HEADER HYDROLASE 09-JUL-01 1JJT TITLE IMP-1 METALLO BETA-LACTAMASE FROM PSEUDOMONAS AERUGINOSA IN COMPLEX TITLE 2 WITH A BIARYL SUCCINIC ACID INHIBITOR (1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMP-1 METALLO BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: METALLO-BETA-LACTAMASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PLEASE NOTE THAT THE PROTEIN CONTAINS POSTRANSLATIONAL COMPND 8 MODIFICATION: ATOM CG OF ASN 26 IS BOUND TO ATOM N OF GLY 27. THIS COMPND 9 ACCOUNTS FOR MISSING ATOMS LISTED IN REMARK 470 AND DISTORTED COMPND 10 GEOMETRY REPORTED FOR THESE RESIDUES. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLO-BETA-LACTAMASE INHIBITOR, SUCCINIC ACID INHIBITOR, IMP-1 KEYWDS 2 METALLO-BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.M.D.FITZGERALD,N.SHARMA REVDAT 6 03-APR-24 1JJT 1 REMARK LINK REVDAT 5 13-JUL-11 1JJT 1 VERSN REVDAT 4 24-FEB-09 1JJT 1 VERSN REVDAT 3 01-APR-03 1JJT 1 JRNL REVDAT 2 08-AUG-01 1JJT 1 JRNL REVDAT 1 25-JUL-01 1JJT 0 JRNL AUTH J.H.TONEY,G.G.HAMMOND,P.M.FITZGERALD,N.SHARMA,J.M.BALKOVEC, JRNL AUTH 2 G.P.ROUEN,S.H.OLSON,M.L.HAMMOND,M.L.GREENLEE,Y.D.GAO JRNL TITL SUCCINIC ACIDS AS POTENT INHIBITORS OF PLASMID-BORNE IMP-1 JRNL TITL 2 METALLO-BETA-LACTAMASE. JRNL REF J.BIOL.CHEM. V. 276 31913 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11390410 JRNL DOI 10.1074/JBC.M104742200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.199 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1818 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 35190 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.175 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 1482 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 28162 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 454 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3965.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 15875 REMARK 3 NUMBER OF RESTRAINTS : 14586 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 ANGLE DISTANCES (A) : 0.023 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.047 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.324 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.031 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.039 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.015 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.082 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: SHEXL 97 SWAT PARAMETER REFINEMENT REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : X-GEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37199 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.315 REMARK 200 R MERGE (I) : 0.07660 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8380 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.33 REMARK 200 R MERGE FOR SHELL (I) : 0.27360 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.417 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMEN REMARK 200 SOFTWARE USED: MERLOT REMARK 200 STARTING MODEL: SAME PROTEIN IN A DIFFERENT SPACE GROUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MONOMETHYL ETHER 550, ZINC REMARK 280 ACETATE, MES PH 6.7-7.1, 310 K, PH 6.9, VAPOR DIFFUSION, HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.59000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -259.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 60.24331 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 22.59000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.46639 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 223 REMARK 465 SER A 224 REMARK 465 LYS A 225 REMARK 465 PRO A 226 REMARK 465 SER A 227 REMARK 465 ASN A 228 REMARK 465 ALA B 1 REMARK 465 LYS B 222 REMARK 465 PRO B 223 REMARK 465 SER B 224 REMARK 465 LYS B 225 REMARK 465 PRO B 226 REMARK 465 SER B 227 REMARK 465 ASN B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 CD - NE - CZ ANGL. DEV. = 54.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 -132.46 37.89 REMARK 500 ASN A 41 -107.07 54.54 REMARK 500 ASP A 48 150.69 69.10 REMARK 500 PRO A 50 173.37 -53.17 REMARK 500 LYS A 129 -40.44 -133.41 REMARK 500 ASP A 202 -164.74 -115.93 REMARK 500 ASN B 26 -118.08 40.50 REMARK 500 ASN B 41 -120.91 53.33 REMARK 500 ASP B 48 146.42 69.48 REMARK 500 PRO B 50 172.52 -56.76 REMARK 500 LYS B 129 -36.73 -134.55 REMARK 500 ASP B 202 -163.87 -105.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 261 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 34 NE2 REMARK 620 2 GLU A 199 OE1 111.8 REMARK 620 3 GLU A 199 OE2 86.8 57.5 REMARK 620 4 ACT A 260 O 85.2 126.2 74.1 REMARK 620 5 ACT A 260 OXT 136.9 110.4 108.7 62.5 REMARK 620 6 HOH A1016 O 101.8 96.6 153.8 130.8 82.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 251 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 NE2 REMARK 620 2 HIS A 79 ND1 102.5 REMARK 620 3 HIS A 139 NE2 103.1 107.1 REMARK 620 4 BDS A 250 O3 117.7 111.7 113.5 REMARK 620 5 BDS A 250 O4 169.8 79.8 85.5 52.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 252 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 81 OD2 REMARK 620 2 CYS A 158 SG 105.4 REMARK 620 3 HIS A 197 NE2 86.8 106.6 REMARK 620 4 BDS A 250 O3 89.3 111.5 141.3 REMARK 620 5 BDS A 250 O17 153.3 101.2 83.8 82.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 261 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 34 NE2 REMARK 620 2 GLU B 199 OE1 88.8 REMARK 620 3 GLU B 199 OE2 107.1 56.6 REMARK 620 4 ACT B 260 O 85.2 74.6 128.6 REMARK 620 5 ACT B 260 OXT 133.2 112.3 119.5 63.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 251 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 77 NE2 REMARK 620 2 HIS B 79 ND1 100.9 REMARK 620 3 HIS B 139 NE2 103.6 110.2 REMARK 620 4 BDS B 250 O3 115.2 114.3 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 252 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 81 OD2 REMARK 620 2 CYS B 158 SG 111.6 REMARK 620 3 HIS B 197 NE2 88.0 108.6 REMARK 620 4 BDS B 250 O3 87.9 111.2 138.7 REMARK 620 5 BDS B 250 O17 150.8 97.6 82.3 81.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BDS A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BDS B 250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JJE RELATED DB: PDB REMARK 900 IMP-1 METALLO BETA-LACTAMASE IN COMPLEX WITH 2-BENZO[1,3]DIOXOL-5- REMARK 900 YLMETHYL-3-BENZYL-SUCCINIC ACID DBREF 1JJT A 1 228 UNP P52699 BLAB_SERMA 19 246 DBREF 1JJT B 1 228 UNP P52699 BLAB_SERMA 19 246 SEQRES 1 A 228 ALA GLU SER LEU PRO ASP LEU LYS ILE GLU LYS LEU ASP SEQRES 2 A 228 GLU GLY VAL TYR VAL HIS THR SER PHE GLU GLU VAL ASN SEQRES 3 A 228 GLY TRP GLY VAL VAL PRO LYS HIS GLY LEU VAL VAL LEU SEQRES 4 A 228 VAL ASN ALA GLU ALA TYR LEU ILE ASP THR PRO PHE THR SEQRES 5 A 228 ALA LYS ASP THR GLU LYS LEU VAL THR TRP PHE VAL GLU SEQRES 6 A 228 ARG GLY TYR LYS ILE LYS GLY SER ILE SER SER HIS PHE SEQRES 7 A 228 HIS SER ASP SER THR GLY GLY ILE GLU TRP LEU ASN SER SEQRES 8 A 228 ARG SER ILE PRO THR TYR ALA SER GLU LEU THR ASN GLU SEQRES 9 A 228 LEU LEU LYS LYS ASP GLY LYS VAL GLN ALA THR ASN SER SEQRES 10 A 228 PHE SER GLY VAL ASN TYR TRP LEU VAL LYS ASN LYS ILE SEQRES 11 A 228 GLU VAL PHE TYR PRO GLY PRO GLY HIS THR PRO ASP ASN SEQRES 12 A 228 VAL VAL VAL TRP LEU PRO GLU ARG LYS ILE LEU PHE GLY SEQRES 13 A 228 GLY CYS PHE ILE LYS PRO TYR GLY LEU GLY ASN LEU GLY SEQRES 14 A 228 ASP ALA ASN ILE GLU ALA TRP PRO LYS SER ALA LYS LEU SEQRES 15 A 228 LEU LYS SER LYS TYR GLY LYS ALA LYS LEU VAL VAL PRO SEQRES 16 A 228 SER HIS SER GLU VAL GLY ASP ALA SER LEU LEU LYS LEU SEQRES 17 A 228 THR LEU GLU GLN ALA VAL LYS GLY LEU ASN GLU SER LYS SEQRES 18 A 228 LYS PRO SER LYS PRO SER ASN SEQRES 1 B 228 ALA GLU SER LEU PRO ASP LEU LYS ILE GLU LYS LEU ASP SEQRES 2 B 228 GLU GLY VAL TYR VAL HIS THR SER PHE GLU GLU VAL ASN SEQRES 3 B 228 GLY TRP GLY VAL VAL PRO LYS HIS GLY LEU VAL VAL LEU SEQRES 4 B 228 VAL ASN ALA GLU ALA TYR LEU ILE ASP THR PRO PHE THR SEQRES 5 B 228 ALA LYS ASP THR GLU LYS LEU VAL THR TRP PHE VAL GLU SEQRES 6 B 228 ARG GLY TYR LYS ILE LYS GLY SER ILE SER SER HIS PHE SEQRES 7 B 228 HIS SER ASP SER THR GLY GLY ILE GLU TRP LEU ASN SER SEQRES 8 B 228 ARG SER ILE PRO THR TYR ALA SER GLU LEU THR ASN GLU SEQRES 9 B 228 LEU LEU LYS LYS ASP GLY LYS VAL GLN ALA THR ASN SER SEQRES 10 B 228 PHE SER GLY VAL ASN TYR TRP LEU VAL LYS ASN LYS ILE SEQRES 11 B 228 GLU VAL PHE TYR PRO GLY PRO GLY HIS THR PRO ASP ASN SEQRES 12 B 228 VAL VAL VAL TRP LEU PRO GLU ARG LYS ILE LEU PHE GLY SEQRES 13 B 228 GLY CYS PHE ILE LYS PRO TYR GLY LEU GLY ASN LEU GLY SEQRES 14 B 228 ASP ALA ASN ILE GLU ALA TRP PRO LYS SER ALA LYS LEU SEQRES 15 B 228 LEU LYS SER LYS TYR GLY LYS ALA LYS LEU VAL VAL PRO SEQRES 16 B 228 SER HIS SER GLU VAL GLY ASP ALA SER LEU LEU LYS LEU SEQRES 17 B 228 THR LEU GLU GLN ALA VAL LYS GLY LEU ASN GLU SER LYS SEQRES 18 B 228 LYS PRO SER LYS PRO SER ASN HET ZN A 251 1 HET ZN A 252 1 HET ACT A 260 4 HET ZN A 261 1 HET BDS A 250 28 HET ZN B 251 1 HET ZN B 252 1 HET ACT B 260 4 HET ZN B 261 1 HET BDS B 250 28 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM BDS 2,3-BIS-BENZO[1,3]DIOXOL-5-YLMETHYL-SUCCINIC ACID FORMUL 3 ZN 6(ZN 2+) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 BDS 2(C20 H18 O8) FORMUL 13 HOH *454(H2 O) HELIX 1 1 THR A 52 GLU A 65 1 14 HELIX 2 2 HIS A 79 GLY A 84 1 6 HELIX 3 3 GLY A 85 ARG A 92 1 8 HELIX 4 4 GLU A 100 ASP A 109 1 10 HELIX 5 5 CYS A 158 ILE A 160 5 3 HELIX 6 6 ALA A 175 TYR A 187 1 13 HELIX 7 7 ALA A 203 LYS A 222 1 20 HELIX 8 8 THR B 52 GLU B 65 1 14 HELIX 9 9 HIS B 79 GLY B 84 1 6 HELIX 10 10 GLY B 85 SER B 91 1 7 HELIX 11 11 GLU B 100 ASP B 109 1 10 HELIX 12 12 CYS B 158 ILE B 160 5 3 HELIX 13 13 ALA B 175 TYR B 187 1 13 HELIX 14 14 ALA B 203 LYS B 221 1 19 SHEET 1 A 7 LYS A 8 ASP A 13 0 SHEET 2 A 7 VAL A 16 GLU A 24 -1 O VAL A 16 N LEU A 12 SHEET 3 A 7 VAL A 30 VAL A 40 -1 N VAL A 31 O GLU A 23 SHEET 4 A 7 GLU A 43 ILE A 47 -1 O GLU A 43 N VAL A 40 SHEET 5 A 7 LYS A 69 ILE A 74 1 O LYS A 69 N ALA A 44 SHEET 6 A 7 THR A 96 SER A 99 1 N TYR A 97 O SER A 73 SHEET 7 A 7 ASN A 116 PHE A 118 1 N ASN A 116 O THR A 96 SHEET 1 B 5 TRP A 124 VAL A 126 0 SHEET 2 B 5 ILE A 130 PHE A 133 -1 N ILE A 130 O VAL A 126 SHEET 3 B 5 VAL A 145 LEU A 148 -1 O VAL A 145 N PHE A 133 SHEET 4 B 5 ILE A 153 GLY A 157 -1 O ILE A 153 N LEU A 148 SHEET 5 B 5 LEU A 192 PRO A 195 1 O LEU A 192 N LEU A 154 SHEET 1 C 7 LYS B 8 ASP B 13 0 SHEET 2 C 7 VAL B 16 GLU B 24 -1 O VAL B 16 N LEU B 12 SHEET 3 C 7 VAL B 30 VAL B 40 -1 N VAL B 31 O GLU B 23 SHEET 4 C 7 GLU B 43 ILE B 47 -1 N GLU B 43 O VAL B 40 SHEET 5 C 7 LYS B 69 ILE B 74 1 O LYS B 69 N ALA B 44 SHEET 6 C 7 THR B 96 SER B 99 1 N TYR B 97 O SER B 73 SHEET 7 C 7 ASN B 116 PHE B 118 1 N ASN B 116 O THR B 96 SHEET 1 D 5 ASN B 122 VAL B 126 0 SHEET 2 D 5 ILE B 130 PHE B 133 -1 N ILE B 130 O VAL B 126 SHEET 3 D 5 VAL B 145 LEU B 148 -1 N VAL B 145 O PHE B 133 SHEET 4 D 5 ILE B 153 GLY B 157 -1 O ILE B 153 N LEU B 148 SHEET 5 D 5 LEU B 192 PRO B 195 1 O LEU B 192 N LEU B 154 LINK CG ASN A 26 N GLY A 27 1555 1555 1.33 LINK CG ASN B 26 N GLY B 27 1555 1555 1.33 LINK NE2 HIS A 34 ZN ZN A 261 1555 1555 1.99 LINK NE2 HIS A 77 ZN ZN A 251 1555 1555 2.11 LINK ND1 HIS A 79 ZN ZN A 251 1555 1555 2.04 LINK OD2 ASP A 81 ZN ZN A 252 1555 1555 2.02 LINK NE2 HIS A 139 ZN ZN A 251 1555 1555 1.92 LINK SG CYS A 158 ZN ZN A 252 1555 1555 2.32 LINK NE2 HIS A 197 ZN ZN A 252 1555 1555 2.06 LINK OE1 GLU A 199 ZN ZN A 261 1555 1555 1.97 LINK OE2 GLU A 199 ZN ZN A 261 1555 1555 2.52 LINK O3 BDS A 250 ZN ZN A 251 1555 1555 2.06 LINK O4 BDS A 250 ZN ZN A 251 1555 1555 2.70 LINK O3 BDS A 250 ZN ZN A 252 1555 1555 2.13 LINK O17 BDS A 250 ZN ZN A 252 1555 1555 2.43 LINK O ACT A 260 ZN ZN A 261 1555 1555 1.77 LINK OXT ACT A 260 ZN ZN A 261 1555 1555 2.33 LINK ZN ZN A 261 O HOH A1016 1555 1555 2.03 LINK NE2 HIS B 34 ZN ZN B 261 1555 1555 2.00 LINK NE2 HIS B 77 ZN ZN B 251 1555 1555 2.12 LINK ND1 HIS B 79 ZN ZN B 251 1555 1555 2.04 LINK OD2 ASP B 81 ZN ZN B 252 1555 1555 2.00 LINK NE2 HIS B 139 ZN ZN B 251 1555 1555 1.89 LINK SG CYS B 158 ZN ZN B 252 1555 1555 2.29 LINK NE2 HIS B 197 ZN ZN B 252 1555 1555 2.07 LINK OE1 GLU B 199 ZN ZN B 261 1555 1555 2.54 LINK OE2 GLU B 199 ZN ZN B 261 1555 1555 1.90 LINK O3 BDS B 250 ZN ZN B 251 1555 1555 2.05 LINK O3 BDS B 250 ZN ZN B 252 1555 1555 2.15 LINK O17 BDS B 250 ZN ZN B 252 1555 1555 2.49 LINK O ACT B 260 ZN ZN B 261 1555 1555 1.77 LINK OXT ACT B 260 ZN ZN B 261 1555 1555 2.31 SITE 1 AC1 5 HIS A 77 HIS A 79 HIS A 139 BDS A 250 SITE 2 AC1 5 ZN A 252 SITE 1 AC2 5 ASP A 81 CYS A 158 HIS A 197 BDS A 250 SITE 2 AC2 5 ZN A 251 SITE 1 AC3 5 LYS A 8 HIS A 34 GLU A 199 ZN A 261 SITE 2 AC3 5 HOH A1016 SITE 1 AC4 4 HIS A 34 GLU A 199 ACT A 260 HOH A1016 SITE 1 AC5 5 HIS B 77 HIS B 79 HIS B 139 BDS B 250 SITE 2 AC5 5 ZN B 252 SITE 1 AC6 5 ASP B 81 CYS B 158 HIS B 197 BDS B 250 SITE 2 AC6 5 ZN B 251 SITE 1 AC7 4 LYS B 8 HIS B 34 GLU B 199 ZN B 261 SITE 1 AC8 3 HIS B 34 GLU B 199 ACT B 260 SITE 1 AC9 15 VAL A 25 TRP A 28 PHE A 51 HIS A 77 SITE 2 AC9 15 HIS A 79 SER A 80 ASP A 81 HIS A 139 SITE 3 AC9 15 CYS A 158 LYS A 161 GLY A 166 ASN A 167 SITE 4 AC9 15 HIS A 197 ZN A 251 ZN A 252 SITE 1 BC1 16 HIS B 77 HIS B 79 SER B 80 ASP B 81 SITE 2 BC1 16 HIS B 139 CYS B 158 LYS B 161 GLY B 166 SITE 3 BC1 16 ASN B 167 HIS B 197 ZN B 251 ZN B 252 SITE 4 BC1 16 HOH B1221 HOH B1238 HOH B1266 HOH B1428 CRYST1 71.800 45.180 64.510 90.00 100.32 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013928 0.000000 0.002536 0.00000 SCALE2 0.000000 0.022134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015756 0.00000