HEADER LIGASE 02-JUL-01 1JIJ TITLE CRYSTAL STRUCTURE OF S. AUREUS TYRRS IN COMPLEX WITH SB-239629 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TYROSINE--TRNA LIGASE; TYRRS; TYROSYL-TRANSFER RNA COMPND 5 SYNTHETASE; COMPND 6 EC: 6.1.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 VARIANT: AUREUS N315; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYROSYL-TRNA SYNTHETASE, STAPHYLOCOCCUS AUREUS, TRUNCATION, STRUCTURE KEYWDS 2 BASED INHIBITOR DESIGN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR X.QIU,C.A.JANSON,W.W.SMITH,R.L.JARVEST REVDAT 6 07-FEB-24 1JIJ 1 REMARK REVDAT 5 04-OCT-17 1JIJ 1 REMARK REVDAT 4 13-JUL-11 1JIJ 1 VERSN REVDAT 3 24-FEB-09 1JIJ 1 VERSN REVDAT 2 01-APR-03 1JIJ 1 JRNL REVDAT 1 26-OCT-01 1JIJ 0 JRNL AUTH X.QIU,C.A.JANSON,W.W.SMITH,S.M.GREEN,P.MCDEVITT,K.JOHANSON, JRNL AUTH 2 P.CARTER,M.HIBBS,C.LEWIS,A.CHALKER,A.FOSBERRY,J.LALONDE, JRNL AUTH 3 J.BERGE,P.BROWN,C.S.HOUGE-FRYDRYCH,R.L.JARVEST JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TYROSYL-TRNA JRNL TITL 2 SYNTHETASE IN COMPLEX WITH A CLASS OF POTENT AND SPECIFIC JRNL TITL 3 INHIBITORS. JRNL REF PROTEIN SCI. V. 10 2008 2001 JRNL REFN ISSN 0961-8368 JRNL PMID 11567092 JRNL DOI 10.1110/PS.18001 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 310 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-96 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : X-GEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8399 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 21.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, CACL2, PH 7.25, VAPOR REMARK 280 DIFFUSION, SITTING DROP AT 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.57000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.57000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.04500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.46500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.04500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.46500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.57000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.04500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.46500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.57000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.04500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.46500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM THE REMARK 300 MONOMER IN ASU AND THE OPERATION -X,Y,-Z+1/2 ---- OPERATION 3+1C REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 214.71000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 143.14000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 321 REMARK 465 ALA A 322 REMARK 465 LEU A 323 REMARK 465 PHE A 324 REMARK 465 SER A 325 REMARK 465 GLY A 326 REMARK 465 ASP A 327 REMARK 465 LEU A 328 REMARK 465 LYS A 329 REMARK 465 SER A 330 REMARK 465 LEU A 331 REMARK 465 SER A 332 REMARK 465 ALA A 333 REMARK 465 LYS A 334 REMARK 465 GLU A 335 REMARK 465 LEU A 336 REMARK 465 LYS A 337 REMARK 465 ASP A 338 REMARK 465 GLY A 339 REMARK 465 PHE A 340 REMARK 465 LYS A 341 REMARK 465 ASP A 342 REMARK 465 VAL A 343 REMARK 465 PRO A 344 REMARK 465 GLN A 345 REMARK 465 VAL A 346 REMARK 465 THR A 347 REMARK 465 LEU A 348 REMARK 465 SER A 349 REMARK 465 ASN A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 THR A 353 REMARK 465 ASN A 354 REMARK 465 ILE A 355 REMARK 465 VAL A 356 REMARK 465 GLU A 357 REMARK 465 VAL A 358 REMARK 465 LEU A 359 REMARK 465 ILE A 360 REMARK 465 GLU A 361 REMARK 465 THR A 362 REMARK 465 GLY A 363 REMARK 465 ILE A 364 REMARK 465 SER A 365 REMARK 465 PRO A 366 REMARK 465 SER A 367 REMARK 465 LYS A 368 REMARK 465 ARG A 369 REMARK 465 GLN A 370 REMARK 465 ALA A 371 REMARK 465 ARG A 372 REMARK 465 GLU A 373 REMARK 465 ASP A 374 REMARK 465 VAL A 375 REMARK 465 ASN A 376 REMARK 465 ASN A 377 REMARK 465 GLY A 378 REMARK 465 ALA A 379 REMARK 465 ILE A 380 REMARK 465 TYR A 381 REMARK 465 ILE A 382 REMARK 465 ASN A 383 REMARK 465 GLY A 384 REMARK 465 GLU A 385 REMARK 465 ARG A 386 REMARK 465 GLN A 387 REMARK 465 GLN A 388 REMARK 465 ASP A 389 REMARK 465 VAL A 390 REMARK 465 ASN A 391 REMARK 465 TYR A 392 REMARK 465 ALA A 393 REMARK 465 LEU A 394 REMARK 465 ALA A 395 REMARK 465 PRO A 396 REMARK 465 GLU A 397 REMARK 465 ASP A 398 REMARK 465 LYS A 399 REMARK 465 ILE A 400 REMARK 465 ASP A 401 REMARK 465 GLY A 402 REMARK 465 GLU A 403 REMARK 465 PHE A 404 REMARK 465 THR A 405 REMARK 465 ILE A 406 REMARK 465 ILE A 407 REMARK 465 ARG A 408 REMARK 465 ARG A 409 REMARK 465 GLY A 410 REMARK 465 LYS A 411 REMARK 465 LYS A 412 REMARK 465 LYS A 413 REMARK 465 TYR A 414 REMARK 465 PHE A 415 REMARK 465 MET A 416 REMARK 465 VAL A 417 REMARK 465 ASN A 418 REMARK 465 TYR A 419 REMARK 465 GLN A 420 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 33.67 169.03 REMARK 500 GLN A 17 146.70 -175.27 REMARK 500 ASP A 26 -70.98 -54.86 REMARK 500 LYS A 30 -58.57 -148.80 REMARK 500 ILE A 48 -16.06 -48.19 REMARK 500 LEU A 52 -74.86 -49.69 REMARK 500 PRO A 81 -1.40 -59.30 REMARK 500 LYS A 84 146.36 -36.19 REMARK 500 ARG A 88 -162.58 -75.53 REMARK 500 HIS A 108 -19.91 -41.00 REMARK 500 HIS A 117 52.25 -143.59 REMARK 500 GLN A 130 -83.94 -89.94 REMARK 500 ILE A 131 120.38 -17.07 REMARK 500 SER A 135 -76.39 -52.13 REMARK 500 ARG A 138 -73.62 -60.67 REMARK 500 HIS A 143 58.97 -107.43 REMARK 500 VAL A 144 75.21 -151.12 REMARK 500 LEU A 150 5.65 -67.44 REMARK 500 ASN A 186 3.98 90.73 REMARK 500 ASP A 195 -0.66 -57.22 REMARK 500 TYR A 211 104.36 178.81 REMARK 500 GLN A 213 94.29 1.02 REMARK 500 THR A 214 43.79 -58.64 REMARK 500 ASP A 215 50.54 73.80 REMARK 500 PRO A 222 -160.87 -79.39 REMARK 500 LYS A 231 91.93 1.61 REMARK 500 SER A 237 81.18 -67.97 REMARK 500 ALA A 239 -158.69 -90.84 REMARK 500 LEU A 242 10.95 -66.74 REMARK 500 GLU A 245 45.17 -91.39 REMARK 500 LYS A 246 -33.55 -158.75 REMARK 500 GLU A 262 -74.36 -60.90 REMARK 500 ASP A 263 43.49 -69.85 REMARK 500 GLU A 288 -6.78 -145.39 REMARK 500 PRO A 290 -15.53 -42.52 REMARK 500 ALA A 295 -73.88 -53.25 REMARK 500 ALA A 300 -74.73 -40.33 REMARK 500 ASN A 314 -70.20 -53.97 REMARK 500 ARG A 318 14.54 -64.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 250 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 629 A 421 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JII RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT INHIBITOR REMARK 900 RELATED ID: 1JIK RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT INHIBITOR REMARK 900 RELATED ID: 1JIL RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT INHIBITOR DBREF 1JIJ A 1 420 GB 13701524 BAB42818 1 420 SEQRES 1 A 420 MET THR ASN VAL LEU ILE GLU ASP LEU LYS TRP ARG GLY SEQRES 2 A 420 LEU ILE TYR GLN GLN THR ASP GLU GLN GLY ILE GLU ASP SEQRES 3 A 420 LEU LEU ASN LYS GLU GLN VAL THR LEU TYR CYS GLY ALA SEQRES 4 A 420 ASP PRO THR ALA ASP SER LEU HIS ILE GLY HIS LEU LEU SEQRES 5 A 420 PRO PHE LEU THR LEU ARG ARG PHE GLN GLU HIS GLY HIS SEQRES 6 A 420 ARG PRO ILE VAL LEU ILE GLY GLY GLY THR GLY MET ILE SEQRES 7 A 420 GLY ASP PRO SER GLY LYS SER GLU GLU ARG VAL LEU GLN SEQRES 8 A 420 THR GLU GLU GLN VAL ASP LYS ASN ILE GLU GLY ILE SER SEQRES 9 A 420 LYS GLN MET HIS ASN ILE PHE GLU PHE GLY THR ASP HIS SEQRES 10 A 420 GLY ALA VAL LEU VAL ASN ASN ARG ASP TRP LEU GLY GLN SEQRES 11 A 420 ILE SER LEU ILE SER PHE LEU ARG ASP TYR GLY LYS HIS SEQRES 12 A 420 VAL GLY VAL ASN TYR MET LEU GLY LYS ASP SER ILE GLN SEQRES 13 A 420 SER ARG LEU GLU HIS GLY ILE SER TYR THR GLU PHE THR SEQRES 14 A 420 TYR THR ILE LEU GLN ALA ILE ASP PHE GLY HIS LEU ASN SEQRES 15 A 420 ARG GLU LEU ASN CYS LYS ILE GLN VAL GLY GLY SER ASP SEQRES 16 A 420 GLN TRP GLY ASN ILE THR SER GLY ILE GLU LEU MET ARG SEQRES 17 A 420 ARG MET TYR GLY GLN THR ASP ALA TYR GLY LEU THR ILE SEQRES 18 A 420 PRO LEU VAL THR LYS SER ASP GLY LYS LYS PHE GLY LYS SEQRES 19 A 420 SER GLU SER GLY ALA VAL TRP LEU ASP ALA GLU LYS THR SEQRES 20 A 420 SER PRO TYR GLU PHE TYR GLN PHE TRP ILE ASN GLN SER SEQRES 21 A 420 ASP GLU ASP VAL ILE LYS PHE LEU LYS TYR PHE THR PHE SEQRES 22 A 420 LEU GLY LYS GLU GLU ILE ASP ARG LEU GLU GLN SER LYS SEQRES 23 A 420 ASN GLU ALA PRO HIS LEU ARG GLU ALA GLN LYS THR LEU SEQRES 24 A 420 ALA GLU GLU VAL THR LYS PHE ILE HIS GLY GLU ASP ALA SEQRES 25 A 420 LEU ASN ASP ALA ILE ARG ILE SER GLN ALA LEU PHE SER SEQRES 26 A 420 GLY ASP LEU LYS SER LEU SER ALA LYS GLU LEU LYS ASP SEQRES 27 A 420 GLY PHE LYS ASP VAL PRO GLN VAL THR LEU SER ASN ASP SEQRES 28 A 420 THR THR ASN ILE VAL GLU VAL LEU ILE GLU THR GLY ILE SEQRES 29 A 420 SER PRO SER LYS ARG GLN ALA ARG GLU ASP VAL ASN ASN SEQRES 30 A 420 GLY ALA ILE TYR ILE ASN GLY GLU ARG GLN GLN ASP VAL SEQRES 31 A 420 ASN TYR ALA LEU ALA PRO GLU ASP LYS ILE ASP GLY GLU SEQRES 32 A 420 PHE THR ILE ILE ARG ARG GLY LYS LYS LYS TYR PHE MET SEQRES 33 A 420 VAL ASN TYR GLN HET 629 A 421 29 HETNAM 629 [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]-(1,3,4,5- HETNAM 2 629 TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN-2-YL)- ACETIC HETNAM 3 629 ACID HETSYN 629 SB-239629 FORMUL 2 629 C17 H25 N3 O9 HELIX 1 1 ASN A 3 LYS A 10 1 8 HELIX 2 2 ASP A 20 ASN A 29 1 10 HELIX 3 3 HIS A 50 HIS A 63 1 14 HELIX 4 4 THR A 92 PHE A 111 1 20 HELIX 5 5 ARG A 125 TRP A 127 5 3 HELIX 6 6 SER A 132 TYR A 140 1 9 HELIX 7 7 GLY A 141 VAL A 144 5 4 HELIX 8 8 GLY A 145 LEU A 150 1 6 HELIX 9 9 LYS A 152 HIS A 161 1 10 HELIX 10 10 SER A 164 THR A 169 1 6 HELIX 11 11 THR A 169 LEU A 185 1 17 HELIX 12 12 GLY A 193 ASP A 195 5 3 HELIX 13 13 GLN A 196 TYR A 211 1 16 HELIX 14 14 SER A 248 ASN A 258 1 11 HELIX 15 15 VAL A 264 THR A 272 1 9 HELIX 16 16 GLY A 275 ALA A 289 1 15 HELIX 17 17 ARG A 293 GLY A 309 1 17 HELIX 18 18 GLU A 310 ARG A 318 1 9 SHEET 1 A 3 GLN A 17 GLN A 18 0 SHEET 2 A 3 TYR A 217 THR A 220 -1 N THR A 220 O GLN A 17 SHEET 3 A 3 ILE A 189 GLY A 192 1 O GLN A 190 N LEU A 219 SHEET 1 B 3 THR A 34 ALA A 39 0 SHEET 2 B 3 ARG A 66 ILE A 71 1 O ARG A 66 N LEU A 35 SHEET 3 B 3 VAL A 120 ASN A 123 1 O VAL A 120 N VAL A 69 SITE 1 AC1 15 TYR A 36 GLY A 38 ALA A 39 ASP A 40 SITE 2 AC1 15 GLY A 49 HIS A 50 LEU A 70 ASP A 80 SITE 3 AC1 15 TYR A 170 GLN A 174 ASP A 177 GLY A 193 SITE 4 AC1 15 ASP A 195 GLN A 196 ASN A 199 CRYST1 70.090 98.930 143.140 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014270 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006990 0.00000