data_1JKO # _entry.id 1JKO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JKO pdb_00001jko 10.2210/pdb1jko/pdb NDB PD0234 ? ? RCSB RCSB013882 ? ? WWPDB D_1000013882 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1HCR ;Native wild-type Hin recombinase DNA-binding domain bound to underivatized hixL half-site. ; unspecified PDB 1IJW 'FORM1 BR18 DERIVATIVE' unspecified PDB 1JJ6 'FORM1 I5 DERIVATIVE' unspecified PDB 1JJ8 'FORM2 I4 DERIVATIVE' unspecified PDB 1JKP 'FORM1 T11G MUTANT' unspecified PDB 1JKQ 'FORM1 G9T MUTANT' unspecified PDB 1JKR 'FORM1 T11C MUTANT' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JKO _pdbx_database_status.recvd_initial_deposition_date 2001-07-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chiu, T.K.' 1 'Sohn, C.' 2 'Johnson, R.C.' 3 'Dickerson, R.E.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Testing water-mediated DNA recognition by the Hin recombinase.' 'EMBO J.' 21 801 814 2002 EMJODG UK 0261-4189 0897 ? 11847127 10.1093/emboj/21.4.801 1 'How Hin Recombinase, FIS and Cations Bind DNA. Chapter 4. Water-Mediated Sequence-Specific Recognition by Hin Recombinase' Thesis ? 145 241 2001 ? ? ? ? ? ? ? 2 'Hin Recombinase Bound to DNA: The Origin of Specificity in Major and Minor Groove Interactions' Science 263 348 355 1994 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chiu, T.K.' 1 ? primary 'Sohn, C.' 2 ? primary 'Dickerson, R.E.' 3 ? primary 'Johnson, R.C.' 4 ? 1 'Chiu, T.K.' 5 ? 2 'Feng, J.A.' 6 ? 2 'Johnson, R.C.' 7 ? 2 'Dickerson, R.E.' 8 ? # _cell.entry_id 1JKO _cell.length_a 85.612 _cell.length_b 81.996 _cell.length_c 43.734 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JKO _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*GP*TP*AP*AP*GP*A)-3'" 4340.835 1 ? ? ? ? 2 polymer syn "5'-D(*AP*TP*CP*TP*TP*AP*CP*CP*AP*AP*AP*AP*AP*C)-3'" 4216.795 1 ? ? ? ? 3 polymer syn 'DNA-INVERTASE HIN' 6047.051 1 ? ? 'RESIDUES 139 TO 190' ? 4 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 5 water nat water 18.015 13 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Hin Recombinase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DT)(DT)(DT)(DT)(DG)(DG)(DT)(DA)(DA)(DG)(DA)' TGTTTTTGGTAAGA A ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DC)(DT)(DT)(DA)(DC)(DC)(DA)(DA)(DA)(DA)(DA)(DC)' ATCTTACCAAAAAC B ? 3 'polypeptide(L)' no no GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DT n 1 11 DA n 1 12 DA n 1 13 DG n 1 14 DA n 2 1 DA n 2 2 DT n 2 3 DC n 2 4 DT n 2 5 DT n 2 6 DA n 2 7 DC n 2 8 DC n 2 9 DA n 2 10 DA n 2 11 DA n 2 12 DA n 2 13 DA n 2 14 DC n 3 1 GLY n 3 2 ARG n 3 3 PRO n 3 4 ARG n 3 5 ALA n 3 6 ILE n 3 7 ASN n 3 8 LYS n 3 9 HIS n 3 10 GLU n 3 11 GLN n 3 12 GLU n 3 13 GLN n 3 14 ILE n 3 15 SER n 3 16 ARG n 3 17 LEU n 3 18 LEU n 3 19 GLU n 3 20 LYS n 3 21 GLY n 3 22 HIS n 3 23 PRO n 3 24 ARG n 3 25 GLN n 3 26 GLN n 3 27 LEU n 3 28 ALA n 3 29 ILE n 3 30 ILE n 3 31 PHE n 3 32 GLY n 3 33 ILE n 3 34 GLY n 3 35 VAL n 3 36 SER n 3 37 THR n 3 38 LEU n 3 39 TYR n 3 40 ARG n 3 41 TYR n 3 42 PHE n 3 43 PRO n 3 44 ALA n 3 45 SER n 3 46 SER n 3 47 ILE n 3 48 LYS n 3 49 LYS n 3 50 ARG n 3 51 MET n 3 52 ASN n # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SYNTHETIC PEPTIDE' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP HIN_SALTY 3 GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN 139 P03013 ? 2 PDB 1JKO 1 ? ? 1JKO ? 3 PDB 1JKO 2 ? ? 1JKO ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JKO C 1 ? 52 ? P03013 139 ? 190 ? 139 190 2 2 1JKO A 1 ? 14 ? 1JKO 2 ? 15 ? 2 15 3 3 1JKO B 1 ? 14 ? 1JKO 16 ? 29 ? 16 29 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1JKO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_percent_sol 51.74 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_details ;HANGING DROP VAPOR DIFFUSION AT 4C, WITH INITIAL CONCENTRATION IN DROP OF 0.10 MM DNA, 0.06 MM HIN, 10 MM HEPES (PH 7.5), 5 MM CACL2, 13 MM NACL, 2.8% V/V PEG400, AND 1.56 MM NA CACODYLATE. RESERVOIR SOLUTION CONTAINS 100 MM HEPES (PH 7.5), 50 MM CACL2, AND 25% PEG400. CONCENTRATION OF PEG400 IN RESERVOIR SOLUTION WAS INCREASED IN 5% INCREMENTS TO 35%., pH 7.50, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 DNA ? ? ? 1 2 1 HIN ? ? ? 1 3 1 HEPES ? ? ? 1 4 1 CaCl2 ? ? ? 1 5 1 NaCl ? ? ? 1 6 1 'PEG 400' ? ? ? 1 7 1 'sodium cacodylate' ? ? ? 1 8 2 HEPES ? ? ? 1 9 2 CaCl2 ? ? ? 1 10 2 'PEG 400' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 1997-09-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'MOLECULAR REPLACEMENT WITH 1IJW HAVING THE PROPER DNA SUBSTITUTIONS AS THE STARTING MODEL.' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.100 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength 1.100 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1JKO _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 14.00 _reflns.d_resolution_high 2.24 _reflns.number_obs 6235 _reflns.number_all ? _reflns.percent_possible_obs 81.27 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0680000 _reflns.pdbx_netI_over_sigmaI 19.70 _reflns.B_iso_Wilson_estimate 67.00 _reflns.pdbx_redundancy 15.00 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.24 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_all 50.80 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.2150000 _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 1.49 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JKO _refine.ls_number_reflns_obs 6235 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 14.00 _refine.ls_d_res_high 2.24 _refine.ls_percent_reflns_obs 81.27 _refine.ls_R_factor_obs 0.2439000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2439000 _refine.ls_R_factor_R_free 0.3057000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.21 _refine.ls_number_reflns_R_free 630 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 64.00 _refine.aniso_B[1][1] 19.38 _refine.aniso_B[2][2] 2.14 _refine.aniso_B[3][3] -21.52 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol 0.40 _refine.solvent_model_param_bsol 100.00 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1IJW _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ANISOTROPIC_FIXED_ISOTROPIC _refine.pdbx_stereochemistry_target_values MLF _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF 10000.00 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1JKO _refine_analyze.Luzzati_coordinate_error_obs 0.47 _refine_analyze.Luzzati_sigma_a_obs 0.74 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.73 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 323 _refine_hist.pdbx_number_atoms_nucleic_acid 568 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 912 _refine_hist.d_res_high 2.24 _refine_hist.d_res_low 14.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.251 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 19.443 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.489 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 4.09 4.000 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 6.22 6.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 6.10 6.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 9.24 7.000 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.24 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work 432 _refine_ls_shell.R_factor_R_work 0.4660000 _refine_ls_shell.percent_reflns_obs 50.80 _refine_ls_shell.R_factor_R_free 0.4314000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.50 _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1JKO _struct.title 'Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JKO _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'WATER-MEDIATED RECOGNITION, PROTEIN-DNA COMPLEX, HIN RECOMBINASE, A10G MUTANT, DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS C 9 ? LYS C 20 ? HIS C 147 LYS C 158 1 ? 12 HELX_P HELX_P2 2 PRO C 23 ? ILE C 30 ? PRO C 161 ILE C 168 1 ? 8 HELX_P HELX_P3 3 GLY C 34 ? PHE C 42 ? GLY C 172 PHE C 180 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 13 N1 ? ? A DT 4 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 4 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 5 B DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 5 B DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 6 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 6 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 7 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 7 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 8 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 8 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 9 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 9 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 9 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 10 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 10 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 10 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 11 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 11 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 12 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 12 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 13 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 13 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 14 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 14 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 14 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id TRS _struct_site.pdbx_auth_seq_id 204 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE TRS A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DG A 8 ? DG A 9 . ? 1_555 ? 2 AC1 3 DG A 9 ? DG A 10 . ? 1_555 ? 3 AC1 3 DA B 10 ? DA B 25 . ? 1_555 ? # _database_PDB_matrix.entry_id 1JKO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JKO _atom_sites.fract_transf_matrix[1][1] 0.011681 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012196 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022865 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 2 2 DT T A . n A 1 2 DG 2 3 3 DG G A . n A 1 3 DT 3 4 4 DT T A . n A 1 4 DT 4 5 5 DT T A . n A 1 5 DT 5 6 6 DT T A . n A 1 6 DT 6 7 7 DT T A . n A 1 7 DT 7 8 8 DT T A . n A 1 8 DG 8 9 9 DG G A . n A 1 9 DG 9 10 10 DG G A . n A 1 10 DT 10 11 11 DT T A . n A 1 11 DA 11 12 12 DA A A . n A 1 12 DA 12 13 13 DA A A . n A 1 13 DG 13 14 14 DG G A . n A 1 14 DA 14 15 15 DA A A . n B 2 1 DA 1 16 16 DA A B . n B 2 2 DT 2 17 17 DT T B . n B 2 3 DC 3 18 18 DC C B . n B 2 4 DT 4 19 19 DT T B . n B 2 5 DT 5 20 20 DT T B . n B 2 6 DA 6 21 21 DA A B . n B 2 7 DC 7 22 22 DC C B . n B 2 8 DC 8 23 23 DC C B . n B 2 9 DA 9 24 24 DA A B . n B 2 10 DA 10 25 25 DA A B . n B 2 11 DA 11 26 26 DA A B . n B 2 12 DA 12 27 27 DA A B . n B 2 13 DA 13 28 28 DA A B . n B 2 14 DC 14 29 29 DC C B . n C 3 1 GLY 1 139 139 GLY GLY C . n C 3 2 ARG 2 140 140 ARG ARG C . n C 3 3 PRO 3 141 141 PRO PRO C . n C 3 4 ARG 4 142 142 ARG ARG C . n C 3 5 ALA 5 143 143 ALA ALA C . n C 3 6 ILE 6 144 144 ILE ILE C . n C 3 7 ASN 7 145 145 ASN ASN C . n C 3 8 LYS 8 146 146 LYS LYS C . n C 3 9 HIS 9 147 147 HIS HIS C . n C 3 10 GLU 10 148 148 GLU GLU C . n C 3 11 GLN 11 149 149 GLN GLN C . n C 3 12 GLU 12 150 150 GLU GLU C . n C 3 13 GLN 13 151 151 GLN GLN C . n C 3 14 ILE 14 152 152 ILE ILE C . n C 3 15 SER 15 153 153 SER SER C . n C 3 16 ARG 16 154 154 ARG ARG C . n C 3 17 LEU 17 155 155 LEU LEU C . n C 3 18 LEU 18 156 156 LEU LEU C . n C 3 19 GLU 19 157 157 GLU GLU C . n C 3 20 LYS 20 158 158 LYS LYS C . n C 3 21 GLY 21 159 159 GLY GLY C . n C 3 22 HIS 22 160 160 HIS HIS C . n C 3 23 PRO 23 161 161 PRO PRO C . n C 3 24 ARG 24 162 162 ARG ARG C . n C 3 25 GLN 25 163 163 GLN GLN C . n C 3 26 GLN 26 164 164 GLN GLN C . n C 3 27 LEU 27 165 165 LEU LEU C . n C 3 28 ALA 28 166 166 ALA ALA C . n C 3 29 ILE 29 167 167 ILE ILE C . n C 3 30 ILE 30 168 168 ILE ILE C . n C 3 31 PHE 31 169 169 PHE PHE C . n C 3 32 GLY 32 170 170 GLY GLY C . n C 3 33 ILE 33 171 171 ILE ILE C . n C 3 34 GLY 34 172 172 GLY GLY C . n C 3 35 VAL 35 173 173 VAL VAL C . n C 3 36 SER 36 174 174 SER SER C . n C 3 37 THR 37 175 175 THR THR C . n C 3 38 LEU 38 176 176 LEU LEU C . n C 3 39 TYR 39 177 177 TYR TYR C . n C 3 40 ARG 40 178 178 ARG ARG C . n C 3 41 TYR 41 179 179 TYR TYR C . n C 3 42 PHE 42 180 180 PHE PHE C . n C 3 43 PRO 43 181 181 PRO PRO C . n C 3 44 ALA 44 182 182 ALA ALA C . n C 3 45 SER 45 183 183 SER SER C . n C 3 46 SER 46 184 184 SER SER C . n C 3 47 ILE 47 185 ? ? ? C . n C 3 48 LYS 48 186 ? ? ? C . n C 3 49 LYS 49 187 ? ? ? C . n C 3 50 ARG 50 188 ? ? ? C . n C 3 51 MET 51 189 ? ? ? C . n C 3 52 ASN 52 190 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TRS 1 204 204 TRS TRS A . E 5 HOH 1 202 202 HOH HOH A . E 5 HOH 2 203 203 HOH HOH A . E 5 HOH 3 206 206 HOH HOH A . E 5 HOH 4 207 207 HOH HOH A . E 5 HOH 5 209 209 HOH HOH A . E 5 HOH 6 210 210 HOH HOH A . F 5 HOH 1 201 201 HOH HOH B . F 5 HOH 2 208 208 HOH HOH B . F 5 HOH 3 211 211 HOH HOH B . G 5 HOH 1 205 205 HOH HOH C . G 5 HOH 2 212 212 HOH HOH C . G 5 HOH 3 213 213 HOH HOH C . G 5 HOH 4 214 214 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-02-22 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO C 181 ? ? -46.91 153.76 2 1 SER C 183 ? ? -96.57 34.11 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 15 ? ? 0.072 'SIDE CHAIN' 2 1 DA B 27 ? ? 0.055 'SIDE CHAIN' 3 1 DA B 28 ? ? 0.067 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LYS 146 ? CG ? C LYS 8 CG 2 1 Y 1 C LYS 146 ? CD ? C LYS 8 CD 3 1 Y 1 C LYS 146 ? CE ? C LYS 8 CE 4 1 Y 1 C LYS 146 ? NZ ? C LYS 8 NZ 5 1 Y 1 C HIS 147 ? CB ? C HIS 9 CB 6 1 Y 1 C HIS 147 ? CG ? C HIS 9 CG 7 1 Y 1 C HIS 147 ? ND1 ? C HIS 9 ND1 8 1 Y 1 C HIS 147 ? CD2 ? C HIS 9 CD2 9 1 Y 1 C HIS 147 ? CE1 ? C HIS 9 CE1 10 1 Y 1 C HIS 147 ? NE2 ? C HIS 9 NE2 11 1 Y 1 C GLU 148 ? CG ? C GLU 10 CG 12 1 Y 1 C GLU 148 ? CD ? C GLU 10 CD 13 1 Y 1 C GLU 148 ? OE1 ? C GLU 10 OE1 14 1 Y 1 C GLU 148 ? OE2 ? C GLU 10 OE2 15 1 Y 1 C GLN 149 ? CB ? C GLN 11 CB 16 1 Y 1 C GLN 149 ? CG ? C GLN 11 CG 17 1 Y 1 C GLN 149 ? CD ? C GLN 11 CD 18 1 Y 1 C GLN 149 ? OE1 ? C GLN 11 OE1 19 1 Y 1 C GLN 149 ? NE2 ? C GLN 11 NE2 20 1 Y 1 C GLU 150 ? CB ? C GLU 12 CB 21 1 Y 1 C GLU 150 ? CG ? C GLU 12 CG 22 1 Y 1 C GLU 150 ? CD ? C GLU 12 CD 23 1 Y 1 C GLU 150 ? OE1 ? C GLU 12 OE1 24 1 Y 1 C GLU 150 ? OE2 ? C GLU 12 OE2 25 1 Y 1 C ARG 154 ? CB ? C ARG 16 CB 26 1 Y 1 C ARG 154 ? CG ? C ARG 16 CG 27 1 Y 1 C ARG 154 ? CD ? C ARG 16 CD 28 1 Y 1 C ARG 154 ? NE ? C ARG 16 NE 29 1 Y 1 C ARG 154 ? CZ ? C ARG 16 CZ 30 1 Y 1 C ARG 154 ? NH1 ? C ARG 16 NH1 31 1 Y 1 C ARG 154 ? NH2 ? C ARG 16 NH2 32 1 Y 1 C GLU 157 ? CB ? C GLU 19 CB 33 1 Y 1 C GLU 157 ? CG ? C GLU 19 CG 34 1 Y 1 C GLU 157 ? CD ? C GLU 19 CD 35 1 Y 1 C GLU 157 ? OE1 ? C GLU 19 OE1 36 1 Y 1 C GLU 157 ? OE2 ? C GLU 19 OE2 37 1 Y 1 C LYS 158 ? CG ? C LYS 20 CG 38 1 Y 1 C LYS 158 ? CD ? C LYS 20 CD 39 1 Y 1 C LYS 158 ? CE ? C LYS 20 CE 40 1 Y 1 C LYS 158 ? NZ ? C LYS 20 NZ 41 1 Y 1 C GLN 163 ? CG ? C GLN 25 CG 42 1 Y 1 C GLN 163 ? CD ? C GLN 25 CD 43 1 Y 1 C GLN 163 ? OE1 ? C GLN 25 OE1 44 1 Y 1 C GLN 163 ? NE2 ? C GLN 25 NE2 45 1 Y 1 C GLN 164 ? CB ? C GLN 26 CB 46 1 Y 1 C GLN 164 ? CG ? C GLN 26 CG 47 1 Y 1 C GLN 164 ? CD ? C GLN 26 CD 48 1 Y 1 C GLN 164 ? OE1 ? C GLN 26 OE1 49 1 Y 1 C GLN 164 ? NE2 ? C GLN 26 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C ILE 185 ? C ILE 47 2 1 Y 1 C LYS 186 ? C LYS 48 3 1 Y 1 C LYS 187 ? C LYS 49 4 1 Y 1 C ARG 188 ? C ARG 50 5 1 Y 1 C MET 189 ? C MET 51 6 1 Y 1 C ASN 190 ? C ASN 52 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 DA OP3 O N N 58 DA P P N N 59 DA OP1 O N N 60 DA OP2 O N N 61 DA "O5'" O N N 62 DA "C5'" C N N 63 DA "C4'" C N R 64 DA "O4'" O N N 65 DA "C3'" C N S 66 DA "O3'" O N N 67 DA "C2'" C N N 68 DA "C1'" C N R 69 DA N9 N Y N 70 DA C8 C Y N 71 DA N7 N Y N 72 DA C5 C Y N 73 DA C6 C Y N 74 DA N6 N N N 75 DA N1 N Y N 76 DA C2 C Y N 77 DA N3 N Y N 78 DA C4 C Y N 79 DA HOP3 H N N 80 DA HOP2 H N N 81 DA "H5'" H N N 82 DA "H5''" H N N 83 DA "H4'" H N N 84 DA "H3'" H N N 85 DA "HO3'" H N N 86 DA "H2'" H N N 87 DA "H2''" H N N 88 DA "H1'" H N N 89 DA H8 H N N 90 DA H61 H N N 91 DA H62 H N N 92 DA H2 H N N 93 DC OP3 O N N 94 DC P P N N 95 DC OP1 O N N 96 DC OP2 O N N 97 DC "O5'" O N N 98 DC "C5'" C N N 99 DC "C4'" C N R 100 DC "O4'" O N N 101 DC "C3'" C N S 102 DC "O3'" O N N 103 DC "C2'" C N N 104 DC "C1'" C N R 105 DC N1 N N N 106 DC C2 C N N 107 DC O2 O N N 108 DC N3 N N N 109 DC C4 C N N 110 DC N4 N N N 111 DC C5 C N N 112 DC C6 C N N 113 DC HOP3 H N N 114 DC HOP2 H N N 115 DC "H5'" H N N 116 DC "H5''" H N N 117 DC "H4'" H N N 118 DC "H3'" H N N 119 DC "HO3'" H N N 120 DC "H2'" H N N 121 DC "H2''" H N N 122 DC "H1'" H N N 123 DC H41 H N N 124 DC H42 H N N 125 DC H5 H N N 126 DC H6 H N N 127 DG OP3 O N N 128 DG P P N N 129 DG OP1 O N N 130 DG OP2 O N N 131 DG "O5'" O N N 132 DG "C5'" C N N 133 DG "C4'" C N R 134 DG "O4'" O N N 135 DG "C3'" C N S 136 DG "O3'" O N N 137 DG "C2'" C N N 138 DG "C1'" C N R 139 DG N9 N Y N 140 DG C8 C Y N 141 DG N7 N Y N 142 DG C5 C Y N 143 DG C6 C N N 144 DG O6 O N N 145 DG N1 N N N 146 DG C2 C N N 147 DG N2 N N N 148 DG N3 N N N 149 DG C4 C Y N 150 DG HOP3 H N N 151 DG HOP2 H N N 152 DG "H5'" H N N 153 DG "H5''" H N N 154 DG "H4'" H N N 155 DG "H3'" H N N 156 DG "HO3'" H N N 157 DG "H2'" H N N 158 DG "H2''" H N N 159 DG "H1'" H N N 160 DG H8 H N N 161 DG H1 H N N 162 DG H21 H N N 163 DG H22 H N N 164 DT OP3 O N N 165 DT P P N N 166 DT OP1 O N N 167 DT OP2 O N N 168 DT "O5'" O N N 169 DT "C5'" C N N 170 DT "C4'" C N R 171 DT "O4'" O N N 172 DT "C3'" C N S 173 DT "O3'" O N N 174 DT "C2'" C N N 175 DT "C1'" C N R 176 DT N1 N N N 177 DT C2 C N N 178 DT O2 O N N 179 DT N3 N N N 180 DT C4 C N N 181 DT O4 O N N 182 DT C5 C N N 183 DT C7 C N N 184 DT C6 C N N 185 DT HOP3 H N N 186 DT HOP2 H N N 187 DT "H5'" H N N 188 DT "H5''" H N N 189 DT "H4'" H N N 190 DT "H3'" H N N 191 DT "HO3'" H N N 192 DT "H2'" H N N 193 DT "H2''" H N N 194 DT "H1'" H N N 195 DT H3 H N N 196 DT H71 H N N 197 DT H72 H N N 198 DT H73 H N N 199 DT H6 H N N 200 GLN N N N N 201 GLN CA C N S 202 GLN C C N N 203 GLN O O N N 204 GLN CB C N N 205 GLN CG C N N 206 GLN CD C N N 207 GLN OE1 O N N 208 GLN NE2 N N N 209 GLN OXT O N N 210 GLN H H N N 211 GLN H2 H N N 212 GLN HA H N N 213 GLN HB2 H N N 214 GLN HB3 H N N 215 GLN HG2 H N N 216 GLN HG3 H N N 217 GLN HE21 H N N 218 GLN HE22 H N N 219 GLN HXT H N N 220 GLU N N N N 221 GLU CA C N S 222 GLU C C N N 223 GLU O O N N 224 GLU CB C N N 225 GLU CG C N N 226 GLU CD C N N 227 GLU OE1 O N N 228 GLU OE2 O N N 229 GLU OXT O N N 230 GLU H H N N 231 GLU H2 H N N 232 GLU HA H N N 233 GLU HB2 H N N 234 GLU HB3 H N N 235 GLU HG2 H N N 236 GLU HG3 H N N 237 GLU HE2 H N N 238 GLU HXT H N N 239 GLY N N N N 240 GLY CA C N N 241 GLY C C N N 242 GLY O O N N 243 GLY OXT O N N 244 GLY H H N N 245 GLY H2 H N N 246 GLY HA2 H N N 247 GLY HA3 H N N 248 GLY HXT H N N 249 HIS N N N N 250 HIS CA C N S 251 HIS C C N N 252 HIS O O N N 253 HIS CB C N N 254 HIS CG C Y N 255 HIS ND1 N Y N 256 HIS CD2 C Y N 257 HIS CE1 C Y N 258 HIS NE2 N Y N 259 HIS OXT O N N 260 HIS H H N N 261 HIS H2 H N N 262 HIS HA H N N 263 HIS HB2 H N N 264 HIS HB3 H N N 265 HIS HD1 H N N 266 HIS HD2 H N N 267 HIS HE1 H N N 268 HIS HE2 H N N 269 HIS HXT H N N 270 HOH O O N N 271 HOH H1 H N N 272 HOH H2 H N N 273 ILE N N N N 274 ILE CA C N S 275 ILE C C N N 276 ILE O O N N 277 ILE CB C N S 278 ILE CG1 C N N 279 ILE CG2 C N N 280 ILE CD1 C N N 281 ILE OXT O N N 282 ILE H H N N 283 ILE H2 H N N 284 ILE HA H N N 285 ILE HB H N N 286 ILE HG12 H N N 287 ILE HG13 H N N 288 ILE HG21 H N N 289 ILE HG22 H N N 290 ILE HG23 H N N 291 ILE HD11 H N N 292 ILE HD12 H N N 293 ILE HD13 H N N 294 ILE HXT H N N 295 LEU N N N N 296 LEU CA C N S 297 LEU C C N N 298 LEU O O N N 299 LEU CB C N N 300 LEU CG C N N 301 LEU CD1 C N N 302 LEU CD2 C N N 303 LEU OXT O N N 304 LEU H H N N 305 LEU H2 H N N 306 LEU HA H N N 307 LEU HB2 H N N 308 LEU HB3 H N N 309 LEU HG H N N 310 LEU HD11 H N N 311 LEU HD12 H N N 312 LEU HD13 H N N 313 LEU HD21 H N N 314 LEU HD22 H N N 315 LEU HD23 H N N 316 LEU HXT H N N 317 LYS N N N N 318 LYS CA C N S 319 LYS C C N N 320 LYS O O N N 321 LYS CB C N N 322 LYS CG C N N 323 LYS CD C N N 324 LYS CE C N N 325 LYS NZ N N N 326 LYS OXT O N N 327 LYS H H N N 328 LYS H2 H N N 329 LYS HA H N N 330 LYS HB2 H N N 331 LYS HB3 H N N 332 LYS HG2 H N N 333 LYS HG3 H N N 334 LYS HD2 H N N 335 LYS HD3 H N N 336 LYS HE2 H N N 337 LYS HE3 H N N 338 LYS HZ1 H N N 339 LYS HZ2 H N N 340 LYS HZ3 H N N 341 LYS HXT H N N 342 MET N N N N 343 MET CA C N S 344 MET C C N N 345 MET O O N N 346 MET CB C N N 347 MET CG C N N 348 MET SD S N N 349 MET CE C N N 350 MET OXT O N N 351 MET H H N N 352 MET H2 H N N 353 MET HA H N N 354 MET HB2 H N N 355 MET HB3 H N N 356 MET HG2 H N N 357 MET HG3 H N N 358 MET HE1 H N N 359 MET HE2 H N N 360 MET HE3 H N N 361 MET HXT H N N 362 PHE N N N N 363 PHE CA C N S 364 PHE C C N N 365 PHE O O N N 366 PHE CB C N N 367 PHE CG C Y N 368 PHE CD1 C Y N 369 PHE CD2 C Y N 370 PHE CE1 C Y N 371 PHE CE2 C Y N 372 PHE CZ C Y N 373 PHE OXT O N N 374 PHE H H N N 375 PHE H2 H N N 376 PHE HA H N N 377 PHE HB2 H N N 378 PHE HB3 H N N 379 PHE HD1 H N N 380 PHE HD2 H N N 381 PHE HE1 H N N 382 PHE HE2 H N N 383 PHE HZ H N N 384 PHE HXT H N N 385 PRO N N N N 386 PRO CA C N S 387 PRO C C N N 388 PRO O O N N 389 PRO CB C N N 390 PRO CG C N N 391 PRO CD C N N 392 PRO OXT O N N 393 PRO H H N N 394 PRO HA H N N 395 PRO HB2 H N N 396 PRO HB3 H N N 397 PRO HG2 H N N 398 PRO HG3 H N N 399 PRO HD2 H N N 400 PRO HD3 H N N 401 PRO HXT H N N 402 SER N N N N 403 SER CA C N S 404 SER C C N N 405 SER O O N N 406 SER CB C N N 407 SER OG O N N 408 SER OXT O N N 409 SER H H N N 410 SER H2 H N N 411 SER HA H N N 412 SER HB2 H N N 413 SER HB3 H N N 414 SER HG H N N 415 SER HXT H N N 416 THR N N N N 417 THR CA C N S 418 THR C C N N 419 THR O O N N 420 THR CB C N R 421 THR OG1 O N N 422 THR CG2 C N N 423 THR OXT O N N 424 THR H H N N 425 THR H2 H N N 426 THR HA H N N 427 THR HB H N N 428 THR HG1 H N N 429 THR HG21 H N N 430 THR HG22 H N N 431 THR HG23 H N N 432 THR HXT H N N 433 TRS C C N N 434 TRS C1 C N N 435 TRS C2 C N N 436 TRS C3 C N N 437 TRS N N N N 438 TRS O1 O N N 439 TRS O2 O N N 440 TRS O3 O N N 441 TRS H11 H N N 442 TRS H12 H N N 443 TRS H21 H N N 444 TRS H22 H N N 445 TRS H31 H N N 446 TRS H32 H N N 447 TRS HN1 H N N 448 TRS HN2 H N N 449 TRS HN3 H N N 450 TRS HO1 H N N 451 TRS HO2 H N N 452 TRS HO3 H N N 453 TYR N N N N 454 TYR CA C N S 455 TYR C C N N 456 TYR O O N N 457 TYR CB C N N 458 TYR CG C Y N 459 TYR CD1 C Y N 460 TYR CD2 C Y N 461 TYR CE1 C Y N 462 TYR CE2 C Y N 463 TYR CZ C Y N 464 TYR OH O N N 465 TYR OXT O N N 466 TYR H H N N 467 TYR H2 H N N 468 TYR HA H N N 469 TYR HB2 H N N 470 TYR HB3 H N N 471 TYR HD1 H N N 472 TYR HD2 H N N 473 TYR HE1 H N N 474 TYR HE2 H N N 475 TYR HH H N N 476 TYR HXT H N N 477 VAL N N N N 478 VAL CA C N S 479 VAL C C N N 480 VAL O O N N 481 VAL CB C N N 482 VAL CG1 C N N 483 VAL CG2 C N N 484 VAL OXT O N N 485 VAL H H N N 486 VAL H2 H N N 487 VAL HA H N N 488 VAL HB H N N 489 VAL HG11 H N N 490 VAL HG12 H N N 491 VAL HG13 H N N 492 VAL HG21 H N N 493 VAL HG22 H N N 494 VAL HG23 H N N 495 VAL HXT H N N 496 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 DA OP3 P sing N N 55 DA OP3 HOP3 sing N N 56 DA P OP1 doub N N 57 DA P OP2 sing N N 58 DA P "O5'" sing N N 59 DA OP2 HOP2 sing N N 60 DA "O5'" "C5'" sing N N 61 DA "C5'" "C4'" sing N N 62 DA "C5'" "H5'" sing N N 63 DA "C5'" "H5''" sing N N 64 DA "C4'" "O4'" sing N N 65 DA "C4'" "C3'" sing N N 66 DA "C4'" "H4'" sing N N 67 DA "O4'" "C1'" sing N N 68 DA "C3'" "O3'" sing N N 69 DA "C3'" "C2'" sing N N 70 DA "C3'" "H3'" sing N N 71 DA "O3'" "HO3'" sing N N 72 DA "C2'" "C1'" sing N N 73 DA "C2'" "H2'" sing N N 74 DA "C2'" "H2''" sing N N 75 DA "C1'" N9 sing N N 76 DA "C1'" "H1'" sing N N 77 DA N9 C8 sing Y N 78 DA N9 C4 sing Y N 79 DA C8 N7 doub Y N 80 DA C8 H8 sing N N 81 DA N7 C5 sing Y N 82 DA C5 C6 sing Y N 83 DA C5 C4 doub Y N 84 DA C6 N6 sing N N 85 DA C6 N1 doub Y N 86 DA N6 H61 sing N N 87 DA N6 H62 sing N N 88 DA N1 C2 sing Y N 89 DA C2 N3 doub Y N 90 DA C2 H2 sing N N 91 DA N3 C4 sing Y N 92 DC OP3 P sing N N 93 DC OP3 HOP3 sing N N 94 DC P OP1 doub N N 95 DC P OP2 sing N N 96 DC P "O5'" sing N N 97 DC OP2 HOP2 sing N N 98 DC "O5'" "C5'" sing N N 99 DC "C5'" "C4'" sing N N 100 DC "C5'" "H5'" sing N N 101 DC "C5'" "H5''" sing N N 102 DC "C4'" "O4'" sing N N 103 DC "C4'" "C3'" sing N N 104 DC "C4'" "H4'" sing N N 105 DC "O4'" "C1'" sing N N 106 DC "C3'" "O3'" sing N N 107 DC "C3'" "C2'" sing N N 108 DC "C3'" "H3'" sing N N 109 DC "O3'" "HO3'" sing N N 110 DC "C2'" "C1'" sing N N 111 DC "C2'" "H2'" sing N N 112 DC "C2'" "H2''" sing N N 113 DC "C1'" N1 sing N N 114 DC "C1'" "H1'" sing N N 115 DC N1 C2 sing N N 116 DC N1 C6 sing N N 117 DC C2 O2 doub N N 118 DC C2 N3 sing N N 119 DC N3 C4 doub N N 120 DC C4 N4 sing N N 121 DC C4 C5 sing N N 122 DC N4 H41 sing N N 123 DC N4 H42 sing N N 124 DC C5 C6 doub N N 125 DC C5 H5 sing N N 126 DC C6 H6 sing N N 127 DG OP3 P sing N N 128 DG OP3 HOP3 sing N N 129 DG P OP1 doub N N 130 DG P OP2 sing N N 131 DG P "O5'" sing N N 132 DG OP2 HOP2 sing N N 133 DG "O5'" "C5'" sing N N 134 DG "C5'" "C4'" sing N N 135 DG "C5'" "H5'" sing N N 136 DG "C5'" "H5''" sing N N 137 DG "C4'" "O4'" sing N N 138 DG "C4'" "C3'" sing N N 139 DG "C4'" "H4'" sing N N 140 DG "O4'" "C1'" sing N N 141 DG "C3'" "O3'" sing N N 142 DG "C3'" "C2'" sing N N 143 DG "C3'" "H3'" sing N N 144 DG "O3'" "HO3'" sing N N 145 DG "C2'" "C1'" sing N N 146 DG "C2'" "H2'" sing N N 147 DG "C2'" "H2''" sing N N 148 DG "C1'" N9 sing N N 149 DG "C1'" "H1'" sing N N 150 DG N9 C8 sing Y N 151 DG N9 C4 sing Y N 152 DG C8 N7 doub Y N 153 DG C8 H8 sing N N 154 DG N7 C5 sing Y N 155 DG C5 C6 sing N N 156 DG C5 C4 doub Y N 157 DG C6 O6 doub N N 158 DG C6 N1 sing N N 159 DG N1 C2 sing N N 160 DG N1 H1 sing N N 161 DG C2 N2 sing N N 162 DG C2 N3 doub N N 163 DG N2 H21 sing N N 164 DG N2 H22 sing N N 165 DG N3 C4 sing N N 166 DT OP3 P sing N N 167 DT OP3 HOP3 sing N N 168 DT P OP1 doub N N 169 DT P OP2 sing N N 170 DT P "O5'" sing N N 171 DT OP2 HOP2 sing N N 172 DT "O5'" "C5'" sing N N 173 DT "C5'" "C4'" sing N N 174 DT "C5'" "H5'" sing N N 175 DT "C5'" "H5''" sing N N 176 DT "C4'" "O4'" sing N N 177 DT "C4'" "C3'" sing N N 178 DT "C4'" "H4'" sing N N 179 DT "O4'" "C1'" sing N N 180 DT "C3'" "O3'" sing N N 181 DT "C3'" "C2'" sing N N 182 DT "C3'" "H3'" sing N N 183 DT "O3'" "HO3'" sing N N 184 DT "C2'" "C1'" sing N N 185 DT "C2'" "H2'" sing N N 186 DT "C2'" "H2''" sing N N 187 DT "C1'" N1 sing N N 188 DT "C1'" "H1'" sing N N 189 DT N1 C2 sing N N 190 DT N1 C6 sing N N 191 DT C2 O2 doub N N 192 DT C2 N3 sing N N 193 DT N3 C4 sing N N 194 DT N3 H3 sing N N 195 DT C4 O4 doub N N 196 DT C4 C5 sing N N 197 DT C5 C7 sing N N 198 DT C5 C6 doub N N 199 DT C7 H71 sing N N 200 DT C7 H72 sing N N 201 DT C7 H73 sing N N 202 DT C6 H6 sing N N 203 GLN N CA sing N N 204 GLN N H sing N N 205 GLN N H2 sing N N 206 GLN CA C sing N N 207 GLN CA CB sing N N 208 GLN CA HA sing N N 209 GLN C O doub N N 210 GLN C OXT sing N N 211 GLN CB CG sing N N 212 GLN CB HB2 sing N N 213 GLN CB HB3 sing N N 214 GLN CG CD sing N N 215 GLN CG HG2 sing N N 216 GLN CG HG3 sing N N 217 GLN CD OE1 doub N N 218 GLN CD NE2 sing N N 219 GLN NE2 HE21 sing N N 220 GLN NE2 HE22 sing N N 221 GLN OXT HXT sing N N 222 GLU N CA sing N N 223 GLU N H sing N N 224 GLU N H2 sing N N 225 GLU CA C sing N N 226 GLU CA CB sing N N 227 GLU CA HA sing N N 228 GLU C O doub N N 229 GLU C OXT sing N N 230 GLU CB CG sing N N 231 GLU CB HB2 sing N N 232 GLU CB HB3 sing N N 233 GLU CG CD sing N N 234 GLU CG HG2 sing N N 235 GLU CG HG3 sing N N 236 GLU CD OE1 doub N N 237 GLU CD OE2 sing N N 238 GLU OE2 HE2 sing N N 239 GLU OXT HXT sing N N 240 GLY N CA sing N N 241 GLY N H sing N N 242 GLY N H2 sing N N 243 GLY CA C sing N N 244 GLY CA HA2 sing N N 245 GLY CA HA3 sing N N 246 GLY C O doub N N 247 GLY C OXT sing N N 248 GLY OXT HXT sing N N 249 HIS N CA sing N N 250 HIS N H sing N N 251 HIS N H2 sing N N 252 HIS CA C sing N N 253 HIS CA CB sing N N 254 HIS CA HA sing N N 255 HIS C O doub N N 256 HIS C OXT sing N N 257 HIS CB CG sing N N 258 HIS CB HB2 sing N N 259 HIS CB HB3 sing N N 260 HIS CG ND1 sing Y N 261 HIS CG CD2 doub Y N 262 HIS ND1 CE1 doub Y N 263 HIS ND1 HD1 sing N N 264 HIS CD2 NE2 sing Y N 265 HIS CD2 HD2 sing N N 266 HIS CE1 NE2 sing Y N 267 HIS CE1 HE1 sing N N 268 HIS NE2 HE2 sing N N 269 HIS OXT HXT sing N N 270 HOH O H1 sing N N 271 HOH O H2 sing N N 272 ILE N CA sing N N 273 ILE N H sing N N 274 ILE N H2 sing N N 275 ILE CA C sing N N 276 ILE CA CB sing N N 277 ILE CA HA sing N N 278 ILE C O doub N N 279 ILE C OXT sing N N 280 ILE CB CG1 sing N N 281 ILE CB CG2 sing N N 282 ILE CB HB sing N N 283 ILE CG1 CD1 sing N N 284 ILE CG1 HG12 sing N N 285 ILE CG1 HG13 sing N N 286 ILE CG2 HG21 sing N N 287 ILE CG2 HG22 sing N N 288 ILE CG2 HG23 sing N N 289 ILE CD1 HD11 sing N N 290 ILE CD1 HD12 sing N N 291 ILE CD1 HD13 sing N N 292 ILE OXT HXT sing N N 293 LEU N CA sing N N 294 LEU N H sing N N 295 LEU N H2 sing N N 296 LEU CA C sing N N 297 LEU CA CB sing N N 298 LEU CA HA sing N N 299 LEU C O doub N N 300 LEU C OXT sing N N 301 LEU CB CG sing N N 302 LEU CB HB2 sing N N 303 LEU CB HB3 sing N N 304 LEU CG CD1 sing N N 305 LEU CG CD2 sing N N 306 LEU CG HG sing N N 307 LEU CD1 HD11 sing N N 308 LEU CD1 HD12 sing N N 309 LEU CD1 HD13 sing N N 310 LEU CD2 HD21 sing N N 311 LEU CD2 HD22 sing N N 312 LEU CD2 HD23 sing N N 313 LEU OXT HXT sing N N 314 LYS N CA sing N N 315 LYS N H sing N N 316 LYS N H2 sing N N 317 LYS CA C sing N N 318 LYS CA CB sing N N 319 LYS CA HA sing N N 320 LYS C O doub N N 321 LYS C OXT sing N N 322 LYS CB CG sing N N 323 LYS CB HB2 sing N N 324 LYS CB HB3 sing N N 325 LYS CG CD sing N N 326 LYS CG HG2 sing N N 327 LYS CG HG3 sing N N 328 LYS CD CE sing N N 329 LYS CD HD2 sing N N 330 LYS CD HD3 sing N N 331 LYS CE NZ sing N N 332 LYS CE HE2 sing N N 333 LYS CE HE3 sing N N 334 LYS NZ HZ1 sing N N 335 LYS NZ HZ2 sing N N 336 LYS NZ HZ3 sing N N 337 LYS OXT HXT sing N N 338 MET N CA sing N N 339 MET N H sing N N 340 MET N H2 sing N N 341 MET CA C sing N N 342 MET CA CB sing N N 343 MET CA HA sing N N 344 MET C O doub N N 345 MET C OXT sing N N 346 MET CB CG sing N N 347 MET CB HB2 sing N N 348 MET CB HB3 sing N N 349 MET CG SD sing N N 350 MET CG HG2 sing N N 351 MET CG HG3 sing N N 352 MET SD CE sing N N 353 MET CE HE1 sing N N 354 MET CE HE2 sing N N 355 MET CE HE3 sing N N 356 MET OXT HXT sing N N 357 PHE N CA sing N N 358 PHE N H sing N N 359 PHE N H2 sing N N 360 PHE CA C sing N N 361 PHE CA CB sing N N 362 PHE CA HA sing N N 363 PHE C O doub N N 364 PHE C OXT sing N N 365 PHE CB CG sing N N 366 PHE CB HB2 sing N N 367 PHE CB HB3 sing N N 368 PHE CG CD1 doub Y N 369 PHE CG CD2 sing Y N 370 PHE CD1 CE1 sing Y N 371 PHE CD1 HD1 sing N N 372 PHE CD2 CE2 doub Y N 373 PHE CD2 HD2 sing N N 374 PHE CE1 CZ doub Y N 375 PHE CE1 HE1 sing N N 376 PHE CE2 CZ sing Y N 377 PHE CE2 HE2 sing N N 378 PHE CZ HZ sing N N 379 PHE OXT HXT sing N N 380 PRO N CA sing N N 381 PRO N CD sing N N 382 PRO N H sing N N 383 PRO CA C sing N N 384 PRO CA CB sing N N 385 PRO CA HA sing N N 386 PRO C O doub N N 387 PRO C OXT sing N N 388 PRO CB CG sing N N 389 PRO CB HB2 sing N N 390 PRO CB HB3 sing N N 391 PRO CG CD sing N N 392 PRO CG HG2 sing N N 393 PRO CG HG3 sing N N 394 PRO CD HD2 sing N N 395 PRO CD HD3 sing N N 396 PRO OXT HXT sing N N 397 SER N CA sing N N 398 SER N H sing N N 399 SER N H2 sing N N 400 SER CA C sing N N 401 SER CA CB sing N N 402 SER CA HA sing N N 403 SER C O doub N N 404 SER C OXT sing N N 405 SER CB OG sing N N 406 SER CB HB2 sing N N 407 SER CB HB3 sing N N 408 SER OG HG sing N N 409 SER OXT HXT sing N N 410 THR N CA sing N N 411 THR N H sing N N 412 THR N H2 sing N N 413 THR CA C sing N N 414 THR CA CB sing N N 415 THR CA HA sing N N 416 THR C O doub N N 417 THR C OXT sing N N 418 THR CB OG1 sing N N 419 THR CB CG2 sing N N 420 THR CB HB sing N N 421 THR OG1 HG1 sing N N 422 THR CG2 HG21 sing N N 423 THR CG2 HG22 sing N N 424 THR CG2 HG23 sing N N 425 THR OXT HXT sing N N 426 TRS C C1 sing N N 427 TRS C C2 sing N N 428 TRS C C3 sing N N 429 TRS C N sing N N 430 TRS C1 O1 sing N N 431 TRS C1 H11 sing N N 432 TRS C1 H12 sing N N 433 TRS C2 O2 sing N N 434 TRS C2 H21 sing N N 435 TRS C2 H22 sing N N 436 TRS C3 O3 sing N N 437 TRS C3 H31 sing N N 438 TRS C3 H32 sing N N 439 TRS N HN1 sing N N 440 TRS N HN2 sing N N 441 TRS N HN3 sing N N 442 TRS O1 HO1 sing N N 443 TRS O2 HO2 sing N N 444 TRS O3 HO3 sing N N 445 TYR N CA sing N N 446 TYR N H sing N N 447 TYR N H2 sing N N 448 TYR CA C sing N N 449 TYR CA CB sing N N 450 TYR CA HA sing N N 451 TYR C O doub N N 452 TYR C OXT sing N N 453 TYR CB CG sing N N 454 TYR CB HB2 sing N N 455 TYR CB HB3 sing N N 456 TYR CG CD1 doub Y N 457 TYR CG CD2 sing Y N 458 TYR CD1 CE1 sing Y N 459 TYR CD1 HD1 sing N N 460 TYR CD2 CE2 doub Y N 461 TYR CD2 HD2 sing N N 462 TYR CE1 CZ doub Y N 463 TYR CE1 HE1 sing N N 464 TYR CE2 CZ sing Y N 465 TYR CE2 HE2 sing N N 466 TYR CZ OH sing N N 467 TYR OH HH sing N N 468 TYR OXT HXT sing N N 469 VAL N CA sing N N 470 VAL N H sing N N 471 VAL N H2 sing N N 472 VAL CA C sing N N 473 VAL CA CB sing N N 474 VAL CA HA sing N N 475 VAL C O doub N N 476 VAL C OXT sing N N 477 VAL CB CG1 sing N N 478 VAL CB CG2 sing N N 479 VAL CB HB sing N N 480 VAL CG1 HG11 sing N N 481 VAL CG1 HG12 sing N N 482 VAL CG1 HG13 sing N N 483 VAL CG2 HG21 sing N N 484 VAL CG2 HG22 sing N N 485 VAL CG2 HG23 sing N N 486 VAL OXT HXT sing N N 487 # _ndb_struct_conf_na.entry_id 1JKO _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 14 1_555 0.013 0.043 -0.579 -12.617 4.824 -1.233 1 A_DG3:DC29_B A 3 ? B 29 ? 19 1 1 A DT 3 1_555 B DA 13 1_555 -0.187 -0.224 -0.243 -7.485 -12.746 -12.543 2 A_DT4:DA28_B A 4 ? B 28 ? 20 1 1 A DT 4 1_555 B DA 12 1_555 -0.602 -0.217 -0.566 -1.005 -21.512 2.848 3 A_DT5:DA27_B A 5 ? B 27 ? 20 1 1 A DT 5 1_555 B DA 11 1_555 -0.224 -0.211 -0.558 4.716 -26.448 -2.954 4 A_DT6:DA26_B A 6 ? B 26 ? 20 1 1 A DT 6 1_555 B DA 10 1_555 -0.702 -0.093 -0.414 -6.830 -14.319 0.707 5 A_DT7:DA25_B A 7 ? B 25 ? 20 1 1 A DT 7 1_555 B DA 9 1_555 -0.541 -0.094 -0.133 -6.637 -20.935 -1.094 6 A_DT8:DA24_B A 8 ? B 24 ? 20 1 1 A DG 8 1_555 B DC 8 1_555 -0.564 -0.132 -0.091 -6.365 -5.087 3.744 7 A_DG9:DC23_B A 9 ? B 23 ? 19 1 1 A DG 9 1_555 B DC 7 1_555 0.130 -0.316 0.089 1.736 -13.934 0.396 8 A_DG10:DC22_B A 10 ? B 22 ? 19 1 1 A DT 10 1_555 B DA 6 1_555 -0.413 -0.337 -0.029 -2.389 -7.728 -1.363 9 A_DT11:DA21_B A 11 ? B 21 ? 20 1 1 A DA 11 1_555 B DT 5 1_555 -0.248 -0.449 -0.522 -4.334 -19.213 0.759 10 A_DA12:DT20_B A 12 ? B 20 ? 20 1 1 A DA 12 1_555 B DT 4 1_555 -0.082 -0.095 0.426 13.258 -6.880 9.802 11 A_DA13:DT19_B A 13 ? B 19 ? 20 1 1 A DG 13 1_555 B DC 3 1_555 -0.237 -0.440 -0.202 1.474 -10.087 -4.352 12 A_DG14:DC18_B A 14 ? B 18 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 14 1_555 A DT 3 1_555 B DA 13 1_555 -1.153 -0.103 3.237 -3.689 10.311 30.239 -2.050 1.417 3.149 18.999 6.798 32.117 1 AA_DG3DT4:DA28DC29_BB A 3 ? B 29 ? A 4 ? B 28 ? 1 A DT 3 1_555 B DA 13 1_555 A DT 4 1_555 B DA 12 1_555 0.215 -0.459 2.921 3.978 1.951 28.972 -1.283 0.342 2.887 3.872 -7.893 29.302 2 AA_DT4DT5:DA27DA28_BB A 4 ? B 28 ? A 5 ? B 27 ? 1 A DT 4 1_555 B DA 12 1_555 A DT 5 1_555 B DA 11 1_555 -0.220 0.393 3.092 0.632 10.933 34.756 -0.839 0.437 3.069 17.764 -1.027 36.389 3 AA_DT5DT6:DA26DA27_BB A 5 ? B 27 ? A 6 ? B 26 ? 1 A DT 5 1_555 B DA 11 1_555 A DT 6 1_555 B DA 10 1_555 1.140 1.013 3.641 3.117 -2.857 39.388 1.868 -1.276 3.638 -4.223 -4.608 39.606 4 AA_DT6DT7:DA25DA26_BB A 6 ? B 26 ? A 7 ? B 25 ? 1 A DT 6 1_555 B DA 10 1_555 A DT 7 1_555 B DA 9 1_555 -0.786 -0.396 3.182 -2.493 4.513 35.435 -1.276 0.930 3.155 7.367 4.069 35.796 5 AA_DT7DT8:DA24DA25_BB A 7 ? B 25 ? A 8 ? B 24 ? 1 A DT 7 1_555 B DA 9 1_555 A DG 8 1_555 B DC 8 1_555 1.002 1.300 3.375 1.228 3.730 38.037 1.490 -1.367 3.511 5.704 -1.878 38.232 6 AA_DT8DG9:DC23DA24_BB A 8 ? B 24 ? A 9 ? B 23 ? 1 A DG 8 1_555 B DC 8 1_555 A DG 9 1_555 B DC 7 1_555 -1.295 1.625 3.093 -4.418 5.546 37.941 1.773 1.412 3.412 8.440 6.724 38.574 7 AA_DG9DG10:DC22DC23_BB A 9 ? B 23 ? A 10 ? B 22 ? 1 A DG 9 1_555 B DC 7 1_555 A DT 10 1_555 B DA 6 1_555 0.618 -0.678 3.504 0.717 1.387 25.526 -1.953 -1.179 3.478 3.135 -1.620 25.573 8 AA_DG10DT11:DA21DC22_BB A 10 ? B 22 ? A 11 ? B 21 ? 1 A DT 10 1_555 B DA 6 1_555 A DA 11 1_555 B DT 5 1_555 -0.272 1.424 3.527 2.547 4.618 39.041 1.511 0.736 3.642 6.872 -3.790 39.382 9 AA_DT11DA12:DT20DA21_BB A 11 ? B 21 ? A 12 ? B 20 ? 1 A DA 11 1_555 B DT 5 1_555 A DA 12 1_555 B DT 4 1_555 0.500 0.015 2.732 -7.741 3.826 32.684 -0.481 -1.888 2.536 6.655 13.466 33.775 10 AA_DA12DA13:DT19DT20_BB A 12 ? B 20 ? A 13 ? B 19 ? 1 A DA 12 1_555 B DT 4 1_555 A DG 13 1_555 B DC 3 1_555 -0.732 -0.466 3.490 0.643 9.782 34.879 -2.193 1.273 3.233 15.934 -1.047 36.189 11 AA_DA13DG14:DC18DT19_BB A 13 ? B 19 ? A 14 ? B 18 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1IJW _pdbx_initial_refinement_model.details ? #