HEADER IMMUNE SYSTEM 21-JUN-01 1JFM TITLE CRYSTAL STRUCTURE OF MURINE NK CELL LIGAND RAE-1 BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID EARLY TRANSCRIPT BETA; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: RAE-1 BETA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RAE-1BETA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS MURINE NK CELL LIGAND, RAE-1 BETA, NKG2D, MHC-I PLATFORM, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.LI,R.K.STRONG REVDAT 4 20-NOV-24 1JFM 1 REMARK REVDAT 3 24-FEB-09 1JFM 1 VERSN REVDAT 2 01-APR-03 1JFM 1 JRNL REVDAT 1 20-FEB-02 1JFM 0 JRNL AUTH P.LI,G.MCDERMOTT,R.K.STRONG JRNL TITL CRYSTAL STRUCTURES OF RAE-1BETA AND ITS COMPLEX WITH THE JRNL TITL 2 ACTIVATING IMMUNORECEPTOR NKG2D. JRNL REF IMMUNITY V. 16 77 2002 JRNL REFN ISSN 1074-7613 JRNL PMID 11825567 JRNL DOI 10.1016/S1074-7613(02)00258-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.CERWENKA,A.B.BAKKER,T.MCCLANHAN,J.WAGNER,J.WU, REMARK 1 AUTH 2 J.H.PHILLIPS,L.L.LANIER REMARK 1 TITL RETINOIC ACID EARLY INDUCIBLE GENES DEFINE A LIGAND 2 REMARK 1 TITL 2 ACTIVATING NKG2D RECEPTOR IN MOUSE REMARK 1 REF IMMUNITY V. 12 721 2000 REMARK 1 REFN ISSN 1074-7613 REMARK 1 DOI 10.1016/S1074-7613(00)80222-8 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.DIEFENBACH,A.M.JAMIESON,S.D.LIU,N.SHASTRI,D.H.RAULET REMARK 1 TITL LIGANDS FOR THE MURINE NKG2D RECEPTOR:EXPRESSION BY TUMOR REMARK 1 TITL 2 CELLS AND MACROPHAGES REMARK 1 REF NAT.IMMUNOL. V. 1 119 2000 REMARK 1 REFN ISSN 1529-2908 REMARK 1 DOI 10.1038/77793 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 283690.090 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 37491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2839 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5328 REMARK 3 BIN R VALUE (WORKING SET) : 0.3980 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 453 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7025 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM SIGMAA (A) : 0.65 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.68 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 51.82 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.37 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.07900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : 0.46000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: MIR WITH 5 FOLD NCS AVERAGING REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG400 + 375MM (NH4)2SO4, PH 4.50, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.20750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 69.20750 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 168.77650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.20750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.38825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.20750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 253.16475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.20750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 253.16475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.20750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.38825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 69.20750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 69.20750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 168.77650 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.20750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.20750 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 168.77650 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.20750 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 253.16475 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.20750 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 84.38825 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.20750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 84.38825 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.20750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 253.16475 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.20750 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.20750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 168.77650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR C 15 N ALA C 17 1.90 REMARK 500 O SER E 101 N GLY E 103 2.14 REMARK 500 OD2 ASP D 13 O TYR D 89 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 173 OE1 GLU A 173 10665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 102 N - CA - C ANGL. DEV. = -26.2 DEGREES REMARK 500 LYS B 85 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 PRO B 90 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO C 14 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 THR C 15 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU C 34 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO C 48 C - N - CA ANGL. DEV. = -11.5 DEGREES REMARK 500 PRO D 14 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 PRO D 16 C - N - CA ANGL. DEV. = 19.3 DEGREES REMARK 500 PRO D 16 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 LEU D 34 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ASN D 40 N - CA - C ANGL. DEV. = 33.9 DEGREES REMARK 500 THR D 83 N - CA - C ANGL. DEV. = 21.7 DEGREES REMARK 500 LYS D 85 N - CA - C ANGL. DEV. = 23.6 DEGREES REMARK 500 THR D 86 N - CA - C ANGL. DEV. = 22.1 DEGREES REMARK 500 GLY D 88 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 SER D 171 N - CA - C ANGL. DEV. = 33.8 DEGREES REMARK 500 PRO E 14 C - N - CA ANGL. DEV. = 18.1 DEGREES REMARK 500 PRO E 14 C - N - CD ANGL. DEV. = -18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 -156.01 163.63 REMARK 500 LYS A 12 -166.94 -126.71 REMARK 500 PRO A 14 -168.27 -60.13 REMARK 500 THR A 15 102.76 158.76 REMARK 500 PRO A 16 0.42 -45.03 REMARK 500 ASP A 18 73.97 -155.82 REMARK 500 LEU A 20 111.99 -28.05 REMARK 500 ILE A 33 -70.07 -132.52 REMARK 500 SER A 37 171.81 178.57 REMARK 500 ILE A 39 -118.03 -72.30 REMARK 500 THR A 42 -88.18 -176.59 REMARK 500 MET A 43 101.35 92.86 REMARK 500 ASP A 47 -49.39 163.71 REMARK 500 PRO A 48 -117.00 -70.80 REMARK 500 GLU A 50 -78.44 -124.80 REMARK 500 THR A 51 47.06 38.76 REMARK 500 ALA A 52 -45.96 15.83 REMARK 500 VAL A 81 -140.18 -116.08 REMARK 500 ASN A 87 49.61 174.32 REMARK 500 TYR A 89 -31.55 162.21 REMARK 500 PRO A 90 163.94 -48.91 REMARK 500 THR A 105 118.31 2.63 REMARK 500 SER A 115 13.29 51.79 REMARK 500 GLU A 159 -71.50 -54.64 REMARK 500 ASP B 18 57.49 175.47 REMARK 500 PRO B 19 19.73 -63.32 REMARK 500 SER B 37 160.56 169.87 REMARK 500 ILE B 39 -25.08 95.64 REMARK 500 MET B 43 155.86 154.12 REMARK 500 PRO B 48 -130.78 -62.78 REMARK 500 GLU B 50 -97.24 -103.81 REMARK 500 THR B 51 2.11 -63.38 REMARK 500 THR B 62 -56.84 -25.00 REMARK 500 THR B 83 69.50 66.71 REMARK 500 ASN B 87 -17.20 -46.54 REMARK 500 GLN B 102 39.19 33.30 REMARK 500 GLU B 125 -74.70 -50.73 REMARK 500 ASN B 133 -169.38 -109.34 REMARK 500 LYS C 12 -155.07 -122.43 REMARK 500 THR C 15 150.09 153.82 REMARK 500 PRO C 16 10.87 -16.76 REMARK 500 ASP C 18 102.41 74.58 REMARK 500 PRO C 19 61.86 -63.50 REMARK 500 LEU C 34 140.87 179.38 REMARK 500 MET C 43 83.10 21.24 REMARK 500 THR C 44 -68.57 -10.26 REMARK 500 SER C 45 -155.37 165.49 REMARK 500 ASP C 47 20.29 152.01 REMARK 500 THR C 51 -175.08 45.08 REMARK 500 VAL C 81 -157.67 -138.56 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1JFM A 1 174 UNP O08603 RAE1B_MOUSE 31 204 DBREF 1JFM B 1 174 UNP O08603 RAE1B_MOUSE 31 204 DBREF 1JFM C 1 174 UNP O08603 RAE1B_MOUSE 31 204 DBREF 1JFM D 1 174 UNP O08603 RAE1B_MOUSE 31 204 DBREF 1JFM E 1 174 UNP O08603 RAE1B_MOUSE 31 204 SEQRES 1 A 174 ASP ALA HIS SER LEU ARG CYS ASN LEU THR ILE LYS ASP SEQRES 2 A 174 PRO THR PRO ALA ASP PRO LEU TRP TYR GLU ALA LYS CYS SEQRES 3 A 174 PHE VAL GLY GLU ILE LEU ILE LEU HIS LEU SER ASN ILE SEQRES 4 A 174 ASN LYS THR MET THR SER GLY ASP PRO GLY GLU THR ALA SEQRES 5 A 174 ASN ALA THR GLU VAL LYS LYS CYS LEU THR GLN PRO LEU SEQRES 6 A 174 LYS ASN LEU CYS GLN LYS LEU ARG ASN LYS VAL SER ASN SEQRES 7 A 174 THR LYS VAL ASP THR HIS LYS THR ASN GLY TYR PRO HIS SEQRES 8 A 174 LEU GLN VAL THR MET ILE TYR PRO GLN SER GLN GLY ARG SEQRES 9 A 174 THR PRO SER ALA THR TRP GLU PHE ASN ILE SER ASP SER SEQRES 10 A 174 TYR PHE PHE THR PHE TYR THR GLU ASN MET SER TRP ARG SEQRES 11 A 174 SER ALA ASN ASP GLU SER GLY VAL ILE MET ASN LYS TRP SEQRES 12 A 174 LYS ASP ASP GLY GLU PHE VAL LYS GLN LEU LYS PHE LEU SEQRES 13 A 174 ILE HIS GLU CYS SER GLN LYS MET ASP GLU PHE LEU LYS SEQRES 14 A 174 GLN SER LYS GLU LYS SEQRES 1 B 174 ASP ALA HIS SER LEU ARG CYS ASN LEU THR ILE LYS ASP SEQRES 2 B 174 PRO THR PRO ALA ASP PRO LEU TRP TYR GLU ALA LYS CYS SEQRES 3 B 174 PHE VAL GLY GLU ILE LEU ILE LEU HIS LEU SER ASN ILE SEQRES 4 B 174 ASN LYS THR MET THR SER GLY ASP PRO GLY GLU THR ALA SEQRES 5 B 174 ASN ALA THR GLU VAL LYS LYS CYS LEU THR GLN PRO LEU SEQRES 6 B 174 LYS ASN LEU CYS GLN LYS LEU ARG ASN LYS VAL SER ASN SEQRES 7 B 174 THR LYS VAL ASP THR HIS LYS THR ASN GLY TYR PRO HIS SEQRES 8 B 174 LEU GLN VAL THR MET ILE TYR PRO GLN SER GLN GLY ARG SEQRES 9 B 174 THR PRO SER ALA THR TRP GLU PHE ASN ILE SER ASP SER SEQRES 10 B 174 TYR PHE PHE THR PHE TYR THR GLU ASN MET SER TRP ARG SEQRES 11 B 174 SER ALA ASN ASP GLU SER GLY VAL ILE MET ASN LYS TRP SEQRES 12 B 174 LYS ASP ASP GLY GLU PHE VAL LYS GLN LEU LYS PHE LEU SEQRES 13 B 174 ILE HIS GLU CYS SER GLN LYS MET ASP GLU PHE LEU LYS SEQRES 14 B 174 GLN SER LYS GLU LYS SEQRES 1 C 174 ASP ALA HIS SER LEU ARG CYS ASN LEU THR ILE LYS ASP SEQRES 2 C 174 PRO THR PRO ALA ASP PRO LEU TRP TYR GLU ALA LYS CYS SEQRES 3 C 174 PHE VAL GLY GLU ILE LEU ILE LEU HIS LEU SER ASN ILE SEQRES 4 C 174 ASN LYS THR MET THR SER GLY ASP PRO GLY GLU THR ALA SEQRES 5 C 174 ASN ALA THR GLU VAL LYS LYS CYS LEU THR GLN PRO LEU SEQRES 6 C 174 LYS ASN LEU CYS GLN LYS LEU ARG ASN LYS VAL SER ASN SEQRES 7 C 174 THR LYS VAL ASP THR HIS LYS THR ASN GLY TYR PRO HIS SEQRES 8 C 174 LEU GLN VAL THR MET ILE TYR PRO GLN SER GLN GLY ARG SEQRES 9 C 174 THR PRO SER ALA THR TRP GLU PHE ASN ILE SER ASP SER SEQRES 10 C 174 TYR PHE PHE THR PHE TYR THR GLU ASN MET SER TRP ARG SEQRES 11 C 174 SER ALA ASN ASP GLU SER GLY VAL ILE MET ASN LYS TRP SEQRES 12 C 174 LYS ASP ASP GLY GLU PHE VAL LYS GLN LEU LYS PHE LEU SEQRES 13 C 174 ILE HIS GLU CYS SER GLN LYS MET ASP GLU PHE LEU LYS SEQRES 14 C 174 GLN SER LYS GLU LYS SEQRES 1 D 174 ASP ALA HIS SER LEU ARG CYS ASN LEU THR ILE LYS ASP SEQRES 2 D 174 PRO THR PRO ALA ASP PRO LEU TRP TYR GLU ALA LYS CYS SEQRES 3 D 174 PHE VAL GLY GLU ILE LEU ILE LEU HIS LEU SER ASN ILE SEQRES 4 D 174 ASN LYS THR MET THR SER GLY ASP PRO GLY GLU THR ALA SEQRES 5 D 174 ASN ALA THR GLU VAL LYS LYS CYS LEU THR GLN PRO LEU SEQRES 6 D 174 LYS ASN LEU CYS GLN LYS LEU ARG ASN LYS VAL SER ASN SEQRES 7 D 174 THR LYS VAL ASP THR HIS LYS THR ASN GLY TYR PRO HIS SEQRES 8 D 174 LEU GLN VAL THR MET ILE TYR PRO GLN SER GLN GLY ARG SEQRES 9 D 174 THR PRO SER ALA THR TRP GLU PHE ASN ILE SER ASP SER SEQRES 10 D 174 TYR PHE PHE THR PHE TYR THR GLU ASN MET SER TRP ARG SEQRES 11 D 174 SER ALA ASN ASP GLU SER GLY VAL ILE MET ASN LYS TRP SEQRES 12 D 174 LYS ASP ASP GLY GLU PHE VAL LYS GLN LEU LYS PHE LEU SEQRES 13 D 174 ILE HIS GLU CYS SER GLN LYS MET ASP GLU PHE LEU LYS SEQRES 14 D 174 GLN SER LYS GLU LYS SEQRES 1 E 174 ASP ALA HIS SER LEU ARG CYS ASN LEU THR ILE LYS ASP SEQRES 2 E 174 PRO THR PRO ALA ASP PRO LEU TRP TYR GLU ALA LYS CYS SEQRES 3 E 174 PHE VAL GLY GLU ILE LEU ILE LEU HIS LEU SER ASN ILE SEQRES 4 E 174 ASN LYS THR MET THR SER GLY ASP PRO GLY GLU THR ALA SEQRES 5 E 174 ASN ALA THR GLU VAL LYS LYS CYS LEU THR GLN PRO LEU SEQRES 6 E 174 LYS ASN LEU CYS GLN LYS LEU ARG ASN LYS VAL SER ASN SEQRES 7 E 174 THR LYS VAL ASP THR HIS LYS THR ASN GLY TYR PRO HIS SEQRES 8 E 174 LEU GLN VAL THR MET ILE TYR PRO GLN SER GLN GLY ARG SEQRES 9 E 174 THR PRO SER ALA THR TRP GLU PHE ASN ILE SER ASP SER SEQRES 10 E 174 TYR PHE PHE THR PHE TYR THR GLU ASN MET SER TRP ARG SEQRES 11 E 174 SER ALA ASN ASP GLU SER GLY VAL ILE MET ASN LYS TRP SEQRES 12 E 174 LYS ASP ASP GLY GLU PHE VAL LYS GLN LEU LYS PHE LEU SEQRES 13 E 174 ILE HIS GLU CYS SER GLN LYS MET ASP GLU PHE LEU LYS SEQRES 14 E 174 GLN SER LYS GLU LYS FORMUL 6 HOH *42(H2 O) HELIX 1 1 ALA A 52 ASN A 78 1 27 HELIX 2 2 ASN A 133 LYS A 144 1 12 HELIX 3 3 ASP A 146 SER A 171 1 26 HELIX 4 4 GLU B 50 ASN B 78 1 29 HELIX 5 5 ASN B 133 LYS B 144 1 12 HELIX 6 6 ASP B 146 GLN B 170 1 25 HELIX 7 7 ALA C 52 VAL C 76 1 25 HELIX 8 8 ASP C 134 ASP C 145 1 12 HELIX 9 9 ASP C 146 LYS C 169 1 24 HELIX 10 10 GLU D 50 THR D 79 1 30 HELIX 11 11 ASN D 133 ASP D 145 1 13 HELIX 12 12 ASP D 146 LEU D 168 1 23 HELIX 13 13 ASN E 53 VAL E 76 1 24 HELIX 14 14 ASN E 133 ASP E 145 1 13 HELIX 15 15 ASP E 146 GLN E 170 1 25 SHEET 1 A 7 ILE A 31 SER A 37 0 SHEET 2 A 7 TYR A 22 VAL A 28 -1 N ALA A 24 O LEU A 36 SHEET 3 A 7 SER A 4 ILE A 11 -1 N ARG A 6 O PHE A 27 SHEET 4 A 7 LEU A 92 PRO A 99 -1 N LEU A 92 O ILE A 11 SHEET 5 A 7 THR A 109 ILE A 114 -1 O THR A 109 N ILE A 97 SHEET 6 A 7 TYR A 118 TYR A 123 -1 O TYR A 118 N ILE A 114 SHEET 7 A 7 SER A 128 SER A 131 -1 O SER A 128 N TYR A 123 SHEET 1 B 8 ASN B 40 THR B 42 0 SHEET 2 B 8 ILE B 31 SER B 37 -1 O HIS B 35 N THR B 42 SHEET 3 B 8 GLU B 23 VAL B 28 -1 O ALA B 24 N LEU B 36 SHEET 4 B 8 LEU B 5 ILE B 11 -1 N ARG B 6 O PHE B 27 SHEET 5 B 8 LEU B 92 TYR B 98 -1 N LEU B 92 O ILE B 11 SHEET 6 B 8 THR B 109 ILE B 114 -1 O THR B 109 N ILE B 97 SHEET 7 B 8 TYR B 118 TYR B 123 -1 N TYR B 118 O ILE B 114 SHEET 8 B 8 SER B 128 SER B 131 -1 O SER B 128 N TYR B 123 SHEET 1 C 7 ILE C 31 SER C 37 0 SHEET 2 C 7 GLU C 23 VAL C 28 -1 O ALA C 24 N LEU C 36 SHEET 3 C 7 SER C 4 ILE C 11 -1 N ARG C 6 O PHE C 27 SHEET 4 C 7 LEU C 92 PRO C 99 -1 O LEU C 92 N ILE C 11 SHEET 5 C 7 THR C 109 ILE C 114 -1 O THR C 109 N ILE C 97 SHEET 6 C 7 TYR C 118 TYR C 123 -1 O TYR C 118 N ILE C 114 SHEET 7 C 7 SER C 128 SER C 131 -1 O SER C 128 N TYR C 123 SHEET 1 D 7 LEU D 32 LEU D 36 0 SHEET 2 D 7 TYR D 22 PHE D 27 -1 N ALA D 24 O LEU D 36 SHEET 3 D 7 SER D 4 ILE D 11 -1 N ARG D 6 O PHE D 27 SHEET 4 D 7 LEU D 92 PRO D 99 -1 O LEU D 92 N ILE D 11 SHEET 5 D 7 THR D 109 ILE D 114 -1 O THR D 109 N ILE D 97 SHEET 6 D 7 TYR D 118 TYR D 123 -1 O TYR D 118 N ILE D 114 SHEET 7 D 7 SER D 128 SER D 131 -1 O SER D 128 N TYR D 123 SHEET 1 E 7 ILE E 31 SER E 37 0 SHEET 2 E 7 GLU E 23 VAL E 28 -1 N ALA E 24 O LEU E 36 SHEET 3 E 7 LEU E 5 ILE E 11 -1 O ARG E 6 N PHE E 27 SHEET 4 E 7 LEU E 92 TYR E 98 -1 N LEU E 92 O ILE E 11 SHEET 5 E 7 THR E 109 ILE E 114 -1 O THR E 109 N ILE E 97 SHEET 6 E 7 TYR E 118 TYR E 123 -1 O TYR E 118 N ILE E 114 SHEET 7 E 7 SER E 128 SER E 131 -1 O SER E 128 N TYR E 123 SSBOND 1 CYS A 7 CYS A 26 1555 1555 2.04 SSBOND 2 CYS A 60 CYS A 160 1555 1555 2.03 SSBOND 3 CYS B 7 CYS B 26 1555 1555 2.04 SSBOND 4 CYS B 60 CYS B 160 1555 1555 2.05 SSBOND 5 CYS C 7 CYS C 26 1555 1555 2.03 SSBOND 6 CYS C 60 CYS C 160 1555 1555 2.04 SSBOND 7 CYS D 7 CYS D 26 1555 1555 2.04 SSBOND 8 CYS D 60 CYS D 160 1555 1555 2.03 SSBOND 9 CYS E 7 CYS E 26 1555 1555 2.03 SSBOND 10 CYS E 60 CYS E 160 1555 1555 2.04 CRYST1 138.415 138.415 337.553 90.00 90.00 90.00 I 41 2 2 80 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007225 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002962 0.00000