HEADER HYDROLASE 03-JUL-01 1JIZ TITLE CRYSTAL STRUCTURE ANALYSIS OF HUMAN MACROPHAGE ELASTASE MMP-12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE ELASTASE MMP-12; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: MACROPHAGE METALLOELASTASE; COMPND 6 EC: 3.4.24.65; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MATRIX METALLOPROTEINASE, MMP-12, CHRONIC OBSTRUCTIVE PULMONARY KEYWDS 2 DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.NAR,K.WERLE,M.M.T.BAUER,H.DOLLINGER,B.JUNG REVDAT 4 07-FEB-24 1JIZ 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1JIZ 1 VERSN REVDAT 2 01-APR-03 1JIZ 1 JRNL REVDAT 1 03-JUL-02 1JIZ 0 JRNL AUTH H.NAR,K.WERLE,M.M.BAUER,H.DOLLINGER,B.JUNG JRNL TITL CRYSTAL STRUCTURE OF HUMAN MACROPHAGE ELASTASE (MMP-12) IN JRNL TITL 2 COMPLEX WITH A HYDROXAMIC ACID INHIBITOR. JRNL REF J.MOL.BIOL. V. 312 743 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11575929 JRNL DOI 10.1006/JMBI.2001.4953 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2000 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1796520.150 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 797 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2411 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 158 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.64000 REMARK 3 B22 (A**2) : -2.03000 REMARK 3 B33 (A**2) : -3.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.620 ; 0.750 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.090 ; 1.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.000 ; 1.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.600 ; 1.250 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : PAREXI.PRO REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : TOPEXI.PRO REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1JIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15757 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.70000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.60000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.70000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.60000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.70000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.60000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.60000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.70000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.60000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN B 147 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 107 -119.87 -129.68 REMARK 500 PRO A 139 -3.80 -56.48 REMARK 500 ARG B 150 138.30 -179.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 261 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 25 OD2 REMARK 620 2 ASP A 25 OD1 42.0 REMARK 620 3 GLU A 100 OE1 94.5 103.5 REMARK 620 4 GLU A 100 O 161.4 156.1 77.8 REMARK 620 5 GLU A 102 O 84.7 115.9 115.5 83.5 REMARK 620 6 HOH A 722 O 96.4 55.1 94.7 101.1 149.7 REMARK 620 7 HOH A 855 O 103.3 75.3 148.9 91.3 91.6 58.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 260 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 59 O REMARK 620 2 GLY A 91 O 156.0 REMARK 620 3 GLY A 93 O 82.4 100.9 REMARK 620 4 ASP A 95 OD1 98.4 104.8 96.2 REMARK 620 5 HOH A 555 O 72.0 86.6 70.5 164.2 REMARK 620 6 HOH A 857 O 95.4 74.3 162.8 101.0 92.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 258 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 ASP A 71 OD1 110.9 REMARK 620 3 HIS A 84 NE2 116.2 111.0 REMARK 620 4 HIS A 97 ND1 109.7 103.8 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 259 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 76 OD2 REMARK 620 2 GLY A 77 O 90.1 REMARK 620 3 GLY A 79 O 87.4 86.4 REMARK 620 4 ILE A 81 O 93.4 174.8 89.9 REMARK 620 5 ASP A 99 OD2 94.2 92.7 178.2 90.9 REMARK 620 6 GLU A 102 OE2 167.0 84.8 80.4 91.0 97.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 257 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 NE2 REMARK 620 2 HIS A 123 NE2 101.7 REMARK 620 3 HIS A 129 NE2 100.3 94.2 REMARK 620 4 CGS A 998 O48 97.2 98.0 156.1 REMARK 620 5 CGS A 998 O47 118.5 139.5 83.8 73.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 261 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 25 OD2 REMARK 620 2 ASP B 25 OD1 44.6 REMARK 620 3 GLU B 100 O 154.1 158.5 REMARK 620 4 GLU B 100 OE1 91.6 101.3 74.6 REMARK 620 5 GLU B 102 O 84.5 119.4 80.9 112.3 REMARK 620 6 HOH B 851 O 113.4 76.2 91.4 134.3 107.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 260 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 59 O REMARK 620 2 GLY B 91 O 155.1 REMARK 620 3 GLY B 93 O 84.3 100.6 REMARK 620 4 ASP B 95 OD1 94.8 108.7 96.5 REMARK 620 5 HOH B 572 O 69.6 87.2 79.1 164.0 REMARK 620 6 HOH B 863 O 89.2 84.1 172.9 86.9 95.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 258 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 69 NE2 REMARK 620 2 ASP B 71 OD1 110.8 REMARK 620 3 HIS B 84 NE2 117.2 112.9 REMARK 620 4 HIS B 97 ND1 109.4 100.8 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 259 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 76 OD2 REMARK 620 2 GLY B 77 O 91.1 REMARK 620 3 GLY B 79 O 87.7 92.5 REMARK 620 4 ILE B 81 O 92.0 175.4 91.0 REMARK 620 5 ASP B 99 OD2 92.6 91.6 175.9 84.9 REMARK 620 6 GLU B 102 OE2 171.7 87.2 84.3 90.2 95.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 257 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 119 NE2 REMARK 620 2 HIS B 123 NE2 102.4 REMARK 620 3 HIS B 129 NE2 101.7 95.8 REMARK 620 4 CGS B 999 O47 119.2 137.9 82.2 REMARK 620 5 CGS B 999 O48 99.2 95.2 153.6 73.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CGS A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CGS B 999 DBREF 1JIZ A 1 165 UNP P39900 MMP12_HUMAN 100 264 DBREF 1JIZ B 1 165 UNP P39900 MMP12_HUMAN 100 264 SEQADV 1JIZ GLY A -1 UNP P39900 CLONING ARTIFACT SEQADV 1JIZ GLY B -1 UNP P39900 CLONING ARTIFACT SEQRES 1 A 166 GLY PHE ARG GLU MET PRO GLY GLY PRO VAL TRP ARG LYS SEQRES 2 A 166 HIS TYR ILE THR TYR ARG ILE ASN ASN TYR THR PRO ASP SEQRES 3 A 166 MET ASN ARG GLU ASP VAL ASP TYR ALA ILE ARG LYS ALA SEQRES 4 A 166 PHE GLN VAL TRP SER ASN VAL THR PRO LEU LYS PHE SER SEQRES 5 A 166 LYS ILE ASN THR GLY MET ALA ASP ILE LEU VAL VAL PHE SEQRES 6 A 166 ALA ARG GLY ALA HIS GLY ASP PHE HIS ALA PHE ASP GLY SEQRES 7 A 166 LYS GLY GLY ILE LEU ALA HIS ALA PHE GLY PRO GLY SER SEQRES 8 A 166 GLY ILE GLY GLY ASP ALA HIS PHE ASP GLU ASP GLU PHE SEQRES 9 A 166 TRP THR THR HIS SER GLY GLY THR ASN LEU PHE LEU THR SEQRES 10 A 166 ALA VAL HIS GLU ILE GLY HIS SER LEU GLY LEU GLY HIS SEQRES 11 A 166 SER SER ASP PRO LYS ALA VAL MET PHE PRO THR TYR LYS SEQRES 12 A 166 TYR VAL ASP ILE ASN THR PHE ARG LEU SER ALA ASP ASP SEQRES 13 A 166 ILE ARG GLY ILE GLN SER LEU TYR GLY ASP SEQRES 1 B 166 GLY PHE ARG GLU MET PRO GLY GLY PRO VAL TRP ARG LYS SEQRES 2 B 166 HIS TYR ILE THR TYR ARG ILE ASN ASN TYR THR PRO ASP SEQRES 3 B 166 MET ASN ARG GLU ASP VAL ASP TYR ALA ILE ARG LYS ALA SEQRES 4 B 166 PHE GLN VAL TRP SER ASN VAL THR PRO LEU LYS PHE SER SEQRES 5 B 166 LYS ILE ASN THR GLY MET ALA ASP ILE LEU VAL VAL PHE SEQRES 6 B 166 ALA ARG GLY ALA HIS GLY ASP PHE HIS ALA PHE ASP GLY SEQRES 7 B 166 LYS GLY GLY ILE LEU ALA HIS ALA PHE GLY PRO GLY SER SEQRES 8 B 166 GLY ILE GLY GLY ASP ALA HIS PHE ASP GLU ASP GLU PHE SEQRES 9 B 166 TRP THR THR HIS SER GLY GLY THR ASN LEU PHE LEU THR SEQRES 10 B 166 ALA VAL HIS GLU ILE GLY HIS SER LEU GLY LEU GLY HIS SEQRES 11 B 166 SER SER ASP PRO LYS ALA VAL MET PHE PRO THR TYR LYS SEQRES 12 B 166 TYR VAL ASP ILE ASN THR PHE ARG LEU SER ALA ASP ASP SEQRES 13 B 166 ILE ARG GLY ILE GLN SER LEU TYR GLY ASP HET ZN A 257 1 HET ZN A 258 1 HET CA A 259 1 HET CA A 260 1 HET CA A 261 1 HET CGS A 998 27 HET ZN B 257 1 HET ZN B 258 1 HET CA B 259 1 HET CA B 260 1 HET CA B 261 1 HET CGS B 999 27 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM CGS N-HYDROXY-2(R)-[[(4-METHOXYPHENYL)SULFONYL](3-PICOLYL) HETNAM 2 CGS AMINO]-3-METHYLBUTANAMIDE HYDROCHLORIDE HETSYN CGS CGS-27023A FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 6(CA 2+) FORMUL 8 CGS 2(C18 H23 N3 O5 S) FORMUL 15 HOH *334(H2 O) HELIX 1 1 ASN A 27 ASN A 44 1 18 HELIX 2 2 LEU A 113 LEU A 125 1 13 HELIX 3 3 SER A 152 GLY A 164 1 13 HELIX 4 4 ASN B 27 ASN B 44 1 18 HELIX 5 5 LEU B 113 LEU B 125 1 13 HELIX 6 6 SER B 152 GLY B 164 1 13 SHEET 1 A 5 LYS A 49 LYS A 52 0 SHEET 2 A 5 TYR A 14 ILE A 19 1 N ILE A 15 O LYS A 49 SHEET 3 A 5 ILE A 60 ALA A 65 1 N ILE A 60 O THR A 16 SHEET 4 A 5 ALA A 96 ASP A 99 1 N ALA A 96 O LEU A 61 SHEET 5 A 5 ALA A 83 ALA A 85 -1 O HIS A 84 N HIS A 97 SHEET 1 B 2 TRP A 104 THR A 105 0 SHEET 2 B 2 THR A 111 ASN A 112 1 O THR A 111 N THR A 105 SHEET 1 C 5 LYS B 49 LYS B 52 0 SHEET 2 C 5 TYR B 14 ILE B 19 1 N ILE B 15 O LYS B 49 SHEET 3 C 5 ILE B 60 ALA B 65 1 N ILE B 60 O THR B 16 SHEET 4 C 5 ALA B 96 ASP B 99 1 O ALA B 96 N VAL B 63 SHEET 5 C 5 ALA B 83 ALA B 85 -1 O HIS B 84 N HIS B 97 SHEET 1 D 2 TRP B 104 THR B 105 0 SHEET 2 D 2 THR B 111 ASN B 112 1 O THR B 111 N THR B 105 LINK OD2 ASP A 25 CA CA A 261 1555 1555 2.33 LINK OD1 ASP A 25 CA CA A 261 1555 1555 3.30 LINK O ASP A 59 CA CA A 260 1555 1555 2.44 LINK NE2 HIS A 69 ZN ZN A 258 1555 1555 1.94 LINK OD1 ASP A 71 ZN ZN A 258 1555 1555 1.86 LINK OD2 ASP A 76 CA CA A 259 1555 1555 2.37 LINK O GLY A 77 CA CA A 259 1555 1555 2.27 LINK O GLY A 79 CA CA A 259 1555 1555 2.32 LINK O ILE A 81 CA CA A 259 1555 1555 2.32 LINK NE2 HIS A 84 ZN ZN A 258 1555 1555 2.14 LINK O GLY A 91 CA CA A 260 1555 1555 2.46 LINK O GLY A 93 CA CA A 260 1555 1555 2.38 LINK OD1 ASP A 95 CA CA A 260 1555 1555 2.53 LINK ND1 HIS A 97 ZN ZN A 258 1555 1555 1.99 LINK OD2 ASP A 99 CA CA A 259 1555 1555 2.34 LINK OE1 GLU A 100 CA CA A 261 1555 1555 2.49 LINK O GLU A 100 CA CA A 261 1555 1555 2.34 LINK OE2 GLU A 102 CA CA A 259 1555 1555 2.35 LINK O GLU A 102 CA CA A 261 1555 1555 2.55 LINK NE2 HIS A 119 ZN ZN A 257 1555 1555 2.21 LINK NE2 HIS A 123 ZN ZN A 257 1555 1555 2.18 LINK NE2 HIS A 129 ZN ZN A 257 1555 1555 2.15 LINK ZN ZN A 257 O48 CGS A 998 1555 1555 2.37 LINK ZN ZN A 257 O47 CGS A 998 1555 1555 2.08 LINK CA CA A 260 O HOH A 555 1555 1555 2.85 LINK CA CA A 260 O HOH A 857 1555 1555 2.48 LINK CA CA A 261 O HOH A 722 1555 1555 2.54 LINK CA CA A 261 O HOH A 855 1555 1555 3.33 LINK OD2 ASP B 25 CA CA B 261 1555 1555 2.29 LINK OD1 ASP B 25 CA CA B 261 1555 1555 3.14 LINK O ASP B 59 CA CA B 260 1555 1555 2.50 LINK NE2 HIS B 69 ZN ZN B 258 1555 1555 1.96 LINK OD1 ASP B 71 ZN ZN B 258 1555 1555 1.89 LINK OD2 ASP B 76 CA CA B 259 1555 1555 2.35 LINK O GLY B 77 CA CA B 259 1555 1555 2.13 LINK O GLY B 79 CA CA B 259 1555 1555 2.21 LINK O ILE B 81 CA CA B 259 1555 1555 2.45 LINK NE2 HIS B 84 ZN ZN B 258 1555 1555 2.10 LINK O GLY B 91 CA CA B 260 1555 1555 2.38 LINK O GLY B 93 CA CA B 260 1555 1555 2.33 LINK OD1 ASP B 95 CA CA B 260 1555 1555 2.62 LINK ND1 HIS B 97 ZN ZN B 258 1555 1555 2.03 LINK OD2 ASP B 99 CA CA B 259 1555 1555 2.40 LINK O GLU B 100 CA CA B 261 1555 1555 2.41 LINK OE1 GLU B 100 CA CA B 261 1555 1555 2.60 LINK OE2 GLU B 102 CA CA B 259 1555 1555 2.23 LINK O GLU B 102 CA CA B 261 1555 1555 2.56 LINK NE2 HIS B 119 ZN ZN B 257 1555 1555 2.21 LINK NE2 HIS B 123 ZN ZN B 257 1555 1555 2.18 LINK NE2 HIS B 129 ZN ZN B 257 1555 1555 2.15 LINK ZN ZN B 257 O47 CGS B 999 1555 1555 2.08 LINK ZN ZN B 257 O48 CGS B 999 1555 1555 2.34 LINK CA CA B 260 O HOH B 572 1555 1555 3.03 LINK CA CA B 260 O HOH B 863 1555 1555 2.58 LINK CA CA B 261 O HOH B 851 1555 1555 2.62 SITE 1 AC1 4 HIS A 119 HIS A 123 HIS A 129 CGS A 998 SITE 1 AC2 4 HIS A 69 ASP A 71 HIS A 84 HIS A 97 SITE 1 AC3 6 ASP A 76 GLY A 77 GLY A 79 ILE A 81 SITE 2 AC3 6 ASP A 99 GLU A 102 SITE 1 AC4 6 ASP A 59 GLY A 91 GLY A 93 ASP A 95 SITE 2 AC4 6 HOH A 555 HOH A 857 SITE 1 AC5 4 ASP A 25 GLU A 100 GLU A 102 HOH A 722 SITE 1 AC6 4 HIS B 119 HIS B 123 HIS B 129 CGS B 999 SITE 1 AC7 4 HIS B 69 ASP B 71 HIS B 84 HIS B 97 SITE 1 AC8 6 ASP B 76 GLY B 77 GLY B 79 ILE B 81 SITE 2 AC8 6 ASP B 99 GLU B 102 SITE 1 AC9 6 ASP B 59 GLY B 91 GLY B 93 ASP B 95 SITE 2 AC9 6 HOH B 572 HOH B 863 SITE 1 BC1 4 ASP B 25 GLU B 100 GLU B 102 HOH B 851 SITE 1 BC2 12 GLY A 80 ILE A 81 LEU A 82 ALA A 83 SITE 2 BC2 12 THR A 116 HIS A 119 GLU A 120 HIS A 123 SITE 3 BC2 12 HIS A 129 PRO A 139 ZN A 257 HOH A 603 SITE 1 BC3 12 GLY B 80 ILE B 81 LEU B 82 ALA B 83 SITE 2 BC3 12 THR B 116 HIS B 119 GLU B 120 HIS B 123 SITE 3 BC3 12 HIS B 129 PRO B 139 ZN B 257 HOH B 730 CRYST1 67.400 87.200 169.200 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014837 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005910 0.00000