HEADER DE NOVO PROTEIN 17-JUL-01 1JM0 TITLE CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (FOUR-HELIX BUNDLE MODEL); COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PROTEIN WAS CHEMICALLY SYNTHESIZED KEYWDS ALPHA-HELICAL BUNDLE, PROTEIN DESIGN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.DI COSTANZO,S.GEREMIA REVDAT 5 03-APR-24 1JM0 1 REMARK LINK REVDAT 4 24-FEB-09 1JM0 1 VERSN REVDAT 3 01-APR-03 1JM0 1 JRNL REVDAT 2 11-MAR-03 1JM0 1 SPRSDE REMARK REVDAT 1 16-JAN-02 1JM0 0 SPRSDE 16-JAN-02 1JM0 1HR5 JRNL AUTH L.DI COSTANZO,H.WADE,S.GEREMIA,L.RANDACCIO,V.PAVONE, JRNL AUTH 2 W.F.DEGRADO,A.LOMBARDI JRNL TITL TOWARD THE DE NOVO DESIGN OF A CATALYTICALLY ACTIVE HELIX JRNL TITL 2 BUNDLE: A SUBSTRATE-ACCESSIBLE CARBOXYLATE-BRIDGED DINUCLEAR JRNL TITL 3 METAL CENTER. JRNL REF J.AM.CHEM.SOC. V. 123 12749 2001 JRNL REFN ISSN 0002-7863 JRNL PMID 11749531 JRNL DOI 10.1021/JA010506X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LOMBARDI,C.M.SUMMA,S.GEREMIA,L.RANDACCIO,V.PAVONE, REMARK 1 AUTH 2 W.F.DEGRADO REMARK 1 TITL RETROSTRUCTURAL ANALYSIS OF METALLOPROTEINS: APPLICATION TO REMARK 1 TITL 2 THE DESIGN OF A MINIMAL MODEL FOR DIIRON PROTEINS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 97 6298 2000 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.97.12.6298 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.M.SUMMA,A.LOMBARDI,M.LEWIS,W.F.DEGRADO REMARK 1 TITL TERTIARY TEMPLATES FOR THE DESIGN OF DIIRON PROTEINS REMARK 1 REF CURR.OPIN.STRUCT.BIOL. V. 9 500 1999 REMARK 1 REFN ISSN 0959-440X REMARK 1 DOI 10.1016/S0959-440X(99)80071-2 REMARK 1 REFERENCE 3 REMARK 1 AUTH W.F.DEGRADO,C.M.SUMMA,V.PAVONE,F.NASTRI,A.LOMBARDI REMARK 1 TITL DE NOVO DESIGN AND STRUCTURAL CHARACTERIZATION OF PROTEINS REMARK 1 TITL 2 AND METALLOPROTEINS REMARK 1 REF ANNU.REV.BIOCHEM. V. 68 779 1999 REMARK 1 REFN ISSN 0066-4154 REMARK 1 DOI 10.1146/ANNUREV.BIOCHEM.68.1.779 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 33538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1694 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2478 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.030 ; 0.023 REMARK 3 ANGLE DISTANCE (A) : 2.220 ; 2.038 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.004 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.471 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.450 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.025 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.493 ; 4.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000013924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.200 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40900 REMARK 200 R SYM FOR SHELL (I) : 0.40900 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: THEORETICAL MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400 , MN(CH3COO)2 , DMSO, TRIS REMARK 280 -HCL, PH 7.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.69000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.96500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.96500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.69000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 1 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 LEU A 6 CB - CG - CD2 ANGL. DEV. = -11.3 DEGREES REMARK 500 LEU A 26 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP B 1 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 1 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU F 36 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 10 OE1 REMARK 620 2 GLU A 10 OE2 56.5 REMARK 620 3 GLU A 36 OE1 89.6 144.9 REMARK 620 4 HIS A 39 ND1 106.2 96.1 83.9 REMARK 620 5 GLU B 36 OE2 141.2 90.4 124.6 96.1 REMARK 620 6 DMS B 301 O 91.1 104.0 83.7 158.6 76.8 REMARK 620 7 DMS B 301 O 93.0 104.6 84.2 157.4 75.1 1.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 36 OE2 REMARK 620 2 GLU B 10 OE1 139.7 REMARK 620 3 GLU B 10 OE2 91.3 57.2 REMARK 620 4 GLU B 36 OE1 129.0 84.7 139.6 REMARK 620 5 HIS B 39 ND1 92.8 114.4 98.5 84.7 REMARK 620 6 DMS B 301 O 76.7 90.6 110.2 80.3 149.4 REMARK 620 7 DMS B 301 O 78.0 90.6 112.0 78.1 148.1 2.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 OE1 REMARK 620 2 GLU A 37 OE2 52.4 REMARK 620 3 GLU C 19 OE1 135.1 135.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 16 OE1 REMARK 620 2 GLU B 19 OE1 89.8 REMARK 620 3 HOH B 505 O 177.5 92.3 REMARK 620 4 HOH B 506 O 97.7 86.7 81.0 REMARK 620 5 HOH B 507 O 94.8 92.4 86.6 167.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 37 OE1 REMARK 620 2 HOH B 504 O 93.9 REMARK 620 3 GLU E 34 OE1 99.9 160.6 REMARK 620 4 GLU E 34 OE2 101.7 98.5 65.4 REMARK 620 5 GLU E 37 OE1 169.5 84.7 84.2 88.8 REMARK 620 6 HOH E 503 O 79.7 116.0 80.2 145.4 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 10 OE1 REMARK 620 2 GLU C 10 OE2 57.6 REMARK 620 3 GLU C 36 OE1 89.9 147.1 REMARK 620 4 HIS C 39 ND1 110.3 99.5 86.7 REMARK 620 5 DMS C 302 O 90.9 102.9 80.3 155.2 REMARK 620 6 GLU D 36 OE2 145.6 91.8 120.8 88.4 80.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 16 OE1 REMARK 620 2 HOH C 507 O 94.3 REMARK 620 3 HOH C 508 O 79.7 83.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 36 OE2 REMARK 620 2 DMS C 302 O 78.7 REMARK 620 3 GLU D 10 OE1 131.8 92.3 REMARK 620 4 GLU D 10 OE2 81.6 107.9 56.1 REMARK 620 5 GLU D 36 OE1 136.1 75.8 84.6 140.4 REMARK 620 6 HIS D 39 ND1 97.0 150.7 110.9 100.0 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 506 O REMARK 620 2 GLN D 16 OE1 94.4 REMARK 620 3 GLU D 19 OE1 175.5 83.6 REMARK 620 4 HOH D 505 O 84.3 93.3 99.8 REMARK 620 5 GLU F 34 OE1 89.5 86.7 86.3 173.8 REMARK 620 6 HOH F 407 O 88.7 176.5 93.2 88.6 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 34 OE1 REMARK 620 2 GLU D 37 OE1 102.2 REMARK 620 3 HOH D 506 O 69.7 85.3 REMARK 620 4 HOH D 507 O 87.3 155.4 119.3 REMARK 620 5 HOH D 508 O 95.7 78.4 155.4 78.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 405 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 10 OE2 REMARK 620 2 GLU E 10 OE1 57.8 REMARK 620 3 GLU E 36 OE1 150.4 92.9 REMARK 620 4 HIS E 39 ND1 97.8 102.7 84.8 REMARK 620 5 GLU F 36 OE2 88.5 140.9 120.1 100.9 REMARK 620 6 DMS F 303 O 117.0 107.4 72.0 142.4 68.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F 406 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 36 OE2 REMARK 620 2 GLU F 10 OE2 93.4 REMARK 620 3 GLU F 10 OE1 144.0 57.8 REMARK 620 4 GLU F 36 OE1 118.9 147.3 90.4 REMARK 620 5 HIS F 39 ND1 95.9 101.6 110.0 80.9 REMARK 620 6 DMS F 303 O 73.6 108.9 94.4 78.5 148.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN E 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN F 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS F 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EC5 RELATED DB: PDB REMARK 900 1EC5 IS THE ZINC DERIVATIVE WITH ALA13 RESIDUE MUTATED TO LEU REMARK 900 RELATED ID: 1JMB RELATED DB: PDB REMARK 900 1JMB IS A DIFFERENT CRYSTALLINE FORM (S.G. C 2 2 21) OF THE SAME REMARK 900 STRUCTURE DBREF 1JM0 A 0 49 PDB 1JM0 1JM0 0 49 DBREF 1JM0 B 0 49 PDB 1JM0 1JM0 0 49 DBREF 1JM0 C 0 49 PDB 1JM0 1JM0 0 49 DBREF 1JM0 D 0 49 PDB 1JM0 1JM0 0 49 DBREF 1JM0 E 0 49 PDB 1JM0 1JM0 0 49 DBREF 1JM0 F 0 49 PDB 1JM0 1JM0 0 49 SEQRES 1 A 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 A 50 ALA ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 A 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 A 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 B 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 B 50 ALA ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 B 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 B 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 C 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 C 50 ALA ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 C 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 C 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 D 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 D 50 ALA ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 D 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 D 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 E 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 E 50 ALA ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 E 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 E 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 SEQRES 1 F 50 ACE ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN SEQRES 2 F 50 ALA ILE LYS GLN TYR ARG GLU ALA LEU GLU TYR VAL LYS SEQRES 3 F 50 LEU PRO VAL LEU ALA LYS ILE LEU GLU ASP GLU GLU LYS SEQRES 4 F 50 HIS ILE GLU TRP LEU GLU THR ILE LEU GLY NH2 HET ACE A 0 3 HET NH2 A 49 1 HET ACE B 0 3 HET NH2 B 49 1 HET ACE C 0 3 HET NH2 C 49 1 HET ACE D 0 3 HET NH2 D 49 1 HET ACE E 0 3 HET NH2 E 49 1 HET ACE F 0 3 HET NH2 F 49 1 HET MN A 401 1 HET MN B 402 1 HET MN B 503 1 HET DMS B 301 8 HET MN C 403 1 HET MN C 505 2 HET DMS C 302 4 HET MN D 404 1 HET MN D 501 1 HET MN D 504 1 HET MN E 405 1 HET MN E 502 1 HET MN F 406 1 HET DMS F 303 4 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM MN MANGANESE (II) ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 1 ACE 6(C2 H4 O) FORMUL 1 NH2 6(H2 N) FORMUL 7 MN 11(MN 2+) FORMUL 10 DMS 3(C2 H6 O S) FORMUL 21 HOH *247(H2 O) HELIX 1 1 ASP A 1 LYS A 25 1 25 HELIX 2 2 LEU A 26 LEU A 47 1 22 HELIX 3 3 ASP B 1 VAL B 24 1 24 HELIX 4 4 LEU B 26 LEU B 47 1 22 HELIX 5 5 ASP C 1 VAL C 24 1 24 HELIX 6 6 LEU C 26 LEU C 47 1 22 HELIX 7 7 ASP D 1 VAL D 24 1 24 HELIX 8 8 LEU D 26 LEU D 47 1 22 HELIX 9 9 ASP E 1 VAL E 24 1 24 HELIX 10 10 LEU E 26 GLY E 48 1 23 HELIX 11 11 ASP F 1 VAL F 24 1 24 HELIX 12 12 LEU F 26 LEU F 47 1 22 LINK C ACE A 0 N ASP A 1 1555 1555 1.33 LINK C GLY A 48 N NH2 A 49 1555 1555 1.33 LINK C ACE B 0 N ASP B 1 1555 1555 1.33 LINK C GLY B 48 N NH2 B 49 1555 1555 1.31 LINK C ACE C 0 N ASP C 1 1555 1555 1.33 LINK C GLY C 48 N NH2 C 49 1555 1555 1.34 LINK C ACE D 0 N ASP D 1 1555 1555 1.33 LINK C GLY D 48 N NH2 D 49 1555 1555 1.33 LINK C ACE E 0 N ASP E 1 1555 1555 1.33 LINK C GLY E 48 N NH2 E 49 1555 1555 1.33 LINK C ACE F 0 N ASP F 1 1555 1555 1.33 LINK C GLY F 48 N NH2 F 49 1555 1555 1.34 LINK OE1 GLU A 10 MN MN A 401 1555 1555 2.30 LINK OE2 GLU A 10 MN MN A 401 1555 1555 2.27 LINK OE1 GLU A 36 MN MN A 401 1555 1555 2.04 LINK OE2 GLU A 36 MN MN B 402 1555 1555 2.11 LINK OE1 GLU A 37 MN B MN C 505 3454 1555 2.17 LINK OE2 GLU A 37 MN B MN C 505 3454 1555 2.69 LINK ND1 HIS A 39 MN MN A 401 1555 1555 2.31 LINK MN MN A 401 OE2 GLU B 36 1555 1555 2.11 LINK MN MN A 401 O ADMS B 301 1555 1555 2.44 LINK MN MN A 401 O BDMS B 301 1555 1555 2.38 LINK OE1 GLU B 10 MN MN B 402 1555 1555 2.32 LINK OE2 GLU B 10 MN MN B 402 1555 1555 2.11 LINK OE1 GLN B 16 MN MN B 503 1555 1555 2.19 LINK OE1 GLU B 19 MN MN B 503 1555 1555 2.10 LINK OE1 GLU B 36 MN MN B 402 1555 1555 2.01 LINK OE1 GLU B 37 MN MN E 502 1555 1555 2.22 LINK ND1 HIS B 39 MN MN B 402 1555 1555 2.24 LINK O ADMS B 301 MN MN B 402 1555 1555 2.42 LINK O BDMS B 301 MN MN B 402 1555 1555 2.39 LINK MN MN B 503 O HOH B 505 1555 1555 2.14 LINK MN MN B 503 O HOH B 506 1555 1555 2.05 LINK MN MN B 503 O HOH B 507 1555 1555 2.05 LINK O HOH B 504 MN MN E 502 1555 1555 2.08 LINK OE1 GLU C 10 MN MN C 403 1555 1555 2.37 LINK OE2 GLU C 10 MN MN C 403 1555 1555 2.23 LINK OE1 GLN C 16 MN A MN C 505 1555 1555 2.13 LINK OE1 GLU C 19 MN B MN C 505 1555 1555 2.30 LINK OE1 GLU C 36 MN MN C 403 1555 1555 2.08 LINK OE2 GLU C 36 MN MN D 404 1555 1555 2.06 LINK ND1 HIS C 39 MN MN C 403 1555 1555 2.19 LINK O DMS C 302 MN MN C 403 1555 1555 2.42 LINK O DMS C 302 MN MN D 404 1555 1555 2.34 LINK MN MN C 403 OE2 GLU D 36 1555 1555 2.03 LINK MN A MN C 505 O HOH C 507 1555 1555 2.14 LINK MN A MN C 505 O HOH C 508 1555 1555 2.25 LINK O HOH C 506 MN MN D 501 1555 1555 2.05 LINK OE1 GLU D 10 MN MN D 404 1555 1555 2.26 LINK OE2 GLU D 10 MN MN D 404 1555 1555 2.33 LINK OE1 GLN D 16 MN MN D 501 1555 1555 2.13 LINK OE1 GLU D 19 MN MN D 501 1555 1555 1.97 LINK OE1 GLU D 34 MN MN D 504 1555 1555 2.16 LINK OE1 GLU D 36 MN MN D 404 1555 1555 2.09 LINK OE1 GLU D 37 MN MN D 504 1555 1555 2.11 LINK ND1 HIS D 39 MN MN D 404 1555 1555 2.24 LINK MN MN D 501 O HOH D 505 1555 1555 2.06 LINK MN MN D 501 OE1 GLU F 34 1555 1555 2.12 LINK MN MN D 501 O HOH F 407 1555 1555 2.13 LINK MN MN D 504 O HOH D 506 1555 1555 2.01 LINK MN MN D 504 O HOH D 507 1555 1555 2.05 LINK MN MN D 504 O HOH D 508 1555 1555 2.02 LINK OE2 GLU E 10 MN MN E 405 1555 1555 2.31 LINK OE1 GLU E 10 MN MN E 405 1555 1555 2.19 LINK OE1 GLU E 34 MN MN E 502 1555 1555 1.96 LINK OE2 GLU E 34 MN MN E 502 1555 1555 2.04 LINK OE1 GLU E 36 MN MN E 405 1555 1555 2.07 LINK OE2 GLU E 36 MN MN F 406 1555 1555 2.07 LINK OE1 GLU E 37 MN MN E 502 1555 1555 2.12 LINK ND1 HIS E 39 MN MN E 405 1555 1555 2.23 LINK MN MN E 405 OE2 GLU F 36 1555 1555 2.06 LINK MN MN E 405 O DMS F 303 1555 1555 2.46 LINK MN MN E 502 O HOH E 503 1555 1555 2.22 LINK OE2 GLU F 10 MN MN F 406 1555 1555 2.19 LINK OE1 GLU F 10 MN MN F 406 1555 1555 2.29 LINK OE1 GLU F 36 MN MN F 406 1555 1555 2.07 LINK ND1 HIS F 39 MN MN F 406 1555 1555 2.26 LINK O DMS F 303 MN MN F 406 1555 1555 2.33 SITE 1 AC1 6 GLU A 10 GLU A 36 HIS A 39 GLU B 36 SITE 2 AC1 6 DMS B 301 MN B 402 SITE 1 AC2 6 GLU A 36 MN A 401 GLU B 10 GLU B 36 SITE 2 AC2 6 HIS B 39 DMS B 301 SITE 1 AC3 6 GLU C 10 GLU C 36 HIS C 39 DMS C 302 SITE 2 AC3 6 GLU D 36 MN D 404 SITE 1 AC4 6 GLU C 36 DMS C 302 MN C 403 GLU D 10 SITE 2 AC4 6 GLU D 36 HIS D 39 SITE 1 AC5 5 GLU E 10 GLU E 36 HIS E 39 GLU F 36 SITE 2 AC5 5 DMS F 303 SITE 1 AC6 5 GLU E 36 GLU F 10 GLU F 36 HIS F 39 SITE 2 AC6 5 DMS F 303 SITE 1 AC7 6 HOH C 506 GLN D 16 GLU D 19 HOH D 505 SITE 2 AC7 6 GLU F 34 HOH F 407 SITE 1 AC8 5 GLU B 37 HOH B 504 GLU E 34 GLU E 37 SITE 2 AC8 5 HOH E 503 SITE 1 AC9 5 GLN B 16 GLU B 19 HOH B 505 HOH B 506 SITE 2 AC9 5 HOH B 507 SITE 1 BC1 5 GLU D 34 GLU D 37 HOH D 506 HOH D 507 SITE 2 BC1 5 HOH D 508 SITE 1 BC2 5 GLU A 37 GLN C 16 GLU C 19 HOH C 507 SITE 2 BC2 5 HOH C 508 SITE 1 BC3 10 LEU A 9 GLU A 10 ALA A 13 GLU A 36 SITE 2 BC3 10 MN A 401 LEU B 9 GLU B 10 ALA B 13 SITE 3 BC3 10 GLU B 36 MN B 402 SITE 1 BC4 9 LEU C 9 GLU C 10 ALA C 13 GLU C 36 SITE 2 BC4 9 MN C 403 GLU D 10 ALA D 13 GLU D 36 SITE 3 BC4 9 MN D 404 SITE 1 BC5 8 GLU E 10 GLU E 36 MN E 405 LEU F 9 SITE 2 BC5 8 GLU F 10 ALA F 13 GLU F 36 MN F 406 CRYST1 37.380 80.120 99.930 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026752 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010007 0.00000 HETATM 1 C ACE A 0 -13.024 -2.195 -27.477 1.00 36.93 C HETATM 2 O ACE A 0 -12.580 -1.639 -26.474 1.00 36.69 O HETATM 3 CH3 ACE A 0 -14.436 -2.706 -27.503 1.00 37.84 C