HEADER HYDROLASE 29-JUN-01 1JI3 TITLE CRYSTAL STRUCTURE OF THE FIRST THERMOSTABLE BACTERIAL LIPASE FROM TITLE 2 BACILLUS STEAROTHERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 VARIANT: P1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15[PREP4]; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE-60 KEYWDS LIPASE, METAL-BINDING, THERMOPHILIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.A.TYNDALL,S.SINCHAIKUL,L.A.FOTHERGILL-GILMORE,P.TAYLOR, AUTHOR 2 M.D.WALKINSHAW REVDAT 4 07-FEB-24 1JI3 1 REMARK SEQADV LINK REVDAT 3 04-OCT-17 1JI3 1 REMARK REVDAT 2 24-FEB-09 1JI3 1 VERSN REVDAT 1 01-NOV-02 1JI3 0 JRNL AUTH J.D.A.TYNDALL,S.SINCHAIKUL,L.A.FOTHERGILL-GILMORE,P.TAYLOR, JRNL AUTH 2 M.D.WALKINSHAW JRNL TITL CRYSTAL STRUCTURE OF A THERMOSTABLE LIPASE FROM BACILLUS JRNL TITL 2 STEAROTHERMOPHILUS P1 JRNL REF J.MOL.BIOL. V. 323 859 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12417199 JRNL DOI 10.1016/S0022-2836(02)01004-5 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 44812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1000 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.2000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6119 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6287 ; 0.005 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8553 ; 2.427 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 774 ; 5.453 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 899 ; 0.142 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7179 ; 0.002 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1513 ; 0.277 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1010 ;19.677 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 17 ; 0.234 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 852 ; 0.174 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3839 ; 1.322 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6149 ; 2.430 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2448 ; 3.823 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2404 ; 6.177 ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JI3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-01; 27-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SRS; SRS REMARK 200 BEAMLINE : PX14.1; PX9.5 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.480; 1.200 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47208 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.510 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, AMMONIUM SULPHATE, PH 6.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP AT 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.25000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.61850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.25000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.61850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 47 CB CG CD NE CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 284 O HOH B 578 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 61 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 VAL A 63 CG1 - CB - CG2 ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP A 76 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 175 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 182 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 215 CG - CD - NE ANGL. DEV. = -17.5 DEGREES REMARK 500 ARG A 215 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 227 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 243 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 LEU A 244 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 303 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 310 CB - CA - C ANGL. DEV. = -19.3 DEGREES REMARK 500 ASP A 310 CB - CG - OD1 ANGL. DEV. = -17.1 DEGREES REMARK 500 ASP A 310 CB - CG - OD2 ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP A 350 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 GLU B 23 CB - CA - C ANGL. DEV. = 14.3 DEGREES REMARK 500 GLU B 23 CG - CD - OE1 ANGL. DEV. = 12.5 DEGREES REMARK 500 MET B 24 CG - SD - CE ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG B 134 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 178 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 182 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 330 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP B 365 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 25 95.85 14.43 REMARK 500 SER A 113 -129.36 47.09 REMARK 500 HIS A 153 59.46 -102.46 REMARK 500 VAL A 203 -49.16 71.39 REMARK 500 ARG A 271 41.41 -155.46 REMARK 500 ILE A 319 -39.99 -137.54 REMARK 500 LYS A 329 -46.44 -130.33 REMARK 500 ASN A 367 92.04 -163.41 REMARK 500 PHE B 25 19.98 56.09 REMARK 500 SER B 113 -137.53 58.89 REMARK 500 PHE B 154 -0.62 -150.77 REMARK 500 ASP B 175 36.90 -97.19 REMARK 500 VAL B 203 -37.81 60.36 REMARK 500 ARG B 271 41.64 -152.51 REMARK 500 ASN B 304 82.03 -153.33 REMARK 500 ASP B 310 -163.11 -113.68 REMARK 500 ILE B 319 -42.36 -134.55 REMARK 500 LYS B 329 -46.89 -131.20 REMARK 500 ASN B 367 85.62 -166.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 1 SER A 2 145.27 REMARK 500 ALA B 1 SER B 2 137.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 ASP A 61 OD2 53.3 REMARK 620 3 HIS A 81 NE2 94.1 147.2 REMARK 620 4 HIS A 87 NE2 119.2 91.3 103.8 REMARK 620 5 ASP A 238 OD2 127.3 95.1 110.4 99.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 286 O REMARK 620 2 GLU A 360 OE2 84.1 REMARK 620 3 ASP A 365 OD2 107.0 98.0 REMARK 620 4 PRO A 366 O 168.1 91.2 84.4 REMARK 620 5 HOH A 415 O 87.4 85.8 165.4 81.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 61 OD2 REMARK 620 2 ASP B 61 OD1 53.6 REMARK 620 3 HIS B 81 NE2 148.5 94.9 REMARK 620 4 HIS B 87 NE2 97.7 120.8 99.7 REMARK 620 5 ASP B 238 OD2 101.1 134.8 102.6 97.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 286 O REMARK 620 2 GLU B 360 OE2 87.7 REMARK 620 3 ASP B 365 OD2 98.9 96.5 REMARK 620 4 PRO B 366 O 175.2 97.1 80.4 REMARK 620 5 HOH B 525 O 82.2 167.7 92.0 93.0 REMARK 620 6 HOH B 566 O 92.3 96.9 162.9 87.4 76.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CVL RELATED DB: PDB REMARK 900 BACTERIAL LIPASE REMARK 900 RELATED ID: 4LIP RELATED DB: PDB REMARK 900 BACTERIAL LIPASE DBREF 1JI3 A 1 388 UNP Q9L6D3 Q9L6D3_BACST 30 417 DBREF 1JI3 B 1 388 UNP Q9L6D3 Q9L6D3_BACST 30 417 SEQADV 1JI3 VAL A 63 UNP Q9L6D3 ALA 92 CONFLICT SEQADV 1JI3 VAL A 68 UNP Q9L6D3 ALA 97 CONFLICT SEQADV 1JI3 VAL B 63 UNP Q9L6D3 ALA 92 CONFLICT SEQADV 1JI3 VAL B 68 UNP Q9L6D3 ALA 97 CONFLICT SEQRES 1 A 388 ALA SER LEU ARG ALA ASN ASP ALA PRO ILE VAL LEU LEU SEQRES 2 A 388 HIS GLY PHE THR GLY TRP GLY ARG GLU GLU MET PHE GLY SEQRES 3 A 388 PHE LYS TYR TRP GLY GLY VAL ARG GLY ASP ILE GLU GLN SEQRES 4 A 388 TRP LEU ASN ASP ASN GLY TYR ARG THR TYR THR LEU ALA SEQRES 5 A 388 VAL GLY PRO LEU SER SER ASN TRP ASP ARG VAL CYS GLU SEQRES 6 A 388 ALA TYR VAL GLN LEU VAL GLY GLY THR VAL ASP TYR GLY SEQRES 7 A 388 ALA ALA HIS ALA ALA LYS HIS GLY HIS ALA ARG PHE GLY SEQRES 8 A 388 ARG THR TYR PRO GLY LEU LEU PRO GLU LEU LYS ARG GLY SEQRES 9 A 388 GLY ARG ILE HIS ILE ILE ALA HIS SER GLN GLY GLY GLN SEQRES 10 A 388 THR ALA ARG MET LEU VAL SER LEU LEU GLU ASN GLY SER SEQRES 11 A 388 GLN GLU GLU ARG GLU TYR ALA LYS ALA HIS ASN VAL SER SEQRES 12 A 388 LEU SER PRO LEU PHE GLU GLY GLY HIS HIS PHE VAL LEU SEQRES 13 A 388 SER VAL THR THR ILE ALA THR PRO HIS ASP GLY THR THR SEQRES 14 A 388 LEU VAL ASN MET VAL ASP PHE THR ASP ARG PHE PHE ASP SEQRES 15 A 388 LEU GLN LYS ALA VAL LEU GLU ALA ALA ALA VAL ALA SER SEQRES 16 A 388 ASN VAL PRO TYR THR SER GLN VAL TYR ASP PHE LYS LEU SEQRES 17 A 388 ASP GLN TRP GLY LEU ARG ARG GLN PRO GLY GLU SER PHE SEQRES 18 A 388 ASP HIS TYR PHE GLU ARG LEU LYS ARG SER PRO VAL TRP SEQRES 19 A 388 THR SER THR ASP THR ALA ARG TYR ASP LEU SER VAL SER SEQRES 20 A 388 GLY ALA GLU LYS LEU ASN GLN TRP VAL GLN ALA SER PRO SEQRES 21 A 388 ASN THR TYR TYR LEU SER PHE SER THR GLU ARG THR TYR SEQRES 22 A 388 ARG GLY ALA LEU THR GLY ASN HIS TYR PRO GLU LEU GLY SEQRES 23 A 388 MET ASN ALA PHE SER ALA VAL VAL CYS ALA PRO PHE LEU SEQRES 24 A 388 GLY SER TYR ARG ASN PRO THR LEU GLY ILE ASP SER HIS SEQRES 25 A 388 TRP LEU GLU ASN ASP GLY ILE VAL ASN THR ILE SER MET SEQRES 26 A 388 ASN GLY PRO LYS ARG GLY SER ASN ASP ARG ILE VAL PRO SEQRES 27 A 388 TYR ASP GLY THR LEU LYS LYS GLY VAL TRP ASN ASP MET SEQRES 28 A 388 GLY THR TYR ASN VAL ASP HIS LEU GLU ILE ILE GLY VAL SEQRES 29 A 388 ASP PRO ASN PRO SER PHE ASP ILE ARG ALA PHE TYR LEU SEQRES 30 A 388 ARG LEU ALA GLU GLN LEU ALA SER LEU GLN PRO SEQRES 1 B 388 ALA SER LEU ARG ALA ASN ASP ALA PRO ILE VAL LEU LEU SEQRES 2 B 388 HIS GLY PHE THR GLY TRP GLY ARG GLU GLU MET PHE GLY SEQRES 3 B 388 PHE LYS TYR TRP GLY GLY VAL ARG GLY ASP ILE GLU GLN SEQRES 4 B 388 TRP LEU ASN ASP ASN GLY TYR ARG THR TYR THR LEU ALA SEQRES 5 B 388 VAL GLY PRO LEU SER SER ASN TRP ASP ARG VAL CYS GLU SEQRES 6 B 388 ALA TYR VAL GLN LEU VAL GLY GLY THR VAL ASP TYR GLY SEQRES 7 B 388 ALA ALA HIS ALA ALA LYS HIS GLY HIS ALA ARG PHE GLY SEQRES 8 B 388 ARG THR TYR PRO GLY LEU LEU PRO GLU LEU LYS ARG GLY SEQRES 9 B 388 GLY ARG ILE HIS ILE ILE ALA HIS SER GLN GLY GLY GLN SEQRES 10 B 388 THR ALA ARG MET LEU VAL SER LEU LEU GLU ASN GLY SER SEQRES 11 B 388 GLN GLU GLU ARG GLU TYR ALA LYS ALA HIS ASN VAL SER SEQRES 12 B 388 LEU SER PRO LEU PHE GLU GLY GLY HIS HIS PHE VAL LEU SEQRES 13 B 388 SER VAL THR THR ILE ALA THR PRO HIS ASP GLY THR THR SEQRES 14 B 388 LEU VAL ASN MET VAL ASP PHE THR ASP ARG PHE PHE ASP SEQRES 15 B 388 LEU GLN LYS ALA VAL LEU GLU ALA ALA ALA VAL ALA SER SEQRES 16 B 388 ASN VAL PRO TYR THR SER GLN VAL TYR ASP PHE LYS LEU SEQRES 17 B 388 ASP GLN TRP GLY LEU ARG ARG GLN PRO GLY GLU SER PHE SEQRES 18 B 388 ASP HIS TYR PHE GLU ARG LEU LYS ARG SER PRO VAL TRP SEQRES 19 B 388 THR SER THR ASP THR ALA ARG TYR ASP LEU SER VAL SER SEQRES 20 B 388 GLY ALA GLU LYS LEU ASN GLN TRP VAL GLN ALA SER PRO SEQRES 21 B 388 ASN THR TYR TYR LEU SER PHE SER THR GLU ARG THR TYR SEQRES 22 B 388 ARG GLY ALA LEU THR GLY ASN HIS TYR PRO GLU LEU GLY SEQRES 23 B 388 MET ASN ALA PHE SER ALA VAL VAL CYS ALA PRO PHE LEU SEQRES 24 B 388 GLY SER TYR ARG ASN PRO THR LEU GLY ILE ASP SER HIS SEQRES 25 B 388 TRP LEU GLU ASN ASP GLY ILE VAL ASN THR ILE SER MET SEQRES 26 B 388 ASN GLY PRO LYS ARG GLY SER ASN ASP ARG ILE VAL PRO SEQRES 27 B 388 TYR ASP GLY THR LEU LYS LYS GLY VAL TRP ASN ASP MET SEQRES 28 B 388 GLY THR TYR ASN VAL ASP HIS LEU GLU ILE ILE GLY VAL SEQRES 29 B 388 ASP PRO ASN PRO SER PHE ASP ILE ARG ALA PHE TYR LEU SEQRES 30 B 388 ARG LEU ALA GLU GLN LEU ALA SER LEU GLN PRO HET CA A 401 1 HET ZN A 402 1 HET CA B 403 1 HET ZN B 404 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 3 CA 2(CA 2+) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *347(H2 O) HELIX 1 1 GLY A 31 GLY A 35 5 5 HELIX 2 2 ASP A 36 ASN A 44 1 9 HELIX 3 3 SER A 58 GLY A 72 1 15 HELIX 4 4 GLY A 78 GLY A 86 1 9 HELIX 5 5 LEU A 98 GLY A 104 5 7 HELIX 6 6 GLN A 114 GLY A 129 1 16 HELIX 7 7 SER A 130 ASN A 141 1 12 HELIX 8 8 SER A 145 GLU A 149 5 5 HELIX 9 9 THR A 168 MET A 173 5 6 HELIX 10 10 ASP A 175 ALA A 191 1 17 HELIX 11 11 LEU A 208 GLY A 212 5 5 HELIX 12 12 SER A 220 ARG A 230 1 11 HELIX 13 13 SER A 231 SER A 236 1 6 HELIX 14 14 THR A 239 SER A 245 1 7 HELIX 15 15 SER A 245 VAL A 256 1 12 HELIX 16 16 ASN A 288 CYS A 295 1 8 HELIX 17 17 CYS A 295 GLY A 300 1 6 HELIX 18 18 PRO A 305 GLY A 308 5 4 HELIX 19 19 ASP A 310 LEU A 314 5 5 HELIX 20 20 THR A 322 MET A 325 5 4 HELIX 21 21 ASP A 371 SER A 385 1 15 HELIX 22 22 GLU B 23 PHE B 27 5 5 HELIX 23 23 GLY B 31 GLY B 35 5 5 HELIX 24 24 ASP B 36 ASN B 44 1 9 HELIX 25 25 SER B 58 GLY B 72 1 15 HELIX 26 26 GLY B 78 GLY B 86 1 9 HELIX 27 27 LEU B 98 GLY B 104 5 7 HELIX 28 28 GLN B 114 GLY B 129 1 16 HELIX 29 29 SER B 130 HIS B 140 1 11 HELIX 30 30 SER B 145 GLU B 149 5 5 HELIX 31 31 THR B 168 MET B 173 5 6 HELIX 32 32 ASP B 175 ALA B 191 1 17 HELIX 33 33 LEU B 208 GLY B 212 5 5 HELIX 34 34 SER B 220 LYS B 229 1 10 HELIX 35 35 SER B 231 SER B 236 1 6 HELIX 36 36 THR B 239 SER B 245 1 7 HELIX 37 37 SER B 245 VAL B 256 1 12 HELIX 38 38 ASN B 288 CYS B 295 1 8 HELIX 39 39 CYS B 295 GLY B 300 1 6 HELIX 40 40 PRO B 305 GLY B 308 5 4 HELIX 41 41 ASP B 310 LEU B 314 5 5 HELIX 42 42 THR B 322 MET B 325 5 4 HELIX 43 43 ASP B 371 SER B 385 1 15 SHEET 1 A 7 THR A 48 THR A 50 0 SHEET 2 A 7 ILE A 10 LEU A 13 1 O ILE A 10 N TYR A 49 SHEET 3 A 7 ILE A 107 HIS A 112 1 O HIS A 108 N VAL A 11 SHEET 4 A 7 VAL A 155 ILE A 161 1 N LEU A 156 O ILE A 107 SHEET 5 A 7 TYR A 263 THR A 269 1 N TYR A 263 O LEU A 156 SHEET 6 A 7 TRP A 348 TYR A 354 1 N ASN A 349 O TYR A 264 SHEET 7 A 7 ILE A 336 PRO A 338 1 N VAL A 337 O TRP A 348 SHEET 1 B 2 GLY A 73 ASP A 76 0 SHEET 2 B 2 PHE A 90 TYR A 94 -1 N GLY A 91 O VAL A 75 SHEET 1 C 2 THR A 272 ARG A 274 0 SHEET 2 C 2 HIS A 281 PRO A 283 -1 N TYR A 282 O TYR A 273 SHEET 1 D 7 THR B 48 THR B 50 0 SHEET 2 D 7 ILE B 10 LEU B 13 1 O ILE B 10 N TYR B 49 SHEET 3 D 7 ILE B 107 HIS B 112 1 O HIS B 108 N VAL B 11 SHEET 4 D 7 VAL B 155 ILE B 161 1 N LEU B 156 O ILE B 107 SHEET 5 D 7 TYR B 263 GLU B 270 1 O TYR B 263 N VAL B 158 SHEET 6 D 7 TRP B 348 ASN B 355 1 N ASN B 349 O TYR B 264 SHEET 7 D 7 ILE B 336 PRO B 338 1 N VAL B 337 O TRP B 348 SHEET 1 E 2 GLY B 73 ASP B 76 0 SHEET 2 E 2 PHE B 90 TYR B 94 -1 N GLY B 91 O VAL B 75 SHEET 1 F 2 THR B 272 ARG B 274 0 SHEET 2 F 2 HIS B 281 PRO B 283 -1 O TYR B 282 N TYR B 273 LINK OD1 ASP A 61 ZN ZN A 402 1555 1555 2.13 LINK OD2 ASP A 61 ZN ZN A 402 1555 1555 2.51 LINK NE2 HIS A 81 ZN ZN A 402 1555 1555 1.99 LINK NE2 HIS A 87 ZN ZN A 402 1555 1555 2.12 LINK OD2 ASP A 238 ZN ZN A 402 1555 1555 1.95 LINK O GLY A 286 CA CA A 401 1555 1555 2.29 LINK OE2 GLU A 360 CA CA A 401 1555 1555 2.43 LINK OD2 ASP A 365 CA CA A 401 1555 1555 2.27 LINK O PRO A 366 CA CA A 401 1555 1555 2.44 LINK CA CA A 401 O HOH A 415 1555 1555 2.23 LINK OD2 ASP B 61 ZN ZN B 404 1555 1555 2.52 LINK OD1 ASP B 61 ZN ZN B 404 1555 1555 2.12 LINK NE2 HIS B 81 ZN ZN B 404 1555 1555 2.00 LINK NE2 HIS B 87 ZN ZN B 404 1555 1555 2.14 LINK OD2 ASP B 238 ZN ZN B 404 1555 1555 1.89 LINK O GLY B 286 CA CA B 403 1555 1555 2.29 LINK OE2 GLU B 360 CA CA B 403 1555 1555 2.31 LINK OD2 ASP B 365 CA CA B 403 1555 1555 2.37 LINK O PRO B 366 CA CA B 403 1555 1555 2.48 LINK CA CA B 403 O HOH B 525 1555 1555 2.33 LINK CA CA B 403 O HOH B 566 1555 1555 2.54 SITE 1 AC1 5 GLY A 286 GLU A 360 ASP A 365 PRO A 366 SITE 2 AC1 5 HOH A 415 SITE 1 AC2 4 ASP A 61 HIS A 81 HIS A 87 ASP A 238 SITE 1 AC3 6 GLY B 286 GLU B 360 ASP B 365 PRO B 366 SITE 2 AC3 6 HOH B 525 HOH B 566 SITE 1 AC4 4 ASP B 61 HIS B 81 HIS B 87 ASP B 238 CRYST1 118.500 81.237 99.782 90.00 96.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008439 0.000000 0.000937 0.00000 SCALE2 0.000000 0.012310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010083 0.00000