HEADER DNA 26-JUN-01 1JGR TITLE CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA DODECAMER CGCGAATTCGCG WITH TITLE 2 THALLIUM IONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS DOUBLE HELIX, DEOXYRIBONUCLEIC ACID, THALLIUM, DNA EXPDTA X-RAY DIFFRACTION AUTHOR S.B.HOWERTON,C.C.SINES,D.VANDERVEER,L.D.WILLIAMS REVDAT 3 16-AUG-23 1JGR 1 REMARK LINK REVDAT 2 24-FEB-09 1JGR 1 VERSN REVDAT 1 05-SEP-01 1JGR 0 JRNL AUTH S.B.HOWERTON,C.C.SINES,D.VANDERVEER,L.D.WILLIAMS JRNL TITL LOCATING MONOVALENT CATIONS IN THE GROOVES OF B-DNA. JRNL REF BIOCHEMISTRY V. 40 10023 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11513580 JRNL DOI 10.1021/BI010391+ REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : R FREE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.173 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.163 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2100 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 20997 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 486 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 ANGLE DISTANCES (A) : 0.030 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.000 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.030 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.004 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : PARKINSON ET AL. REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-00; 04-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 110; 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : NSLS; ROTATING ANODE REMARK 200 BEAMLINE : X26C; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000; 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE; NULL REMARK 200 OPTICS : GRAPHITE MONOCHROMATOR; OSMIC REMARK 200 BLUE CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; RIGAKU RAXIS REMARK 200 IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21760 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1FQN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DNA, THALLIUM ACETATE, MAGNESIUM REMARK 280 ACETATE, MPD, SPERMINE ACETATE, PH 6.4, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 12.97200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.10100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.37200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.10100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 12.97200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.37200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A1001 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG A1002 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 DG A1004 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES REMARK 500 DA A1006 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DT A1008 C3' - O3' - P ANGL. DEV. = 9.4 DEGREES REMARK 500 DC A1009 N3 - C4 - C5 ANGL. DEV. = -2.9 DEGREES REMARK 500 DC A1009 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC A1011 C6 - N1 - C2 ANGL. DEV. = -2.4 DEGREES REMARK 500 DC A1011 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC B2003 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG B2004 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG B2004 C3' - O3' - P ANGL. DEV. = 10.0 DEGREES REMARK 500 DA B2006 C2 - N3 - C4 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT B2007 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC B2009 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC A1003 0.06 SIDE CHAIN REMARK 500 DC A1009 0.09 SIDE CHAIN REMARK 500 DC A1011 0.09 SIDE CHAIN REMARK 500 DC B2003 0.08 SIDE CHAIN REMARK 500 DA B2005 0.07 SIDE CHAIN REMARK 500 DT B2008 0.07 SIDE CHAIN REMARK 500 DC B2009 0.07 SIDE CHAIN REMARK 500 DC B2011 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A2111 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A1001 N1 REMARK 620 2 DC A1001 O4' 43.0 REMARK 620 3 HOH A3013 O 120.2 106.3 REMARK 620 4 HOH A3079 O 96.0 136.2 78.9 REMARK 620 5 DG B2002 O3' 91.3 82.5 142.7 119.9 REMARK 620 6 DC B2003 OP1 131.7 127.0 108.0 89.6 46.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A2108 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A1002 N7 REMARK 620 2 DG A1002 O6 69.4 REMARK 620 3 HOH A3137 O 119.2 145.9 REMARK 620 4 HOH A3139 O 66.3 135.6 64.7 REMARK 620 5 DG B2010 O6 87.4 65.5 142.3 109.7 REMARK 620 6 TL B2107 TL 134.2 70.7 106.4 146.0 55.8 REMARK 620 7 HOH B3135 O 112.0 116.6 91.7 79.0 51.7 68.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL B2107 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A1002 O6 REMARK 620 2 HOH A3011 O 99.6 REMARK 620 3 HOH A3139 O 90.4 108.4 REMARK 620 4 DG B2010 O6 76.3 158.6 92.7 REMARK 620 5 DG B2010 N7 98.6 103.5 144.7 57.3 REMARK 620 6 HOH B3135 O 123.7 133.3 59.4 60.8 87.8 REMARK 620 7 HOH B3140 O 163.6 71.2 80.1 117.2 96.8 62.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL B2112 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A1003 OP1 REMARK 620 2 DC B2001 O4' 111.0 REMARK 620 3 HOH B3084 O 133.8 83.0 REMARK 620 4 HOH B3124 O 108.7 134.7 85.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A2103 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A1004 N7 REMARK 620 2 DG A1004 O6 69.9 REMARK 620 3 HOH A3047 O 79.4 110.1 REMARK 620 4 HOH A3122 O 133.6 70.2 137.2 REMARK 620 5 HOH A3123 O 117.6 153.6 96.3 90.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A2105 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A1004 N2 REMARK 620 2 DG A1004 N3 42.2 REMARK 620 3 DA A1005 O4' 95.1 92.4 REMARK 620 4 DG A1012 O3' 86.3 103.5 157.3 REMARK 620 5 HOH A3120 O 169.1 148.6 86.2 88.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL B2109 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A1004 N2 REMARK 620 2 DC B2009 O2 52.3 REMARK 620 3 DG B2010 O4' 134.5 88.6 REMARK 620 4 DG B2010 N3 75.6 79.8 75.1 REMARK 620 5 HOH B3003 O 90.3 52.6 79.9 126.3 REMARK 620 6 HOH B3103 O 96.2 142.3 106.5 71.5 162.1 REMARK 620 7 HOH B3131 O 134.1 169.4 88.5 109.4 116.7 48.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A2104 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A1005 N3 REMARK 620 2 DA A1006 O4' 75.2 REMARK 620 3 DC B2009 O2 84.8 151.7 REMARK 620 4 HOH B3003 O 122.5 160.5 46.8 REMARK 620 5 HOH B3040 O 120.5 71.1 103.6 102.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL B2106 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A1007 O2 REMARK 620 2 HOH A3015 O 110.6 REMARK 620 3 DT B2007 O2 88.1 99.1 REMARK 620 4 DT B2008 O4' 146.0 97.0 67.7 REMARK 620 5 HOH B3024 O 97.7 130.3 122.5 77.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A2110 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A1010 N7 REMARK 620 2 DG A1010 O6 72.9 REMARK 620 3 TL A2113 TL 92.1 69.7 REMARK 620 4 HOH A3115 O 143.8 75.0 92.2 REMARK 620 5 HOH A3116 O 84.8 154.5 124.6 121.1 REMARK 620 6 HOH A3130 O 94.6 143.3 76.6 121.3 48.8 REMARK 620 7 TL B2102 TL 104.4 58.0 22.2 71.3 142.7 94.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A2113 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A1010 O6 REMARK 620 2 HOH A3115 O 52.7 REMARK 620 3 DG B2002 O6 70.4 118.9 REMARK 620 4 TL B2102 TL 76.8 77.5 69.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL B2102 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A1010 O6 REMARK 620 2 HOH A3115 O 52.9 REMARK 620 3 DG B2002 N7 99.5 125.3 REMARK 620 4 DG B2002 O6 72.1 124.3 67.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2013 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TL A2108 TL REMARK 620 2 HOH A3136 O 32.4 REMARK 620 3 HOH A3137 O 100.1 91.5 REMARK 620 4 HOH A3138 O 148.7 176.0 91.8 REMARK 620 5 HOH A3139 O 59.4 90.2 89.2 92.2 REMARK 620 6 TL B2107 TL 36.4 22.4 113.6 153.9 94.2 REMARK 620 7 HOH B3135 O 79.8 87.5 178.2 89.2 92.2 65.3 REMARK 620 8 HOH B3140 O 119.2 88.0 88.4 89.8 176.9 85.0 90.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL B2101 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A3026 O REMARK 620 2 DG B2004 N7 135.8 REMARK 620 3 DG B2004 O6 89.6 65.1 REMARK 620 4 HOH B3046 O 80.7 69.6 99.7 REMARK 620 5 HOH B3081 O 114.8 75.5 139.8 57.2 REMARK 620 6 HOH B3082 O 43.5 135.8 70.8 121.8 148.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL B 2101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL B 2102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 2103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 2104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 2105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL B 2106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL B 2107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 2108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL B 2109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 2110 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 2111 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL B 2112 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 2113 DBREF 1JGR A 1001 1012 PDB 1JGR 1JGR 1001 1012 DBREF 1JGR B 2001 2012 PDB 1JGR 1JGR 2001 2012 SEQRES 1 A 12 DC DG DC DG DA DA DT DT DC DG DC DG SEQRES 1 B 12 DC DG DC DG DA DA DT DT DC DG DC DG HET MG A2013 1 HET TL A2103 1 HET TL A2104 1 HET TL A2105 1 HET TL A2108 1 HET TL A2110 1 HET TL A2111 1 HET TL A2113 1 HET TL B2101 1 HET TL B2102 1 HET TL B2106 1 HET TL B2107 1 HET TL B2109 1 HET TL B2112 1 HETNAM MG MAGNESIUM ION HETNAM TL THALLIUM (I) ION FORMUL 3 MG MG 2+ FORMUL 4 TL 13(TL 1+) FORMUL 17 HOH *140(H2 O) LINK N1 DC A1001 TL TL A2111 1555 1555 3.42 LINK O4' DC A1001 TL TL A2111 1555 1555 2.84 LINK N7 DG A1002 TL TL A2108 1555 1555 2.93 LINK O6 DG A1002 TL TL A2108 1555 1555 2.47 LINK O6 DG A1002 TL TL B2107 1555 1555 2.43 LINK OP1 DC A1003 TL TL B2112 2664 1555 2.42 LINK N7 DG A1004 TL TL A2103 1555 1555 2.27 LINK O6 DG A1004 TL TL A2103 1555 1555 2.93 LINK N2 DG A1004 TL TL A2105 1555 1555 3.48 LINK N3 DG A1004 TL TL A2105 1555 1555 2.65 LINK N2 DG A1004 TL TL B2109 1555 1555 3.18 LINK N3 DA A1005 TL TL A2104 1555 1555 2.74 LINK O4' DA A1005 TL TL A2105 1555 1555 3.01 LINK O4' DA A1006 TL TL A2104 1555 1555 3.11 LINK O2 DT A1007 TL TL B2106 1555 1555 2.67 LINK N7 DG A1010 TL TL A2110 1555 1555 2.57 LINK O6 DG A1010 TL TL A2110 1555 1555 2.66 LINK O6 DG A1010 TL TL A2113 1555 1555 3.06 LINK O6 DG A1010 TL TL B2102 1555 1555 3.06 LINK O3' DG A1012 TL TL A2105 2665 1555 3.01 LINK MG MG A2013 TL TL A2108 1555 1555 2.04 LINK MG MG A2013 O HOH A3136 1555 1555 2.11 LINK MG MG A2013 O HOH A3137 1555 1555 2.10 LINK MG MG A2013 O HOH A3138 1555 1555 2.11 LINK MG MG A2013 O HOH A3139 1555 1555 2.11 LINK MG MG A2013 TL TL B2107 1555 1555 2.52 LINK MG MG A2013 O HOH B3135 1555 1555 2.10 LINK MG MG A2013 O HOH B3140 1555 1555 2.11 LINK TL TL A2103 O HOH A3047 1555 1555 3.21 LINK TL TL A2103 O HOH A3122 1555 1555 1.68 LINK TL TL A2103 O HOH A3123 1555 1555 1.56 LINK TL TL A2104 O2 DC B2009 1555 1555 3.44 LINK TL TL A2104 O HOH B3003 1555 1555 2.83 LINK TL TL A2104 O HOH B3040 1555 1555 3.13 LINK TL TL A2105 O HOH A3120 1555 1555 2.63 LINK TL TL A2108 O HOH A3137 1555 1555 3.17 LINK TL TL A2108 O HOH A3139 1555 1555 2.06 LINK TL TL A2108 O6 DG B2010 1555 1555 3.42 LINK TL TL A2108 TL TL B2107 1555 1555 1.50 LINK TL TL A2108 O HOH B3135 1555 1555 2.65 LINK TL TL A2110 TL TL A2113 1555 1555 2.69 LINK TL TL A2110 O HOH A3115 1555 1555 2.05 LINK TL TL A2110 O HOH A3116 1555 1555 1.57 LINK TL TL A2110 O HOH A3130 1555 1555 3.18 LINK TL TL A2110 TL TL B2102 1555 1555 3.49 LINK TL TL A2111 O HOH A3013 1555 3655 2.85 LINK TL TL A2111 O HOH A3079 1555 1555 2.88 LINK TL TL A2111 O3' DG B2002 1555 2665 3.36 LINK TL TL A2111 OP1 DC B2003 1555 2665 2.77 LINK TL TL A2113 O HOH A3115 1555 1555 3.44 LINK TL TL A2113 O6 DG B2002 1555 1555 2.78 LINK TL TL A2113 TL TL B2102 1555 1555 1.42 LINK O HOH A3011 TL TL B2107 1555 1555 3.24 LINK O HOH A3015 TL TL B2106 1555 1555 3.03 LINK O HOH A3026 TL TL B2101 1555 1555 3.18 LINK O HOH A3115 TL TL B2102 1555 1555 3.43 LINK O HOH A3139 TL TL B2107 1555 1555 3.40 LINK O4' DC B2001 TL TL B2112 1555 1555 3.51 LINK N7 DG B2002 TL TL B2102 1555 1555 2.93 LINK O6 DG B2002 TL TL B2102 1555 1555 2.63 LINK N7 DG B2004 TL TL B2101 1555 1555 2.75 LINK O6 DG B2004 TL TL B2101 1555 1555 2.95 LINK O2 DT B2007 TL TL B2106 1555 1555 2.54 LINK O4' DT B2008 TL TL B2106 1555 1555 3.20 LINK O2 DC B2009 TL TL B2109 1555 1555 3.18 LINK O6 DG B2010 TL TL B2107 1555 1555 2.86 LINK N7 DG B2010 TL TL B2107 1555 1555 3.45 LINK O4' DG B2010 TL TL B2109 1555 1555 2.77 LINK N3 DG B2010 TL TL B2109 1555 1555 3.09 LINK TL TL B2101 O HOH B3046 1555 1555 3.15 LINK TL TL B2101 O HOH B3081 1555 1555 1.58 LINK TL TL B2101 O HOH B3082 1555 1555 1.62 LINK TL TL B2106 O HOH B3024 1555 1555 2.89 LINK TL TL B2107 O HOH B3135 1555 1555 2.52 LINK TL TL B2107 O HOH B3140 1555 1555 3.14 LINK TL TL B2109 O HOH B3003 1555 1555 1.62 LINK TL TL B2109 O HOH B3103 1555 1555 1.61 LINK TL TL B2109 O HOH B3131 1555 1555 3.31 LINK TL TL B2112 O HOH B3084 1555 2564 3.24 LINK TL TL B2112 O HOH B3124 1555 1555 1.84 SITE 1 AC1 8 TL A2108 HOH A3136 HOH A3137 HOH A3138 SITE 2 AC1 8 HOH A3139 TL B2107 HOH B3135 HOH B3140 SITE 1 AC2 4 DC B2003 DG B2004 HOH B3081 HOH B3082 SITE 1 AC3 4 DG A1010 TL A2110 TL A2113 DG B2002 SITE 1 AC4 3 DG A1004 HOH A3122 HOH A3123 SITE 1 AC5 4 DA A1005 DA A1006 DC B2009 HOH B3003 SITE 1 AC6 4 DG A1004 DA A1005 DG A1012 HOH A3120 SITE 1 AC7 6 DT A1007 DT A1008 HOH A3015 DT B2007 SITE 2 AC7 6 DT B2008 HOH B3024 SITE 1 AC8 6 DG A1002 MG A2013 TL A2108 HOH A3136 SITE 2 AC8 6 DG B2010 HOH B3135 SITE 1 AC9 8 DC A1001 DG A1002 MG A2013 HOH A3136 SITE 2 AC9 8 HOH A3139 DG B2010 TL B2107 HOH B3135 SITE 1 BC1 5 DG A1004 DC B2009 DG B2010 HOH B3003 SITE 2 BC1 5 HOH B3103 SITE 1 BC2 5 DG A1010 TL A2113 HOH A3115 HOH A3116 SITE 2 BC2 5 TL B2102 SITE 1 BC3 5 DC A1001 HOH A3013 HOH A3079 DG B2002 SITE 2 BC3 5 DC B2003 SITE 1 BC4 4 DG A1002 DC A1003 DC B2001 HOH B3124 SITE 1 BC5 4 DG A1010 TL A2110 DG B2002 TL B2102 CRYST1 25.944 40.744 66.202 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.038545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015105 0.00000