HEADER TRANSFERASE 16-JUL-01 1JLS TITLE STRUCTURE OF THE URACIL PHOSPHORIBOSYLTRANSFERASE URACIL/CPR 2 MUTANT TITLE 2 C128V COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: B, A, D, C; COMPND 4 EC: 2.4.2.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBACE KEYWDS TRANSFERASE, GLYCOSYLTRANSFERASE, UPRTASE, TERNARY COMPLEX, UPRT- KEYWDS 2 CPRPP-URACIL EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,C.J.BASHOR,K.OTSU,S.ZU,R.PARRY,B.ULLMAN,R.G.BRENNAN REVDAT 7 16-AUG-23 1JLS 1 REMARK REVDAT 6 27-OCT-21 1JLS 1 SEQADV HETSYN REVDAT 5 29-JUL-20 1JLS 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 04-OCT-17 1JLS 1 REMARK REVDAT 3 24-FEB-09 1JLS 1 VERSN REVDAT 2 01-APR-03 1JLS 1 JRNL REVDAT 1 16-JAN-02 1JLS 0 JRNL AUTH M.A.SCHUMACHER,C.J.BASHOR,M.H.SONG,K.OTSU,S.ZHU,R.J.PARRY, JRNL AUTH 2 B.ULLMAN,R.G.BRENNAN JRNL TITL THE STRUCTURAL MECHANISM OF GTP STABILIZED OLIGOMERIZATION JRNL TITL 2 AND CATALYTIC ACTIVATION OF THE TOXOPLASMA GONDII URACIL JRNL TITL 3 PHOSPHORIBOSYLTRANSFERASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 78 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11773618 JRNL DOI 10.1073/PNAS.012399599 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1115798.580 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.6 REMARK 3 NUMBER OF REFLECTIONS : 32692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3240 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3760 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 413 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7068 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : -12.97000 REMARK 3 B33 (A**2) : 12.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.61 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.67 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.010 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 89.71 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JLS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-94 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BIOTEX REMARK 200 DATA SCALING SOFTWARE : BIOTEX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.10100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26500 REMARK 200 R SYM FOR SHELL (I) : 0.26500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MERLOT REMARK 200 STARTING MODEL: 1BD3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, CITRATE/PHOSPHATE BUFFER, PEG REMARK 280 3400, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.70000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 VAL B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 LEU B 10 REMARK 465 LEU B 11 REMARK 465 VAL B 12 REMARK 465 ASP B 13 REMARK 465 PRO B 14 REMARK 465 ARG B 15 REMARK 465 TYR B 16 REMARK 465 SER B 17 REMARK 465 THR B 18 REMARK 465 ASN B 19 REMARK 465 ASP B 20 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 VAL A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 PRO A 14 REMARK 465 ARG A 15 REMARK 465 TYR A 16 REMARK 465 SER A 17 REMARK 465 THR A 18 REMARK 465 ASN A 19 REMARK 465 ASP A 20 REMARK 465 GLU A 139 REMARK 465 THR A 140 REMARK 465 THR A 141 REMARK 465 ALA A 142 REMARK 465 MET A 244 REMARK 465 ALA D 2 REMARK 465 GLN D 3 REMARK 465 VAL D 4 REMARK 465 PRO D 5 REMARK 465 ALA D 6 REMARK 465 SER D 7 REMARK 465 GLY D 8 REMARK 465 LYS D 9 REMARK 465 LEU D 10 REMARK 465 LEU D 11 REMARK 465 VAL D 12 REMARK 465 ASP D 13 REMARK 465 PRO D 14 REMARK 465 ARG D 15 REMARK 465 TYR D 16 REMARK 465 SER D 17 REMARK 465 THR D 18 REMARK 465 ASN D 19 REMARK 465 ASP D 20 REMARK 465 GLU D 139 REMARK 465 THR D 140 REMARK 465 THR D 141 REMARK 465 ALA D 142 REMARK 465 MET D 244 REMARK 465 ALA C 2 REMARK 465 GLN C 3 REMARK 465 VAL C 4 REMARK 465 PRO C 5 REMARK 465 ALA C 6 REMARK 465 SER C 7 REMARK 465 GLY C 8 REMARK 465 LYS C 9 REMARK 465 LEU C 10 REMARK 465 LEU C 11 REMARK 465 VAL C 12 REMARK 465 ASP C 13 REMARK 465 PRO C 14 REMARK 465 ARG C 15 REMARK 465 TYR C 16 REMARK 465 SER C 17 REMARK 465 THR C 18 REMARK 465 ASN C 19 REMARK 465 ASP C 20 REMARK 465 MET C 244 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY D 242 O HOH D 704 2.08 REMARK 500 OG1 THR B 169 O3P PRP B 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 231 C - N - CA ANGL. DEV. = -18.8 DEGREES REMARK 500 PRO B 231 C - N - CD ANGL. DEV. = 15.7 DEGREES REMARK 500 PRO C 210 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 PRO C 231 C - N - CA ANGL. DEV. = -13.9 DEGREES REMARK 500 PRO C 231 C - N - CD ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 23 -9.61 -58.84 REMARK 500 ILE B 29 8.14 -68.42 REMARK 500 PHE B 33 66.52 -150.83 REMARK 500 LYS B 55 0.18 -59.90 REMARK 500 PRO B 91 -19.55 -48.10 REMARK 500 TYR B 102 -121.39 -125.79 REMARK 500 SER B 103 88.99 36.95 REMARK 500 LYS B 104 153.02 -46.94 REMARK 500 VAL B 111 121.40 -36.33 REMARK 500 ARG B 112 -91.46 89.18 REMARK 500 CYS B 125 76.83 -110.30 REMARK 500 ILE B 155 -17.21 -40.31 REMARK 500 ALA B 168 -89.62 -70.98 REMARK 500 GLU B 187 43.36 -78.28 REMARK 500 GLU B 188 -6.03 -147.11 REMARK 500 ASP B 220 -166.75 -71.65 REMARK 500 TYR B 227 50.46 75.18 REMARK 500 ILE B 233 11.09 -148.51 REMARK 500 THR A 57 139.97 -38.30 REMARK 500 LEU A 78 2.20 -64.00 REMARK 500 TYR A 102 -142.66 -102.95 REMARK 500 SER A 103 115.92 72.25 REMARK 500 VAL A 111 127.20 -25.85 REMARK 500 ARG A 112 -76.29 72.76 REMARK 500 CYS A 125 72.08 -119.92 REMARK 500 ARG A 126 151.13 -36.96 REMARK 500 ILE A 147 -75.21 -123.67 REMARK 500 GLU A 149 128.27 -175.87 REMARK 500 ALA A 168 -71.26 -86.90 REMARK 500 ALA A 170 24.92 81.01 REMARK 500 VAL A 185 138.85 -26.13 REMARK 500 ILE A 195 -60.15 -95.97 REMARK 500 PRO A 210 -164.88 -65.92 REMARK 500 LYS A 211 -4.12 63.45 REMARK 500 CYS A 222 -158.87 -166.47 REMARK 500 TYR A 227 58.43 -108.31 REMARK 500 LYS D 59 -81.55 -31.24 REMARK 500 PRO D 91 16.93 -64.03 REMARK 500 TYR D 102 -135.81 -120.27 REMARK 500 SER D 103 90.76 36.25 REMARK 500 ILE D 105 -163.91 -117.22 REMARK 500 VAL D 111 123.53 -35.18 REMARK 500 ARG D 112 -55.19 87.27 REMARK 500 ARG D 126 127.55 -34.37 REMARK 500 GLU D 149 135.70 -170.15 REMARK 500 ILE D 155 -69.79 18.04 REMARK 500 ARG D 156 -15.77 -46.53 REMARK 500 ASP D 164 99.47 -161.50 REMARK 500 ILE D 195 -61.55 -101.59 REMARK 500 ASN D 224 -168.40 -112.36 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B3756 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRP B 301 O1B REMARK 620 2 PRP B 301 O2B 70.3 REMARK 620 3 PRP B 301 O3A 58.2 53.8 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BD3 RELATED DB: PDB REMARK 900 T. GONDII APO UPRTASE REMARK 900 RELATED ID: 1BD4 RELATED DB: PDB REMARK 900 T. GONDII UPRTASE-URACIL COMPLEX REMARK 900 RELATED ID: 1UPF RELATED DB: PDB REMARK 900 T. GONDII UPRTASE-5-FLUOROURACIL COMPLEX REMARK 900 RELATED ID: 1UPU RELATED DB: PDB REMARK 900 T. GONDII UPRTASE-UMP COMPLEX DBREF 1JLS B 2 244 UNP Q26998 UPP_TOXGO 2 244 DBREF 1JLS A 2 244 UNP Q26998 UPP_TOXGO 2 244 DBREF 1JLS D 2 244 UNP Q26998 UPP_TOXGO 2 244 DBREF 1JLS C 2 244 UNP Q26998 UPP_TOXGO 2 244 SEQADV 1JLS GLN B 84 UNP Q26998 GLU 84 CONFLICT SEQADV 1JLS VAL B 128 UNP Q26998 CYS 128 ENGINEERED MUTATION SEQADV 1JLS GLU B 157 UNP Q26998 ASP 157 CONFLICT SEQADV 1JLS GLN A 84 UNP Q26998 GLU 84 CONFLICT SEQADV 1JLS VAL A 128 UNP Q26998 CYS 128 ENGINEERED MUTATION SEQADV 1JLS GLU A 157 UNP Q26998 ASP 157 CONFLICT SEQADV 1JLS GLN D 84 UNP Q26998 GLU 84 CONFLICT SEQADV 1JLS VAL D 128 UNP Q26998 CYS 128 ENGINEERED MUTATION SEQADV 1JLS GLU D 157 UNP Q26998 ASP 157 CONFLICT SEQADV 1JLS GLN C 84 UNP Q26998 GLU 84 CONFLICT SEQADV 1JLS VAL C 128 UNP Q26998 CYS 128 ENGINEERED MUTATION SEQADV 1JLS GLU C 157 UNP Q26998 ASP 157 CONFLICT SEQRES 1 B 243 ALA GLN VAL PRO ALA SER GLY LYS LEU LEU VAL ASP PRO SEQRES 2 B 243 ARG TYR SER THR ASN ASP GLN GLU GLU SER ILE LEU GLN SEQRES 3 B 243 ASP ILE ILE THR ARG PHE PRO ASN VAL VAL LEU MET LYS SEQRES 4 B 243 GLN THR ALA GLN LEU ARG ALA MET MET THR ILE ILE ARG SEQRES 5 B 243 ASP LYS GLU THR PRO LYS GLU GLU PHE VAL PHE TYR ALA SEQRES 6 B 243 ASP ARG LEU ILE ARG LEU LEU ILE GLU GLU ALA LEU ASN SEQRES 7 B 243 GLU LEU PRO PHE GLN LYS LYS GLU VAL THR THR PRO LEU SEQRES 8 B 243 ASP VAL SER TYR HIS GLY VAL SER PHE TYR SER LYS ILE SEQRES 9 B 243 CYS GLY VAL SER ILE VAL ARG ALA GLY GLU SER MET GLU SEQRES 10 B 243 SER GLY LEU ARG ALA VAL CYS ARG GLY VAL ARG ILE GLY SEQRES 11 B 243 LYS ILE LEU ILE GLN ARG ASP GLU THR THR ALA GLU PRO SEQRES 12 B 243 LYS LEU ILE TYR GLU LYS LEU PRO ALA ASP ILE ARG GLU SEQRES 13 B 243 ARG TRP VAL MET LEU LEU ASP PRO MET CYS ALA THR ALA SEQRES 14 B 243 GLY SER VAL CYS LYS ALA ILE GLU VAL LEU LEU ARG LEU SEQRES 15 B 243 GLY VAL LYS GLU GLU ARG ILE ILE PHE VAL ASN ILE LEU SEQRES 16 B 243 ALA ALA PRO GLN GLY ILE GLU ARG VAL PHE LYS GLU TYR SEQRES 17 B 243 PRO LYS VAL ARG MET VAL THR ALA ALA VAL ASP ILE CYS SEQRES 18 B 243 LEU ASN SER ARG TYR TYR ILE VAL PRO GLY ILE GLY ASP SEQRES 19 B 243 PHE GLY ASP ARG TYR PHE GLY THR MET SEQRES 1 A 243 ALA GLN VAL PRO ALA SER GLY LYS LEU LEU VAL ASP PRO SEQRES 2 A 243 ARG TYR SER THR ASN ASP GLN GLU GLU SER ILE LEU GLN SEQRES 3 A 243 ASP ILE ILE THR ARG PHE PRO ASN VAL VAL LEU MET LYS SEQRES 4 A 243 GLN THR ALA GLN LEU ARG ALA MET MET THR ILE ILE ARG SEQRES 5 A 243 ASP LYS GLU THR PRO LYS GLU GLU PHE VAL PHE TYR ALA SEQRES 6 A 243 ASP ARG LEU ILE ARG LEU LEU ILE GLU GLU ALA LEU ASN SEQRES 7 A 243 GLU LEU PRO PHE GLN LYS LYS GLU VAL THR THR PRO LEU SEQRES 8 A 243 ASP VAL SER TYR HIS GLY VAL SER PHE TYR SER LYS ILE SEQRES 9 A 243 CYS GLY VAL SER ILE VAL ARG ALA GLY GLU SER MET GLU SEQRES 10 A 243 SER GLY LEU ARG ALA VAL CYS ARG GLY VAL ARG ILE GLY SEQRES 11 A 243 LYS ILE LEU ILE GLN ARG ASP GLU THR THR ALA GLU PRO SEQRES 12 A 243 LYS LEU ILE TYR GLU LYS LEU PRO ALA ASP ILE ARG GLU SEQRES 13 A 243 ARG TRP VAL MET LEU LEU ASP PRO MET CYS ALA THR ALA SEQRES 14 A 243 GLY SER VAL CYS LYS ALA ILE GLU VAL LEU LEU ARG LEU SEQRES 15 A 243 GLY VAL LYS GLU GLU ARG ILE ILE PHE VAL ASN ILE LEU SEQRES 16 A 243 ALA ALA PRO GLN GLY ILE GLU ARG VAL PHE LYS GLU TYR SEQRES 17 A 243 PRO LYS VAL ARG MET VAL THR ALA ALA VAL ASP ILE CYS SEQRES 18 A 243 LEU ASN SER ARG TYR TYR ILE VAL PRO GLY ILE GLY ASP SEQRES 19 A 243 PHE GLY ASP ARG TYR PHE GLY THR MET SEQRES 1 D 243 ALA GLN VAL PRO ALA SER GLY LYS LEU LEU VAL ASP PRO SEQRES 2 D 243 ARG TYR SER THR ASN ASP GLN GLU GLU SER ILE LEU GLN SEQRES 3 D 243 ASP ILE ILE THR ARG PHE PRO ASN VAL VAL LEU MET LYS SEQRES 4 D 243 GLN THR ALA GLN LEU ARG ALA MET MET THR ILE ILE ARG SEQRES 5 D 243 ASP LYS GLU THR PRO LYS GLU GLU PHE VAL PHE TYR ALA SEQRES 6 D 243 ASP ARG LEU ILE ARG LEU LEU ILE GLU GLU ALA LEU ASN SEQRES 7 D 243 GLU LEU PRO PHE GLN LYS LYS GLU VAL THR THR PRO LEU SEQRES 8 D 243 ASP VAL SER TYR HIS GLY VAL SER PHE TYR SER LYS ILE SEQRES 9 D 243 CYS GLY VAL SER ILE VAL ARG ALA GLY GLU SER MET GLU SEQRES 10 D 243 SER GLY LEU ARG ALA VAL CYS ARG GLY VAL ARG ILE GLY SEQRES 11 D 243 LYS ILE LEU ILE GLN ARG ASP GLU THR THR ALA GLU PRO SEQRES 12 D 243 LYS LEU ILE TYR GLU LYS LEU PRO ALA ASP ILE ARG GLU SEQRES 13 D 243 ARG TRP VAL MET LEU LEU ASP PRO MET CYS ALA THR ALA SEQRES 14 D 243 GLY SER VAL CYS LYS ALA ILE GLU VAL LEU LEU ARG LEU SEQRES 15 D 243 GLY VAL LYS GLU GLU ARG ILE ILE PHE VAL ASN ILE LEU SEQRES 16 D 243 ALA ALA PRO GLN GLY ILE GLU ARG VAL PHE LYS GLU TYR SEQRES 17 D 243 PRO LYS VAL ARG MET VAL THR ALA ALA VAL ASP ILE CYS SEQRES 18 D 243 LEU ASN SER ARG TYR TYR ILE VAL PRO GLY ILE GLY ASP SEQRES 19 D 243 PHE GLY ASP ARG TYR PHE GLY THR MET SEQRES 1 C 243 ALA GLN VAL PRO ALA SER GLY LYS LEU LEU VAL ASP PRO SEQRES 2 C 243 ARG TYR SER THR ASN ASP GLN GLU GLU SER ILE LEU GLN SEQRES 3 C 243 ASP ILE ILE THR ARG PHE PRO ASN VAL VAL LEU MET LYS SEQRES 4 C 243 GLN THR ALA GLN LEU ARG ALA MET MET THR ILE ILE ARG SEQRES 5 C 243 ASP LYS GLU THR PRO LYS GLU GLU PHE VAL PHE TYR ALA SEQRES 6 C 243 ASP ARG LEU ILE ARG LEU LEU ILE GLU GLU ALA LEU ASN SEQRES 7 C 243 GLU LEU PRO PHE GLN LYS LYS GLU VAL THR THR PRO LEU SEQRES 8 C 243 ASP VAL SER TYR HIS GLY VAL SER PHE TYR SER LYS ILE SEQRES 9 C 243 CYS GLY VAL SER ILE VAL ARG ALA GLY GLU SER MET GLU SEQRES 10 C 243 SER GLY LEU ARG ALA VAL CYS ARG GLY VAL ARG ILE GLY SEQRES 11 C 243 LYS ILE LEU ILE GLN ARG ASP GLU THR THR ALA GLU PRO SEQRES 12 C 243 LYS LEU ILE TYR GLU LYS LEU PRO ALA ASP ILE ARG GLU SEQRES 13 C 243 ARG TRP VAL MET LEU LEU ASP PRO MET CYS ALA THR ALA SEQRES 14 C 243 GLY SER VAL CYS LYS ALA ILE GLU VAL LEU LEU ARG LEU SEQRES 15 C 243 GLY VAL LYS GLU GLU ARG ILE ILE PHE VAL ASN ILE LEU SEQRES 16 C 243 ALA ALA PRO GLN GLY ILE GLU ARG VAL PHE LYS GLU TYR SEQRES 17 C 243 PRO LYS VAL ARG MET VAL THR ALA ALA VAL ASP ILE CYS SEQRES 18 C 243 LEU ASN SER ARG TYR TYR ILE VAL PRO GLY ILE GLY ASP SEQRES 19 C 243 PHE GLY ASP ARG TYR PHE GLY THR MET HET PO4 B3699 5 HET MG B3756 1 HET URA B 300 8 HET PRP B 301 22 HET PO4 A1599 5 HET PO4 A3199 5 HET PO4 A3599 5 HET URA A 400 8 HET PO4 D3399 5 HET PO4 D3499 5 HET PO4 D3799 5 HET URA D 500 8 HET PO4 C2599 5 HET PO4 C3299 5 HET URA C 600 8 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM URA URACIL HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE FORMUL 5 PO4 9(O4 P 3-) FORMUL 6 MG MG 2+ FORMUL 7 URA 4(C4 H4 N2 O2) FORMUL 8 PRP C5 H13 O14 P3 FORMUL 20 HOH *118(H2 O) HELIX 1 1 GLN B 21 ARG B 32 1 12 HELIX 2 2 THR B 42 ASP B 54 1 13 HELIX 3 3 PRO B 58 LEU B 78 1 21 HELIX 4 4 ASN B 79 LEU B 81 5 3 HELIX 5 5 ARG B 112 SER B 116 5 5 HELIX 6 6 MET B 117 CYS B 125 1 9 HELIX 7 7 ASP B 154 ARG B 158 5 5 HELIX 8 8 ALA B 170 ARG B 182 1 13 HELIX 9 9 ALA B 198 TYR B 209 1 12 HELIX 10 10 ASP B 235 GLY B 242 1 8 HELIX 11 11 GLN A 21 PHE A 33 1 13 HELIX 12 12 THR A 42 ASP A 54 1 13 HELIX 13 13 PRO A 58 GLU A 76 1 19 HELIX 14 14 ALA A 113 SER A 116 5 4 HELIX 15 15 MET A 117 CYS A 125 1 9 HELIX 16 16 ASP A 154 ARG A 158 5 5 HELIX 17 17 SER A 172 LEU A 183 1 12 HELIX 18 18 LYS A 186 GLU A 188 5 3 HELIX 19 19 ALA A 198 TYR A 209 1 12 HELIX 20 20 ASP A 235 GLY A 242 1 8 HELIX 21 21 GLN D 21 PHE D 33 1 13 HELIX 22 22 THR D 42 ASP D 54 1 13 HELIX 23 23 PRO D 58 LEU D 78 1 21 HELIX 24 24 ASN D 79 LEU D 81 5 3 HELIX 25 25 GLY D 114 ARG D 122 1 9 HELIX 26 26 ASP D 154 ARG D 158 5 5 HELIX 27 27 ALA D 170 LEU D 181 1 12 HELIX 28 28 ARG D 182 GLY D 184 5 3 HELIX 29 29 LYS D 186 GLU D 188 5 3 HELIX 30 30 ALA D 198 TYR D 209 1 12 HELIX 31 31 ASP D 235 PHE D 241 1 7 HELIX 32 32 GLN C 21 PHE C 33 1 13 HELIX 33 33 THR C 42 ASP C 54 1 13 HELIX 34 34 PRO C 58 LEU C 78 1 21 HELIX 35 35 ASN C 79 LEU C 81 5 3 HELIX 36 36 GLY C 114 CYS C 125 1 12 HELIX 37 37 ALA C 170 ARG C 182 1 13 HELIX 38 38 LYS C 186 GLU C 188 5 3 HELIX 39 39 ALA C 198 TYR C 209 1 12 HELIX 40 40 ASP C 235 GLY C 242 1 8 SHEET 1 A 7 VAL B 36 LEU B 38 0 SHEET 2 A 7 ARG B 213 VAL B 219 1 O MET B 214 N VAL B 37 SHEET 3 A 7 ILE B 190 ALA B 197 1 N PHE B 192 O ARG B 213 SHEET 4 A 7 TRP B 159 LEU B 163 1 N VAL B 160 O ILE B 191 SHEET 5 A 7 ILE B 105 ILE B 110 1 N CYS B 106 O MET B 161 SHEET 6 A 7 ARG B 129 ILE B 135 1 O GLY B 131 N GLY B 107 SHEET 7 A 7 LEU B 146 LYS B 150 -1 O TYR B 148 N LEU B 134 SHEET 1 B 4 VAL B 36 LEU B 38 0 SHEET 2 B 4 ARG B 213 VAL B 219 1 O MET B 214 N VAL B 37 SHEET 3 B 4 ILE B 190 ALA B 197 1 N PHE B 192 O ARG B 213 SHEET 4 B 4 MET B 166 CYS B 167 1 N CYS B 167 O LEU B 196 SHEET 1 C 2 PHE B 83 THR B 90 0 SHEET 2 C 2 VAL B 94 PHE B 101 -1 O VAL B 94 N THR B 90 SHEET 1 D 7 VAL A 36 LEU A 38 0 SHEET 2 D 7 ARG A 213 THR A 216 1 O MET A 214 N VAL A 37 SHEET 3 D 7 ILE A 190 VAL A 193 1 N PHE A 192 O ARG A 213 SHEET 4 D 7 TRP A 159 LEU A 163 1 N LEU A 162 O VAL A 193 SHEET 5 D 7 ILE A 105 ILE A 110 1 N VAL A 108 O LEU A 163 SHEET 6 D 7 ILE A 130 GLN A 136 1 O GLY A 131 N GLY A 107 SHEET 7 D 7 LYS A 145 LYS A 150 -1 O LYS A 145 N GLN A 136 SHEET 1 E 2 PHE A 83 THR A 89 0 SHEET 2 E 2 SER A 95 PHE A 101 -1 O SER A 100 N GLN A 84 SHEET 1 F 3 MET A 166 CYS A 167 0 SHEET 2 F 3 LEU A 196 ALA A 197 1 O LEU A 196 N CYS A 167 SHEET 3 F 3 ALA A 218 VAL A 219 1 O ALA A 218 N ALA A 197 SHEET 1 G 2 CYS A 222 LEU A 223 0 SHEET 2 G 2 ILE A 229 VAL A 230 -1 O VAL A 230 N CYS A 222 SHEET 1 H 7 VAL D 36 LEU D 38 0 SHEET 2 H 7 ARG D 213 THR D 216 1 O MET D 214 N VAL D 37 SHEET 3 H 7 ILE D 190 VAL D 193 1 N PHE D 192 O ARG D 213 SHEET 4 H 7 VAL D 160 LEU D 163 1 N LEU D 162 O ILE D 191 SHEET 5 H 7 GLY D 107 ILE D 110 1 N VAL D 108 O LEU D 163 SHEET 6 H 7 ILE D 130 GLN D 136 1 O GLY D 131 N GLY D 107 SHEET 7 H 7 LYS D 145 LYS D 150 -1 O LYS D 145 N GLN D 136 SHEET 1 I 2 PHE D 83 THR D 89 0 SHEET 2 I 2 SER D 95 PHE D 101 -1 O TYR D 96 N VAL D 88 SHEET 1 J 3 MET D 166 CYS D 167 0 SHEET 2 J 3 LEU D 196 ALA D 197 1 O LEU D 196 N CYS D 167 SHEET 3 J 3 ALA D 218 VAL D 219 1 O ALA D 218 N ALA D 197 SHEET 1 K 2 CYS D 222 LEU D 223 0 SHEET 2 K 2 ILE D 229 VAL D 230 -1 O VAL D 230 N CYS D 222 SHEET 1 L 7 VAL C 36 LEU C 38 0 SHEET 2 L 7 ARG C 213 VAL C 219 1 O MET C 214 N VAL C 37 SHEET 3 L 7 ILE C 190 ALA C 197 1 N PHE C 192 O ARG C 213 SHEET 4 L 7 TRP C 159 LEU C 163 1 N LEU C 162 O ILE C 191 SHEET 5 L 7 ILE C 105 ILE C 110 1 N VAL C 108 O LEU C 163 SHEET 6 L 7 ILE C 130 GLN C 136 1 O GLY C 131 N GLY C 107 SHEET 7 L 7 LYS C 145 LYS C 150 -1 O ILE C 147 N LEU C 134 SHEET 1 M 2 PHE C 83 THR C 90 0 SHEET 2 M 2 VAL C 94 PHE C 101 -1 O GLY C 98 N LYS C 86 LINK O1B PRP B 301 MG MG B3756 1555 1555 1.83 LINK O2B PRP B 301 MG MG B3756 1555 1555 2.39 LINK O3A PRP B 301 MG MG B3756 1555 1555 3.07 CISPEP 1 VAL A 230 PRO A 231 0 0.44 CISPEP 2 VAL D 230 PRO D 231 0 -0.26 CRYST1 71.400 111.400 71.900 90.00 97.70 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014006 0.000000 0.001894 0.00000 SCALE2 0.000000 0.008977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014035 0.00000