HEADER METAL BINDING PROTEIN 24-JUL-01 1JNF TITLE RABBIT SERUM TRANSFERRIN AT 2.6 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEROTRANSFERRIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: SERUM KEYWDS BETA-ALPHA PROTEIN, BILOBAL, IRON TRANSPORT, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.R.HALL,J.M.HADDEN,G.A.LEONARD,S.BAILEY,M.NEU,M.WINN,P.F.LINDLEY REVDAT 5 03-APR-24 1JNF 1 REMARK SEQADV LINK REVDAT 4 04-OCT-17 1JNF 1 REMARK REVDAT 3 24-FEB-09 1JNF 1 VERSN REVDAT 2 09-JAN-02 1JNF 1 JRNL REMARK AUTHOR REVDAT 1 01-AUG-01 1JNF 0 JRNL AUTH D.R.HALL,J.M.HADDEN,G.A.LEONARD,S.BAILEY,M.NEU,M.WINN, JRNL AUTH 2 P.F.LINDLEY JRNL TITL THE CRYSTAL AND MOLECULAR STRUCTURES OF DIFERRIC PORCINE AND JRNL TITL 2 RABBIT SERUM TRANSFERRINS AT RESOLUTIONS OF 2.15 AND 2.60 A, JRNL TITL 3 RESPECTIVELY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 70 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 11752780 JRNL DOI 10.1107/S0907444901017309 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 34433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1808 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5216 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : 1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.323 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.223 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.141 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5357 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4692 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7251 ; 1.942 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11010 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 673 ; 4.700 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 956 ;22.107 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 774 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6001 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1053 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1386 ; 0.254 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4948 ; 0.235 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 431 ; 0.178 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 11 ; 0.164 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.099 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 14 ; 0.200 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.213 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3357 ; 1.077 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5363 ; 2.016 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2000 ; 2.704 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1888 ; 4.632 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1JNF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-93 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 6 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : PT-COATED QUARTZ REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, ROTAVATA REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36323 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.24800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: STRUCTURE AT 3.3 A DETERMINED BY MIR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M TRIS/HCL, ACETIC ACID OR HCL, PH REMARK 280 5.4, BATCH CRYSTALLISATION, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.42500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.59500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.63750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.59500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.21250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.59500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.63750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.59500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.21250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.42500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 THR A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 ASP A 257 CG OD1 OD2 REMARK 470 ASP A 337 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 375 OG SER A 665 2.06 REMARK 500 OH TYR A 395 O HOH A 956 2.17 REMARK 500 NH1 ARG A 254 O ASP A 257 2.17 REMARK 500 OE2 GLU A 669 O HOH A 947 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 236 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 297 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 310 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 392 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 437 CB - CG - OD2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP A 526 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 -169.74 71.84 REMARK 500 GLU A 32 -5.13 -43.89 REMARK 500 ASN A 106 -35.92 71.79 REMARK 500 SER A 125 -71.10 -56.75 REMARK 500 TRP A 128 -62.32 -142.62 REMARK 500 GLU A 141 -50.42 -23.71 REMARK 500 SER A 155 47.62 -103.20 REMARK 500 CYS A 161 -2.97 92.52 REMARK 500 CYS A 174 75.35 -152.02 REMARK 500 CYS A 179 45.15 -95.42 REMARK 500 GLU A 237 36.13 -98.62 REMARK 500 CYS A 241 60.99 -152.44 REMARK 500 SER A 287 138.67 179.03 REMARK 500 LEU A 294 -45.76 69.37 REMARK 500 ASP A 310 -169.02 -100.13 REMARK 500 PRO A 332 42.45 -94.54 REMARK 500 PRO A 334 89.40 -39.86 REMARK 500 ASP A 337 86.59 82.50 REMARK 500 CYS A 417 2.86 -61.24 REMARK 500 ALA A 452 157.86 173.61 REMARK 500 ASP A 454 -7.30 83.67 REMARK 500 TRP A 459 -64.71 -150.68 REMARK 500 ASN A 468 1.46 -59.92 REMARK 500 LYS A 489 -31.05 -33.10 REMARK 500 LEU A 493 11.34 -63.72 REMARK 500 VAL A 498 -46.44 -144.33 REMARK 500 CYS A 503 10.80 90.51 REMARK 500 LYS A 524 -24.50 -144.62 REMARK 500 CYS A 574 64.19 -154.20 REMARK 500 LYS A 595 -83.51 -47.54 REMARK 500 THR A 623 -122.37 -96.97 REMARK 500 LEU A 627 -46.63 63.46 REMARK 500 THR A 664 18.73 -145.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 702 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD1 REMARK 620 2 TYR A 95 OH 89.8 REMARK 620 3 TYR A 188 OH 166.5 92.2 REMARK 620 4 HIS A 249 NE2 89.8 95.6 76.6 REMARK 620 5 CO3 A 700 O2 88.5 90.8 104.9 173.3 REMARK 620 6 CO3 A 700 O3 79.2 156.8 103.3 104.7 68.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 703 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 392 OD1 REMARK 620 2 TYR A 425 OH 77.3 REMARK 620 3 TYR A 514 OH 164.8 102.1 REMARK 620 4 HIS A 582 NE2 83.5 93.4 81.4 REMARK 620 5 CO3 A 701 O1 82.9 85.8 112.3 166.2 REMARK 620 6 CO3 A 701 O3 96.5 154.8 90.0 110.3 69.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 800 DBREF 1JNF A 1 676 UNP P19134 TRFE_RABIT 20 695 SEQADV 1JNF LEU A 136 UNP P19134 TYR 155 CONFLICT SEQADV 1JNF GLY A 348 UNP P19134 SER 367 CONFLICT SEQADV 1JNF PHE A 605 UNP P19134 TYR 624 CONFLICT SEQRES 1 A 676 VAL THR GLU LYS THR VAL ARG TRP CYS ALA VAL ASN ASP SEQRES 2 A 676 HIS GLU ALA SER LYS CYS ALA ASN PHE ARG ASP SER MET SEQRES 3 A 676 LYS LYS VAL LEU PRO GLU ASP GLY PRO ARG ILE ILE CYS SEQRES 4 A 676 VAL LYS LYS ALA SER TYR LEU ASP CYS ILE LYS ALA ILE SEQRES 5 A 676 ALA ALA HIS GLU ALA ASP ALA VAL THR LEU ASP ALA GLY SEQRES 6 A 676 LEU VAL HIS GLU ALA GLY LEU THR PRO ASN ASN LEU LYS SEQRES 7 A 676 PRO VAL VAL ALA GLU PHE TYR GLY SER LYS GLU ASN PRO SEQRES 8 A 676 LYS THR PHE TYR TYR ALA VAL ALA LEU VAL LYS LYS GLY SEQRES 9 A 676 SER ASN PHE GLN LEU ASN GLU LEU GLN GLY LYS LYS SER SEQRES 10 A 676 CYS HIS THR GLY LEU GLY ARG SER ALA GLY TRP ASN ILE SEQRES 11 A 676 PRO ILE GLY LEU LEU LEU CYS ASP LEU PRO GLU PRO ARG SEQRES 12 A 676 LYS PRO LEU GLU LYS ALA VAL ALA SER PHE PHE SER GLY SEQRES 13 A 676 SER CYS VAL PRO CYS ALA ASP GLY ALA ASP PHE PRO GLN SEQRES 14 A 676 LEU CYS GLN LEU CYS PRO GLY CYS GLY CYS SER SER VAL SEQRES 15 A 676 GLN PRO TYR PHE GLY TYR SER GLY ALA PHE LYS CYS LEU SEQRES 16 A 676 LYS ASP GLY LEU GLY ASP VAL ALA PHE VAL LYS GLN GLU SEQRES 17 A 676 THR ILE PHE GLU ASN LEU PRO SER LYS ASP GLU ARG ASP SEQRES 18 A 676 GLN TYR GLU LEU LEU CYS LEU ASP ASN THR ARG LYS PRO SEQRES 19 A 676 VAL ASP GLU TYR GLU GLN CYS HIS LEU ALA ARG VAL PRO SEQRES 20 A 676 SER HIS ALA VAL VAL ALA ARG SER VAL ASP GLY LYS GLU SEQRES 21 A 676 ASP LEU ILE TRP GLU LEU LEU ASN GLN ALA GLN GLU HIS SEQRES 22 A 676 PHE GLY LYS ASP LYS SER GLY ASP PHE GLN LEU PHE SER SEQRES 23 A 676 SER PRO HIS GLY LYS ASN LEU LEU PHE LYS ASP SER ALA SEQRES 24 A 676 TYR GLY PHE PHE LYS VAL PRO PRO ARG MET ASP ALA ASN SEQRES 25 A 676 LEU TYR LEU GLY TYR GLU TYR VAL THR ALA VAL ARG ASN SEQRES 26 A 676 LEU ARG GLU GLY ILE CYS PRO ASP PRO LEU GLN ASP GLU SEQRES 27 A 676 CYS LYS ALA VAL LYS TRP CYS ALA LEU GLY HIS HIS GLU SEQRES 28 A 676 ARG LEU LYS CYS ASP GLU TRP SER VAL THR SER GLY GLY SEQRES 29 A 676 LEU ILE GLU CYS GLU SER ALA GLU THR PRO GLU ASP CYS SEQRES 30 A 676 ILE ALA LYS ILE MET ASN GLY GLU ALA ASP ALA MET SER SEQRES 31 A 676 LEU ASP GLY GLY TYR VAL TYR ILE ALA GLY GLN CYS GLY SEQRES 32 A 676 LEU VAL PRO VAL LEU ALA GLU ASN TYR GLU SER THR ASP SEQRES 33 A 676 CYS LYS LYS ALA PRO GLU GLU GLY TYR LEU SER VAL ALA SEQRES 34 A 676 VAL VAL LYS LYS SER ASN PRO ASP ILE ASN TRP ASN ASN SEQRES 35 A 676 LEU GLU GLY LYS LYS SER CYS HIS THR ALA VAL ASP ARG SEQRES 36 A 676 THR ALA GLY TRP ASN ILE PRO MET GLY LEU LEU TYR ASN SEQRES 37 A 676 ARG ILE ASN HIS CYS ARG PHE ASP GLU PHE PHE ARG GLN SEQRES 38 A 676 GLY CYS ALA PRO GLY SER GLN LYS ASN SER SER LEU CYS SEQRES 39 A 676 GLU LEU CYS VAL GLY PRO SER VAL CYS ALA PRO ASN ASN SEQRES 40 A 676 ARG GLU GLY TYR TYR GLY TYR THR GLY ALA PHE ARG CYS SEQRES 41 A 676 LEU VAL GLU LYS GLY ASP VAL ALA PHE VAL LYS SER GLN SEQRES 42 A 676 THR VAL LEU GLN ASN THR GLY GLY ARG ASN SER GLU PRO SEQRES 43 A 676 TRP ALA LYS ASP LEU LYS GLU GLU ASP PHE GLU LEU LEU SEQRES 44 A 676 CYS LEU ASP GLY THR ARG LYS PRO VAL SER GLU ALA HIS SEQRES 45 A 676 ASN CYS HIS LEU ALA LYS ALA PRO ASN HIS ALA VAL VAL SEQRES 46 A 676 SER ARG LYS ASP LYS ALA ALA CYS VAL LYS GLN LYS LEU SEQRES 47 A 676 LEU ASP LEU GLN VAL GLU PHE GLY ASN THR VAL ALA ASP SEQRES 48 A 676 CYS SER SER LYS PHE CYS MET PHE HIS SER LYS THR LYS SEQRES 49 A 676 ASP LEU LEU PHE ARG ASP ASP THR LYS CYS LEU VAL ASP SEQRES 50 A 676 LEU ARG GLY LYS ASN THR TYR GLU LYS TYR LEU GLY ALA SEQRES 51 A 676 ASP TYR ILE LYS ALA VAL SER ASN LEU ARG LYS CYS SER SEQRES 52 A 676 THR SER ARG LEU LEU GLU ALA CYS THR PHE HIS LYS HIS HET CO3 A 700 4 HET CO3 A 701 4 HET FE A 702 1 HET FE A 703 1 HET CL A 800 1 HETNAM CO3 CARBONATE ION HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION FORMUL 2 CO3 2(C O3 2-) FORMUL 4 FE 2(FE 3+) FORMUL 6 CL CL 1- FORMUL 7 HOH *206(H2 O) HELIX 1 1 ASN A 12 LEU A 30 1 19 HELIX 2 2 SER A 44 ALA A 54 1 11 HELIX 3 3 ASP A 63 LEU A 72 1 10 HELIX 4 4 GLN A 108 LEU A 112 5 5 HELIX 5 5 TRP A 128 LEU A 136 1 9 HELIX 6 6 CYS A 137 LEU A 139 5 3 HELIX 7 7 PRO A 145 PHE A 154 1 10 HELIX 8 8 PHE A 167 GLN A 172 5 6 HELIX 9 9 PHE A 186 ASP A 197 1 12 HELIX 10 10 GLU A 208 LEU A 214 1 7 HELIX 11 11 SER A 216 ASP A 221 1 6 HELIX 12 12 ASP A 236 TYR A 238 5 3 HELIX 13 13 LYS A 259 GLY A 275 1 17 HELIX 14 14 ASP A 310 GLY A 316 1 7 HELIX 15 15 GLY A 316 GLU A 328 1 13 HELIX 16 16 GLY A 348 GLY A 363 1 16 HELIX 17 17 THR A 373 ASN A 383 1 11 HELIX 18 18 ASP A 392 CYS A 402 1 11 HELIX 19 19 ASN A 439 LEU A 443 5 5 HELIX 20 20 TRP A 459 ASN A 471 1 13 HELIX 21 21 ARG A 474 PHE A 479 1 6 HELIX 22 22 SER A 491 GLU A 495 5 5 HELIX 23 23 TYR A 512 LYS A 524 1 13 HELIX 24 24 GLN A 533 THR A 539 1 7 HELIX 25 25 LYS A 552 GLU A 554 5 3 HELIX 26 26 SER A 569 CYS A 574 5 6 HELIX 27 27 LYS A 590 GLY A 606 1 17 HELIX 28 28 THR A 643 GLY A 649 1 7 HELIX 29 29 GLY A 649 LEU A 659 1 11 HELIX 30 30 ARG A 660 SER A 663 5 4 HELIX 31 31 SER A 665 THR A 672 1 8 SHEET 1 A 2 THR A 5 VAL A 11 0 SHEET 2 A 2 ARG A 36 LYS A 42 1 O ARG A 36 N VAL A 6 SHEET 1 B 4 VAL A 60 LEU A 62 0 SHEET 2 B 4 ALA A 250 ARG A 254 -1 N ALA A 250 O LEU A 62 SHEET 3 B 4 LEU A 77 PHE A 84 -1 N LYS A 78 O ALA A 253 SHEET 4 B 4 GLY A 301 LYS A 304 -1 O GLY A 301 N PHE A 84 SHEET 1 C 6 SER A 157 CYS A 158 0 SHEET 2 C 6 SER A 117 HIS A 119 1 O SER A 117 N CYS A 158 SHEET 3 C 6 VAL A 202 LYS A 206 1 O VAL A 202 N CYS A 118 SHEET 4 C 6 PHE A 94 LYS A 102 -1 N VAL A 98 O VAL A 205 SHEET 5 C 6 TYR A 223 LEU A 226 -1 O GLU A 224 N VAL A 101 SHEET 6 C 6 ARG A 232 PRO A 234 -1 O LYS A 233 N LEU A 225 SHEET 1 D 5 SER A 157 CYS A 158 0 SHEET 2 D 5 SER A 117 HIS A 119 1 O SER A 117 N CYS A 158 SHEET 3 D 5 VAL A 202 LYS A 206 1 O VAL A 202 N CYS A 118 SHEET 4 D 5 PHE A 94 LYS A 102 -1 N VAL A 98 O VAL A 205 SHEET 5 D 5 ALA A 244 PRO A 247 -1 O ALA A 244 N ALA A 97 SHEET 1 E 2 VAL A 342 LEU A 347 0 SHEET 2 E 2 ILE A 366 ALA A 371 1 O GLU A 367 N TRP A 344 SHEET 1 F 4 MET A 389 LEU A 391 0 SHEET 2 F 4 ALA A 583 SER A 586 -1 O ALA A 583 N LEU A 391 SHEET 3 F 4 VAL A 405 ASN A 411 -1 N VAL A 405 O SER A 586 SHEET 4 F 4 CYS A 634 ASP A 637 -1 O CYS A 634 N ASN A 411 SHEET 1 G 6 GLN A 481 CYS A 483 0 SHEET 2 G 6 LYS A 447 HIS A 450 1 N SER A 448 O GLN A 481 SHEET 3 G 6 VAL A 527 LYS A 531 1 N VAL A 527 O LYS A 447 SHEET 4 G 6 TYR A 425 LYS A 432 -1 N VAL A 428 O VAL A 530 SHEET 5 G 6 PHE A 556 LEU A 559 -1 N GLU A 557 O VAL A 431 SHEET 6 G 6 ARG A 565 PRO A 567 -1 O LYS A 566 N LEU A 558 SHEET 1 H 5 GLN A 481 CYS A 483 0 SHEET 2 H 5 LYS A 447 HIS A 450 1 N SER A 448 O GLN A 481 SHEET 3 H 5 VAL A 527 LYS A 531 1 N VAL A 527 O LYS A 447 SHEET 4 H 5 TYR A 425 LYS A 432 -1 N VAL A 428 O VAL A 530 SHEET 5 H 5 ALA A 577 ALA A 579 -1 O ALA A 577 N SER A 427 SSBOND 1 CYS A 9 CYS A 48 1555 1555 2.06 SSBOND 2 CYS A 19 CYS A 39 1555 1555 2.00 SSBOND 3 CYS A 118 CYS A 194 1555 1555 1.99 SSBOND 4 CYS A 137 CYS A 331 1555 1555 2.03 SSBOND 5 CYS A 158 CYS A 174 1555 1555 2.04 SSBOND 6 CYS A 161 CYS A 179 1555 1555 1.98 SSBOND 7 CYS A 171 CYS A 177 1555 1555 1.98 SSBOND 8 CYS A 227 CYS A 241 1555 1555 2.03 SSBOND 9 CYS A 339 CYS A 593 1555 1555 2.03 SSBOND 10 CYS A 345 CYS A 377 1555 1555 2.00 SSBOND 11 CYS A 355 CYS A 368 1555 1555 2.02 SSBOND 12 CYS A 402 CYS A 671 1555 1555 2.06 SSBOND 13 CYS A 417 CYS A 634 1555 1555 2.03 SSBOND 14 CYS A 449 CYS A 520 1555 1555 1.97 SSBOND 15 CYS A 473 CYS A 662 1555 1555 2.08 SSBOND 16 CYS A 483 CYS A 497 1555 1555 2.08 SSBOND 17 CYS A 494 CYS A 503 1555 1555 2.02 SSBOND 18 CYS A 560 CYS A 574 1555 1555 2.04 SSBOND 19 CYS A 612 CYS A 617 1555 1555 2.02 LINK OD1 ASP A 63 FE FE A 702 1555 1555 2.15 LINK OH TYR A 95 FE FE A 702 1555 1555 1.77 LINK OH TYR A 188 FE FE A 702 1555 1555 1.83 LINK NE2 HIS A 249 FE FE A 702 1555 1555 2.14 LINK OD1 ASP A 392 FE FE A 703 1555 1555 2.40 LINK OH TYR A 425 FE FE A 703 1555 1555 1.70 LINK OH TYR A 514 FE FE A 703 1555 1555 1.86 LINK NE2 HIS A 582 FE FE A 703 1555 1555 2.09 LINK O2 CO3 A 700 FE FE A 702 1555 1555 1.93 LINK O3 CO3 A 700 FE FE A 702 1555 1555 1.96 LINK O1 CO3 A 701 FE FE A 703 1555 1555 1.88 LINK O3 CO3 A 701 FE FE A 703 1555 1555 2.25 CISPEP 1 THR A 73 PRO A 74 0 -6.80 CISPEP 2 LYS A 144 PRO A 145 0 -5.39 SITE 1 AC1 9 ASP A 63 TYR A 95 THR A 120 ARG A 124 SITE 2 AC1 9 ALA A 126 GLY A 127 TYR A 188 HIS A 249 SITE 3 AC1 9 FE A 702 SITE 1 AC2 10 ASP A 392 TYR A 425 THR A 451 ARG A 455 SITE 2 AC2 10 THR A 456 ALA A 457 GLY A 458 TYR A 514 SITE 3 AC2 10 HIS A 582 FE A 703 SITE 1 AC3 5 ASP A 63 TYR A 95 TYR A 188 HIS A 249 SITE 2 AC3 5 CO3 A 700 SITE 1 AC4 5 ASP A 392 TYR A 425 TYR A 514 HIS A 582 SITE 2 AC4 5 CO3 A 701 SITE 1 AC5 4 ARG A 124 GLY A 187 TYR A 188 HOH A 803 CRYST1 127.190 127.190 144.850 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007862 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006904 0.00000