP B 269 REMARK 465 GLU B 270 REMARK 465 GLU B 271 REMARK 465 ASP B 272 REMARK 465 ASP B 273 REMARK 465 ASP B 274 REMARK 465 ASP B 275 REMARK 465 ILE B 276 REMARK 465 GLY C 355 REMARK 465 THR C 539 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG E 702 P OP1 OP2 REMARK 470 TRP B 241 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 241 CZ3 CH2 REMARK 470 LEU B 242 CG CD1 CD2 REMARK 470 GLN B 243 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG C 386 NH2 ARG C 386 3755 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 102.60 -53.54 REMARK 500 GLN A 72 20.19 -70.55 REMARK 500 LEU B 126 72.42 -111.54 REMARK 500 ASN B 128 55.55 73.98 REMARK 500 SER B 161 23.15 -70.18 REMARK 500 GLU B 162 24.73 41.56 REMARK 500 ILE B 166 109.92 -55.42 REMARK 500 ILE B 184 -18.25 -47.31 REMARK 500 CYS C 376 133.82 -177.94 REMARK 500 ARG C 388 -81.84 -51.14 REMARK 500 ARG C 408 109.11 -59.22 REMARK 500 PRO C 447 61.20 -67.14 REMARK 500 PHE C 466 134.02 178.28 REMARK 500 PRO C 467 156.99 -49.85 REMARK 500 VAL C 506 -35.39 -38.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG D 604 0.10 SIDE CHAIN REMARK 500 DC D 605 0.08 SIDE CHAIN REMARK 500 DT D 606 0.10 SIDE CHAIN REMARK 500 DA D 612 0.06 SIDE CHAIN REMARK 500 DA E 712 0.06 SIDE CHAIN REMARK 500 DT E 713 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-P048A RELATED DB: TARGETDB DBREF 1JFI A 1 77 UNP Q14919 DRAP1_HUMAN 1 77 DBREF 1JFI B 101 276 UNP Q01658 TBAP_HUMAN 1 176 DBREF 1JFI C 359 539 UNP P20226 TBP_HUMAN 159 339 DBREF 1JFI D 601 619 PDB 1JFI 1JFI 601 619 DBREF 1JFI E 701 719 PDB 1JFI 1JFI 701 719 SEQADV 1JFI GLY A 78 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ASP A 79 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI PRO A 80 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ALA A 81 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ALA A 82 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ASN A 83 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI LYS A 84 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ALA A 85 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ARG A 86 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI LYS A 87 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI GLU A 88 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ALA A 89 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI GLU A 90 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI LEU A 91 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ALA A 92 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ALA A 93 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ALA A 94 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI THR A 95 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI ALA A 96 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI GLU A 97 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI GLN A 98 UNP Q14919 CLONING ARTIFACT SEQADV 1JFI GLY B 98 UNP Q01658 CLONING ARTIFACT SEQADV 1JFI PRO B 99 UNP Q01658 CLONING ARTIFACT SEQADV 1JFI HIS B 100 UNP Q01658 CLONING ARTIFACT SEQADV 1JFI GLY C 355 UNP P20226 CLONING ARTIFACT SEQADV 1JFI SER C 356 UNP P20226 CLONING ARTIFACT SEQADV 1JFI HIS C 357 UNP P20226 CLONING ARTIFACT SEQADV 1JFI MET C 358 UNP P20226 CLONING ARTIFACT SEQRES 1 D 19 DT DT DG DG DC DT DA DT DA DA DA DA DG SEQRES 2 D 19 DG DG DC DT DC DC SEQRES 1 E 19 DG DG DA DG DC DC DC DT DT DT DT DA DT SEQRES 2 E 19 DA DG DC DC DA DA SEQRES 1 A 98 MET PRO SER LYS LYS LYS LYS TYR ASN ALA ARG PHE PRO SEQRES 2 A 98 PRO ALA ARG ILE LYS LYS ILE MET GLN THR ASP GLU GLU SEQRES 3 A 98 ILE GLY LYS VAL ALA ALA ALA VAL PRO VAL ILE ILE SER SEQRES 4 A 98 ARG ALA LEU GLU LEU PHE LEU GLU SER LEU LEU LYS LYS SEQRES 5 A 98 ALA CYS GLN VAL THR GLN SER ARG ASN ALA LYS THR MET SEQRES 6 A 98 THR THR SER HIS LEU LYS GLN CYS ILE GLU LEU GLU GLY SEQRES 7 A 98 ASP PRO ALA ALA ASN LYS ALA ARG LYS GLU ALA GLU LEU SEQRES 8 A 98 ALA ALA ALA THR ALA GLU GLN SEQRES 1 B 179 GLY PRO HIS MET ALA SER SER SER GLY ASN ASP ASP ASP SEQRES 2 B 179 LEU THR ILE PRO ARG ALA ALA ILE ASN LYS MET ILE LYS SEQRES 3 B 179 GLU THR LEU PRO ASN VAL ARG VAL ALA ASN ASP ALA ARG SEQRES 4 B 179 GLU LEU VAL VAL ASN CYS CYS THR GLU PHE ILE HIS LEU SEQRES 5 B 179 ILE SER SER GLU ALA ASN GLU ILE CYS ASN LYS SER GLU SEQRES 6 B 179 LYS LYS THR ILE SER PRO GLU HIS VAL ILE GLN ALA LEU SEQRES 7 B 179 GLU SER LEU GLY PHE GLY SER TYR ILE SER GLU VAL LYS SEQRES 8 B 179 GLU VAL LEU GLN GLU CYS LYS THR VAL ALA LEU LYS ARG SEQRES 9 B 179 ARG LYS ALA SER SER ARG LEU GLU ASN LEU GLY ILE PRO SEQRES 10 B 179 GLU GLU GLU LEU LEU ARG GLN GLN GLN GLU LEU PHE ALA SEQRES 11 B 179 LYS ALA ARG GLN GLN GLN ALA GLU LEU ALA GLN GLN GLU SEQRES 12 B 179 TRP LEU GLN MET GLN GLN ALA ALA GLN GLN ALA GLN LEU SEQRES 13 B 179 ALA ALA ALA SER ALA SER ALA SER ASN GLN ALA GLY SER SEQRES 14 B 179 SER GLN ASP GLU GLU ASP ASP ASP ASP ILE SEQRES 1 C 185 GLY SER HIS MET SER GLY ILE VAL PRO GLN LEU GLN ASN SEQRES 2 C 185 ILE VAL SER THR VAL ASN LEU GLY CYS LYS LEU ASP LEU SEQRES 3 C 185 LYS THR ILE ALA LEU ARG ALA ARG ASN ALA GLU TYR ASN SEQRES 4 C 185 PRO LYS ARG PHE ALA ALA VAL ILE MET ARG ILE ARG GLU SEQRES 5 C 185 PRO ARG THR THR ALA LEU ILE PHE SER SER GLY LYS MET SEQRES 6 C 185 VAL CYS THR GLY ALA LYS SER GLU GLU GLN SER ARG LEU SEQRES 7 C 185 ALA ALA ARG LYS TYR ALA ARG VAL VAL GLN LYS LEU GLY SEQRES 8 C 185 PHE PRO ALA LYS PHE LEU ASP PHE LYS ILE GLN ASN MET SEQRES 9 C 185 VAL GLY SER CYS ASP VAL LYS PHE PRO ILE ARG LEU GLU SEQRES 10 C 185 GLY LEU VAL LEU THR HIS GLN GLN PHE SER SER TYR GLU SEQRES 11 C 185 PRO GLU LEU PHE PRO GLY LEU ILE TYR ARG MET ILE LYS SEQRES 12 C 185 PRO ARG ILE VAL LEU LEU ILE PHE VAL SER GLY LYS VAL SEQRES 13 C 185 VAL LEU THR GLY ALA LYS VAL ARG ALA GLU ILE TYR GLU SEQRES 14 C 185 ALA PHE GLU ASN ILE TYR PRO ILE LEU LYS GLY PHE ARG SEQRES 15 C 185 LYS THR THR FORMUL 6 HOH *9(H2 O) HELIX 1 1 PRO A 13 GLN A 22 1 10 HELIX 2 2 ALA A 32 GLN A 58 1 27 HELIX 3 3 THR A 66 GLN A 72 1 7 HELIX 4 4 PRO B 114 LEU B 126 1 13 HELIX 5 5 ALA B 132 SER B 161 1 30 HELIX 6 6 SER B 167 GLY B 179 1 13 HELIX 7 7 PHE B 180 SER B 182 5 3 HELIX 8 8 TYR B 183 GLU B 209 1 27 HELIX 9 9 PRO B 214 LEU B 242 1 29 HELIX 10 10 ASP C 379 ALA C 387 1 9 HELIX 11 11 SER C 426 LEU C 444 1 19 HELIX 12 12 ARG C 469 HIS C 477 1 9 HELIX 13 13 VAL C 517 GLY C 534 1 18 SHEET 1 A10 ALA C 390 ASN C 393 0 SHEET 2 A10 PHE C 397 ILE C 404 -1 N PHE C 397 O ASN C 393 SHEET 3 A10 THR C 410 ILE C 413 -1 N THR C 410 O ILE C 404 SHEET 4 A10 LYS C 418 THR C 422 -1 O VAL C 420 N LEU C 412 SHEET 5 A10 GLN C 364 ASN C 373 -1 N SER C 370 O CYS C 421 SHEET 6 A10 LEU C 451 ASP C 463 -1 O LEU C 451 N ASN C 373 SHEET 7 A10 LYS C 509 ALA C 515 -1 N VAL C 511 O CYS C 462 SHEET 8 A10 VAL C 501 ILE C 504 -1 N VAL C 501 O THR C 513 SHEET 9 A10 LEU C 491 ARG C 494 -1 N LEU C 491 O ILE C 504 SHEET 10 A10 SER C 482 SER C 482 -1 O SER C 482 N ILE C 492 CISPEP 1 GLU C 406 PRO C 407 0 -0.39 CISPEP 2 LYS C 497 PRO C 498 0 0.24 CRYST1 76.684 119.075 155.076 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006448 0.00000