HEADER TRANSCRIPTION 23-JUL-01 1JN7 TITLE SOLUTION STRUCTURE OF A CCHH MUTANT OF THE NINTH CCHC ZINC FINGER OF TITLE 2 U-SHAPED COMPND MOL_ID: 1; COMPND 2 MOLECULE: U-SHAPED TRANSCRIPTIONAL COFACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NINTH ZINC-FINGER DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: U-SHAPED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS ZINC FINGER, PROTEIN-PROTEIN INTERACTION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.KOWALSKI,J.P.MACKAY REVDAT 3 27-OCT-21 1JN7 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1JN7 1 VERSN REVDAT 1 25-SEP-02 1JN7 0 JRNL AUTH K.KOWALSKI,C.K.LIEW,J.M.MATTHEWS,D.A.GELL,M.CROSSLEY, JRNL AUTH 2 J.P.MACKAY JRNL TITL CHARACTERIZATION OF THE CONSERVED INTERACTION BETWEEN GATA JRNL TITL 2 AND FOG FAMILY PROTEINS JRNL REF J.BIOL.CHEM. V. 277 35720 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12110675 JRNL DOI 10.1074/JBC.M204663200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 0.5 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER ET AL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JN7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013962. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : 5.0; 5.0 REMARK 210 IONIC STRENGTH : 1.5MM ZNSO4; 0.75MM ZNSO4 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN; 1.5MM ZNSO4; 1.5MM REMARK 210 TCEP; 95% H2O, 5% D2O; 0.5MM REMARK 210 PROTEIN U-15N; 0.75MM ZNSO4; REMARK 210 0.75MM TCEP; 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; E-COSY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR REMARK 210 TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -169.40 -170.42 REMARK 500 1 ALA A 4 -70.41 -175.08 REMARK 500 1 GLU A 5 64.85 165.51 REMARK 500 1 MET A 7 171.99 64.26 REMARK 500 1 LYS A 8 -76.64 -147.25 REMARK 500 1 HIS A 32 39.17 -97.34 REMARK 500 1 LYS A 33 74.10 -177.74 REMARK 500 1 LYS A 35 56.49 -176.77 REMARK 500 2 ALA A 4 100.11 58.96 REMARK 500 2 GLU A 5 64.85 165.51 REMARK 500 2 MET A 7 79.98 -173.83 REMARK 500 2 LYS A 8 -85.23 -151.52 REMARK 500 2 LYS A 9 45.88 -147.00 REMARK 500 2 THR A 13 -34.87 -134.38 REMARK 500 2 HIS A 32 42.73 -96.12 REMARK 500 2 LYS A 33 44.34 -172.51 REMARK 500 2 ASN A 34 36.60 -174.24 REMARK 500 2 LYS A 35 84.46 59.92 REMARK 500 3 SER A 2 33.70 -166.65 REMARK 500 3 GLU A 5 64.96 165.45 REMARK 500 3 MET A 7 89.36 60.35 REMARK 500 3 THR A 13 -35.14 -134.42 REMARK 500 3 HIS A 32 42.43 -95.77 REMARK 500 3 LYS A 33 44.31 -168.89 REMARK 500 3 ASN A 34 36.94 -175.00 REMARK 500 3 LYS A 35 87.62 -174.97 REMARK 500 4 SER A 2 85.79 60.37 REMARK 500 4 ALA A 3 40.01 -109.69 REMARK 500 4 GLU A 5 64.80 165.48 REMARK 500 4 VAL A 6 57.08 -92.52 REMARK 500 4 MET A 7 82.13 -162.40 REMARK 500 4 LYS A 8 87.22 -178.48 REMARK 500 4 THR A 13 -34.96 -134.35 REMARK 500 4 HIS A 32 51.28 -113.16 REMARK 500 4 LYS A 33 54.76 -144.96 REMARK 500 5 ALA A 3 95.35 59.97 REMARK 500 5 GLU A 5 64.96 165.49 REMARK 500 5 MET A 7 83.96 61.62 REMARK 500 5 LYS A 8 -38.17 -179.15 REMARK 500 5 THR A 13 -35.07 -134.38 REMARK 500 5 HIS A 32 43.84 -98.06 REMARK 500 5 LYS A 33 44.60 -145.25 REMARK 500 5 ASN A 34 39.56 -160.52 REMARK 500 5 LYS A 35 153.31 61.31 REMARK 500 6 SER A 2 171.84 58.60 REMARK 500 6 ALA A 4 70.72 60.61 REMARK 500 6 GLU A 5 64.90 165.40 REMARK 500 6 MET A 7 62.44 -162.08 REMARK 500 6 THR A 13 -34.99 -134.47 REMARK 500 6 HIS A 32 39.68 -97.02 REMARK 500 REMARK 500 THIS ENTRY HAS 158 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 37 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 14 SG 113.3 REMARK 620 3 HIS A 27 NE2 112.8 112.3 REMARK 620 4 HIS A 32 NE2 109.7 109.9 97.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 37 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FU9 RELATED DB: PDB REMARK 900 1FU9 IS THE SOLUTION STRUCTURE OF THE NINTH ZINC-FINGER DOMAIN OF REMARK 900 THE U-SHAPED TRANSCRIPTION FACTOR REMARK 900 RELATED ID: 1FV5 RELATED DB: PDB REMARK 900 1FV5 IS THE SOLUTION STRUCTURE OF THE FIRST ZINC FINGER FROM THE REMARK 900 DROSOPHILA U-SHAPED TRANSCRIPTION FACTOR DBREF 1JN7 A 3 36 UNP Q9VPQ6 USH_DROME 587 620 SEQADV 1JN7 GLY A 1 UNP Q9VPQ6 CLONING ARTIFACT SEQADV 1JN7 SER A 2 UNP Q9VPQ6 CLONING ARTIFACT SEQADV 1JN7 HIS A 32 UNP Q9VPQ6 CYS 616 ENGINEERED MUTATION SEQRES 1 A 36 GLY SER ALA ALA GLU VAL MET LYS LYS TYR CYS SER THR SEQRES 2 A 36 CYS ASP ILE SER PHE ASN TYR VAL LYS THR TYR LEU ALA SEQRES 3 A 36 HIS LYS GLN PHE TYR HIS LYS ASN LYS PRO HET ZN A 37 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 TYR A 20 TYR A 31 1 12 SHEET 1 A 2 TYR A 10 CYS A 11 0 SHEET 2 A 2 ILE A 16 SER A 17 -1 O ILE A 16 N CYS A 11 LINK SG CYS A 11 ZN ZN A 37 1555 1555 2.30 LINK SG CYS A 14 ZN ZN A 37 1555 1555 2.29 LINK NE2 HIS A 27 ZN ZN A 37 1555 1555 1.99 LINK NE2 HIS A 32 ZN ZN A 37 1555 1555 1.99 SITE 1 AC1 4 CYS A 11 CYS A 14 HIS A 27 HIS A 32 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1