data_1JO2
# 
_entry.id   1JO2 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.386 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1JO2         pdb_00001jo2 10.2210/pdb1jo2/pdb 
NDB   DD0041       ?            ?                   
RCSB  RCSB013992   ?            ?                   
WWPDB D_1000013992 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2003-07-29 
2 'Structure model' 1 1 2008-04-01 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2017-10-04 
5 'Structure model' 1 4 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Refinement description'    
4 5 'Structure model' 'Data collection'           
5 5 'Structure model' 'Database references'       
6 5 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' software       
2 5 'Structure model' chem_comp_atom 
3 5 'Structure model' chem_comp_bond 
4 5 'Structure model' database_2     
5 5 'Structure model' struct_site    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 5 'Structure model' '_database_2.pdbx_DOI'                
2 5 'Structure model' '_database_2.pdbx_database_accession' 
3 5 'Structure model' '_struct_site.pdbx_auth_asym_id'      
4 5 'Structure model' '_struct_site.pdbx_auth_comp_id'      
5 5 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1JO2 
_pdbx_database_status.recvd_initial_deposition_date   2001-07-26 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Shi, K.'           1 
'Pan, B.'           2 
'Sundaralingam, M.' 3 
# 
_citation.id                        primary 
_citation.title                     
'Structure of a B-form DNA/RNA chimera (dC)(rG)d(ATCG) complexed with daunomycin at 1.5 A resolution.' 
_citation.journal_abbrev            'Acta Crystallogr.,Sect.D' 
_citation.journal_volume            59 
_citation.page_first                1377 
_citation.page_last                 1383 
_citation.year                      2003 
_citation.journal_id_ASTM           ABCRE6 
_citation.country                   DK 
_citation.journal_id_ISSN           0907-4449 
_citation.journal_id_CSD            0766 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   12876339 
_citation.pdbx_database_id_DOI      10.1107/S0907444903011788 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Shi, K.'           1 ? 
primary 'Pan, B.'           2 ? 
primary 'Sundaralingam, M.' 3 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*C)-R(P*G)-D(P*AP*TP*CP*G)-3'" 1825.217 1  ? ? ? ? 
2 non-polymer syn DAUNOMYCIN                           527.520  1  ? ? ? ? 
3 water       nat water                                18.015   40 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           'polydeoxyribonucleotide/polyribonucleotide hybrid' 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)G(DA)(DT)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGATCG 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 DAUNOMYCIN DM1 
3 water      HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DC n 
1 2 G  n 
1 3 DA n 
1 4 DT n 
1 5 DC n 
1 6 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?            'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ?            'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?            'C10 H14 N5 O7 P' 347.221 
DM1 non-polymer   . DAUNOMYCIN                           DAUNORUBICIN 'C27 H29 N O10'   527.520 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ?            'C10 H15 N2 O8 P' 322.208 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"         ?            'C10 H14 N5 O8 P' 363.221 
HOH non-polymer   . WATER                                ?            'H2 O'            18.015  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DC 1 1 1 DC C A . n 
A 1 2 G  2 2 2 G  G A . n 
A 1 3 DA 3 3 3 DA A A . n 
A 1 4 DT 4 4 4 DT T A . n 
A 1 5 DC 5 5 5 DC C A . n 
A 1 6 DG 6 6 6 DG G A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 DM1 1  7   7   DM1 DM1 A . 
C 3 HOH 1  101 101 HOH WAT A . 
C 3 HOH 2  102 102 HOH WAT A . 
C 3 HOH 3  103 103 HOH WAT A . 
C 3 HOH 4  104 104 HOH WAT A . 
C 3 HOH 5  105 105 HOH WAT A . 
C 3 HOH 6  106 106 HOH WAT A . 
C 3 HOH 7  107 107 HOH WAT A . 
C 3 HOH 8  108 108 HOH WAT A . 
C 3 HOH 9  109 109 HOH WAT A . 
C 3 HOH 10 110 110 HOH WAT A . 
C 3 HOH 11 111 111 HOH WAT A . 
C 3 HOH 12 112 112 HOH WAT A . 
C 3 HOH 13 113 113 HOH WAT A . 
C 3 HOH 14 114 114 HOH WAT A . 
C 3 HOH 15 115 115 HOH WAT A . 
C 3 HOH 16 116 116 HOH WAT A . 
C 3 HOH 17 117 117 HOH WAT A . 
C 3 HOH 18 118 118 HOH WAT A . 
C 3 HOH 19 119 119 HOH WAT A . 
C 3 HOH 20 120 120 HOH WAT A . 
C 3 HOH 21 121 121 HOH WAT A . 
C 3 HOH 22 122 122 HOH WAT A . 
C 3 HOH 23 123 123 HOH WAT A . 
C 3 HOH 24 124 124 HOH WAT A . 
C 3 HOH 25 125 125 HOH WAT A . 
C 3 HOH 26 127 127 HOH WAT A . 
C 3 HOH 27 128 128 HOH WAT A . 
C 3 HOH 28 129 129 HOH WAT A . 
C 3 HOH 29 130 130 HOH WAT A . 
C 3 HOH 30 131 131 HOH WAT A . 
C 3 HOH 31 132 132 HOH WAT A . 
C 3 HOH 32 133 133 HOH WAT A . 
C 3 HOH 33 134 134 HOH WAT A . 
C 3 HOH 34 135 135 HOH WAT A . 
C 3 HOH 35 136 136 HOH WAT A . 
C 3 HOH 36 137 137 HOH WAT A . 
C 3 HOH 37 138 138 HOH WAT A . 
C 3 HOH 38 139 139 HOH WAT A . 
C 3 HOH 39 140 140 HOH WAT A . 
C 3 HOH 40 141 141 HOH WAT A . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
SCALEPACK 'data scaling' . ? 1 
CNS       refinement     . ? 2 
# 
_cell.entry_id           1JO2 
_cell.length_a           28.05 
_cell.length_b           28.05 
_cell.length_c           53.16 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1JO2 
_symmetry.space_group_name_H-M             'P 41 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                92 
# 
_exptl.entry_id          1JO2 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.77 
_exptl_crystal.density_percent_sol   55.55 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          EVAPORATION 
_exptl_crystal_grow.temp            293 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.00 
_exptl_crystal_grow.pdbx_details    'magnesium chloride, cacodylate, MPD, pH 7.00, EVAPORATION, temperature 293K' 
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.details 
1 1 1 MgCl2      ? ? ? 
1 2 1 cacodylate ? ? ? 
1 3 1 MPD        ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           293.0 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'RIGAKU RAXIS IIC' 
_diffrn_detector.pdbx_collection_date   1996-06-24 
_diffrn_detector.details                MIRRORS 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    GRAPHITE 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.54 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        RIGAKU 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             1.54 
_diffrn_source.pdbx_wavelength_list        1.54 
# 
_reflns.entry_id                     1JO2 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   2.0 
_reflns.d_resolution_low             10.000 
_reflns.d_resolution_high            1.500 
_reflns.number_obs                   ? 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        14.6 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 1JO2 
_refine.ls_number_reflns_obs                     2699 
_refine.ls_number_reflns_all                     2778 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.000 
_refine.pdbx_data_cutoff_high_absF               2.00 
_refine.pdbx_data_cutoff_low_absF                2.00 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             10.00 
_refine.ls_d_res_high                            1.50 
_refine.ls_percent_reflns_obs                    74.3 
_refine.ls_R_factor_obs                          ? 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.198 
_refine.ls_R_factor_R_free                       0.233 
_refine.ls_R_factor_R_free_error                 0.015 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 10.00 
_refine.ls_number_reflns_R_free                  256 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               22.1 
_refine.aniso_B[1][1]                            0.12 
_refine.aniso_B[2][2]                            0.12 
_refine.aniso_B[3][3]                            -0.24 
_refine.aniso_B[1][2]                            0.00 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            0.00 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        1JO2 
_refine_analyze.Luzzati_coordinate_error_obs    0.19 
_refine_analyze.Luzzati_sigma_a_obs             0.16 
_refine_analyze.Luzzati_d_res_low_obs           5.00 
_refine_analyze.Luzzati_coordinate_error_free   0.21 
_refine_analyze.Luzzati_sigma_a_free            0.14 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      ? 
_refine_analyze.occupancy_sum_hydrogen          ? 
_refine_analyze.occupancy_sum_non_hydrogen      ? 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   121 
_refine_hist.pdbx_number_atoms_ligand         38 
_refine_hist.number_atoms_solvent             40 
_refine_hist.number_atoms_total               199 
_refine_hist.d_res_high                       1.50 
_refine_hist.d_res_low                        10.00 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
o_bond_d                0.014 ?    ? ? 'X-RAY DIFFRACTION' ? 
o_bond_d_na             ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_bond_d_prot           ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_angle_d               ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_angle_d_na            ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_angle_d_prot          ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_angle_deg             1.5   ?    ? ? 'X-RAY DIFFRACTION' ? 
o_angle_deg_na          ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_angle_deg_prot        ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_dihedral_angle_d      17.5  ?    ? ? 'X-RAY DIFFRACTION' ? 
o_dihedral_angle_d_na   ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_dihedral_angle_d_prot ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_improper_angle_d      1.94  ?    ? ? 'X-RAY DIFFRACTION' ? 
o_improper_angle_d_na   ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_improper_angle_d_prot ?     ?    ? ? 'X-RAY DIFFRACTION' ? 
o_mcbond_it             0.40  1.50 ? ? 'X-RAY DIFFRACTION' ? 
o_mcangle_it            0.69  2.00 ? ? 'X-RAY DIFFRACTION' ? 
o_scbond_it             0.00  2.00 ? ? 'X-RAY DIFFRACTION' ? 
o_scangle_it            0.00  2.50 ? ? 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   6 
_refine_ls_shell.d_res_high                       1.50 
_refine_ls_shell.d_res_low                        1.59 
_refine_ls_shell.number_reflns_R_work             112 
_refine_ls_shell.R_factor_R_work                  0.286 
_refine_ls_shell.percent_reflns_obs               21.2 
_refine_ls_shell.R_factor_R_free                  0.258 
_refine_ls_shell.R_factor_R_free_error            0.072 
_refine_ls_shell.percent_reflns_R_free            10.4 
_refine_ls_shell.number_reflns_R_free             13 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
# 
_database_PDB_matrix.entry_id          1JO2 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1JO2 
_struct.title                     
'Crystal Structure of the B-DNA Hexamer (CgATCG).Daunomycin Complex Containing a Ribose at the Intercalation Site' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1JO2 
_struct_keywords.pdbx_keywords   'DNA, RNA' 
_struct_keywords.text            'intercalation, DNA/RNA chimer, DNA, RNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1JO2 
_struct_ref.pdbx_db_accession          1JO2 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              1JO2 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 6 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             1JO2 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  6 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       6 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z            1.0000000000 0.0000000000  0.0000000000 0.0000000000  0.0000000000  
1.0000000000 0.0000000000 0.0000000000  0.0000000000 0.0000000000 1.0000000000  0.0000000000  
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.0500000000 -1.0000000000 
0.0000000000 0.0000000000 28.0500000000 0.0000000000 0.0000000000 -1.0000000000 26.5800000000 
# 
_struct_biol.id                    1 
_struct_biol.pdbx_parent_biol_id   ? 
_struct_biol.details               ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A G  2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A G  2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A G  2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A G  2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A G  2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A G  2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A G  2 N1 ? ? A DC 5 A G  2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A G  2 O6 ? ? A DC 5 A G  2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A G  2 N2 ? ? A DC 5 A G  2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A DM1 7 ? 12 'BINDING SITE FOR RESIDUE DM1 A 7' 
1   ?        ? ?   ? ? ?  ?                                  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 12 DC  A 1 ? DC  A 1   . ? 1_555 ? 
2  AC1 12 G   A 2 ? G   A 2   . ? 1_555 ? 
3  AC1 12 DA  A 3 ? DA  A 3   . ? 1_555 ? 
4  AC1 12 DT  A 4 ? DT  A 4   . ? 8_665 ? 
5  AC1 12 DC  A 5 ? DC  A 5   . ? 8_665 ? 
6  AC1 12 DG  A 6 ? DG  A 6   . ? 8_665 ? 
7  AC1 12 HOH C . ? HOH A 102 . ? 1_555 ? 
8  AC1 12 HOH C . ? HOH A 110 . ? 1_555 ? 
9  AC1 12 HOH C . ? HOH A 111 . ? 1_555 ? 
10 AC1 12 HOH C . ? HOH A 113 . ? 1_555 ? 
11 AC1 12 HOH C . ? HOH A 123 . ? 1_555 ? 
12 AC1 12 HOH C . ? HOH A 135 . ? 1_555 ? 
# 
_pdbx_validate_planes.id              1 
_pdbx_validate_planes.PDB_model_num   1 
_pdbx_validate_planes.auth_comp_id    DC 
_pdbx_validate_planes.auth_asym_id    A 
_pdbx_validate_planes.auth_seq_id     5 
_pdbx_validate_planes.PDB_ins_code    ? 
_pdbx_validate_planes.label_alt_id    ? 
_pdbx_validate_planes.rmsd            0.090 
_pdbx_validate_planes.type            'SIDE CHAIN' 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      'INTERCALATION, GROOVE BINDER' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O N N 1   
DA  P      P N N 2   
DA  OP1    O N N 3   
DA  OP2    O N N 4   
DA  "O5'"  O N N 5   
DA  "C5'"  C N N 6   
DA  "C4'"  C N R 7   
DA  "O4'"  O N N 8   
DA  "C3'"  C N S 9   
DA  "O3'"  O N N 10  
DA  "C2'"  C N N 11  
DA  "C1'"  C N R 12  
DA  N9     N Y N 13  
DA  C8     C Y N 14  
DA  N7     N Y N 15  
DA  C5     C Y N 16  
DA  C6     C Y N 17  
DA  N6     N N N 18  
DA  N1     N Y N 19  
DA  C2     C Y N 20  
DA  N3     N Y N 21  
DA  C4     C Y N 22  
DA  HOP3   H N N 23  
DA  HOP2   H N N 24  
DA  "H5'"  H N N 25  
DA  "H5''" H N N 26  
DA  "H4'"  H N N 27  
DA  "H3'"  H N N 28  
DA  "HO3'" H N N 29  
DA  "H2'"  H N N 30  
DA  "H2''" H N N 31  
DA  "H1'"  H N N 32  
DA  H8     H N N 33  
DA  H61    H N N 34  
DA  H62    H N N 35  
DA  H2     H N N 36  
DC  OP3    O N N 37  
DC  P      P N N 38  
DC  OP1    O N N 39  
DC  OP2    O N N 40  
DC  "O5'"  O N N 41  
DC  "C5'"  C N N 42  
DC  "C4'"  C N R 43  
DC  "O4'"  O N N 44  
DC  "C3'"  C N S 45  
DC  "O3'"  O N N 46  
DC  "C2'"  C N N 47  
DC  "C1'"  C N R 48  
DC  N1     N N N 49  
DC  C2     C N N 50  
DC  O2     O N N 51  
DC  N3     N N N 52  
DC  C4     C N N 53  
DC  N4     N N N 54  
DC  C5     C N N 55  
DC  C6     C N N 56  
DC  HOP3   H N N 57  
DC  HOP2   H N N 58  
DC  "H5'"  H N N 59  
DC  "H5''" H N N 60  
DC  "H4'"  H N N 61  
DC  "H3'"  H N N 62  
DC  "HO3'" H N N 63  
DC  "H2'"  H N N 64  
DC  "H2''" H N N 65  
DC  "H1'"  H N N 66  
DC  H41    H N N 67  
DC  H42    H N N 68  
DC  H5     H N N 69  
DC  H6     H N N 70  
DG  OP3    O N N 71  
DG  P      P N N 72  
DG  OP1    O N N 73  
DG  OP2    O N N 74  
DG  "O5'"  O N N 75  
DG  "C5'"  C N N 76  
DG  "C4'"  C N R 77  
DG  "O4'"  O N N 78  
DG  "C3'"  C N S 79  
DG  "O3'"  O N N 80  
DG  "C2'"  C N N 81  
DG  "C1'"  C N R 82  
DG  N9     N Y N 83  
DG  C8     C Y N 84  
DG  N7     N Y N 85  
DG  C5     C Y N 86  
DG  C6     C N N 87  
DG  O6     O N N 88  
DG  N1     N N N 89  
DG  C2     C N N 90  
DG  N2     N N N 91  
DG  N3     N N N 92  
DG  C4     C Y N 93  
DG  HOP3   H N N 94  
DG  HOP2   H N N 95  
DG  "H5'"  H N N 96  
DG  "H5''" H N N 97  
DG  "H4'"  H N N 98  
DG  "H3'"  H N N 99  
DG  "HO3'" H N N 100 
DG  "H2'"  H N N 101 
DG  "H2''" H N N 102 
DG  "H1'"  H N N 103 
DG  H8     H N N 104 
DG  H1     H N N 105 
DG  H21    H N N 106 
DG  H22    H N N 107 
DM1 C1     C Y N 108 
DM1 C2     C Y N 109 
DM1 C3     C Y N 110 
DM1 C4     C Y N 111 
DM1 O4     O N N 112 
DM1 C5     C Y N 113 
DM1 C6     C N N 114 
DM1 O6     O N N 115 
DM1 C7     C Y N 116 
DM1 C8     C Y N 117 
DM1 O8     O N N 118 
DM1 C9     C Y N 119 
DM1 C10    C N S 120 
DM1 O10    O N N 121 
DM1 C11    C N N 122 
DM1 C12    C N S 123 
DM1 O12    O N N 124 
DM1 C13    C N N 125 
DM1 O13    O N N 126 
DM1 C14    C N N 127 
DM1 C15    C N N 128 
DM1 C16    C Y N 129 
DM1 C17    C Y N 130 
DM1 O17    O N N 131 
DM1 C18    C Y N 132 
DM1 C19    C N N 133 
DM1 O19    O N N 134 
DM1 C20    C Y N 135 
DM1 C21    C N N 136 
DM1 "C1'"  C N R 137 
DM1 "C2'"  C N N 138 
DM1 "C3'"  C N S 139 
DM1 "N3'"  N N N 140 
DM1 "C4'"  C N S 141 
DM1 "O4'"  O N N 142 
DM1 "C5'"  C N S 143 
DM1 "O5'"  O N N 144 
DM1 "C6'"  C N N 145 
DM1 H1     H N N 146 
DM1 H2     H N N 147 
DM1 H3     H N N 148 
DM1 HO8    H N N 149 
DM1 H10    H N N 150 
DM1 H111   H N N 151 
DM1 H112   H N N 152 
DM1 HO12   H N N 153 
DM1 H141   H N N 154 
DM1 H142   H N N 155 
DM1 H143   H N N 156 
DM1 H151   H N N 157 
DM1 H152   H N N 158 
DM1 HO17   H N N 159 
DM1 H211   H N N 160 
DM1 H212   H N N 161 
DM1 H213   H N N 162 
DM1 "H1'"  H N N 163 
DM1 "H2'1" H N N 164 
DM1 "H2'2" H N N 165 
DM1 "H3'"  H N N 166 
DM1 "HN'1" H N N 167 
DM1 "HN'2" H N N 168 
DM1 "H4'"  H N N 169 
DM1 "HO4'" H N N 170 
DM1 "H5'"  H N N 171 
DM1 "H6'1" H N N 172 
DM1 "H6'2" H N N 173 
DM1 "H6'3" H N N 174 
DT  OP3    O N N 175 
DT  P      P N N 176 
DT  OP1    O N N 177 
DT  OP2    O N N 178 
DT  "O5'"  O N N 179 
DT  "C5'"  C N N 180 
DT  "C4'"  C N R 181 
DT  "O4'"  O N N 182 
DT  "C3'"  C N S 183 
DT  "O3'"  O N N 184 
DT  "C2'"  C N N 185 
DT  "C1'"  C N R 186 
DT  N1     N N N 187 
DT  C2     C N N 188 
DT  O2     O N N 189 
DT  N3     N N N 190 
DT  C4     C N N 191 
DT  O4     O N N 192 
DT  C5     C N N 193 
DT  C7     C N N 194 
DT  C6     C N N 195 
DT  HOP3   H N N 196 
DT  HOP2   H N N 197 
DT  "H5'"  H N N 198 
DT  "H5''" H N N 199 
DT  "H4'"  H N N 200 
DT  "H3'"  H N N 201 
DT  "HO3'" H N N 202 
DT  "H2'"  H N N 203 
DT  "H2''" H N N 204 
DT  "H1'"  H N N 205 
DT  H3     H N N 206 
DT  H71    H N N 207 
DT  H72    H N N 208 
DT  H73    H N N 209 
DT  H6     H N N 210 
G   OP3    O N N 211 
G   P      P N N 212 
G   OP1    O N N 213 
G   OP2    O N N 214 
G   "O5'"  O N N 215 
G   "C5'"  C N N 216 
G   "C4'"  C N R 217 
G   "O4'"  O N N 218 
G   "C3'"  C N S 219 
G   "O3'"  O N N 220 
G   "C2'"  C N R 221 
G   "O2'"  O N N 222 
G   "C1'"  C N R 223 
G   N9     N Y N 224 
G   C8     C Y N 225 
G   N7     N Y N 226 
G   C5     C Y N 227 
G   C6     C N N 228 
G   O6     O N N 229 
G   N1     N N N 230 
G   C2     C N N 231 
G   N2     N N N 232 
G   N3     N N N 233 
G   C4     C Y N 234 
G   HOP3   H N N 235 
G   HOP2   H N N 236 
G   "H5'"  H N N 237 
G   "H5''" H N N 238 
G   "H4'"  H N N 239 
G   "H3'"  H N N 240 
G   "HO3'" H N N 241 
G   "H2'"  H N N 242 
G   "HO2'" H N N 243 
G   "H1'"  H N N 244 
G   H8     H N N 245 
G   H1     H N N 246 
G   H21    H N N 247 
G   H22    H N N 248 
HOH O      O N N 249 
HOH H1     H N N 250 
HOH H2     H N N 251 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DM1 C1    C2     doub Y N 113 
DM1 C1    C20    sing Y N 114 
DM1 C1    H1     sing N N 115 
DM1 C2    C3     sing Y N 116 
DM1 C2    H2     sing N N 117 
DM1 C3    C4     doub Y N 118 
DM1 C3    H3     sing N N 119 
DM1 C4    O4     sing N N 120 
DM1 C4    C5     sing Y N 121 
DM1 O4    C21    sing N N 122 
DM1 C5    C6     sing N N 123 
DM1 C5    C20    doub Y N 124 
DM1 C6    O6     doub N N 125 
DM1 C6    C7     sing N N 126 
DM1 C7    C8     doub Y N 127 
DM1 C7    C18    sing Y N 128 
DM1 C8    O8     sing N N 129 
DM1 C8    C9     sing Y N 130 
DM1 O8    HO8    sing N N 131 
DM1 C9    C10    sing N N 132 
DM1 C9    C16    doub Y N 133 
DM1 C10   O10    sing N N 134 
DM1 C10   C11    sing N N 135 
DM1 C10   H10    sing N N 136 
DM1 O10   "C1'"  sing N N 137 
DM1 C11   C12    sing N N 138 
DM1 C11   H111   sing N N 139 
DM1 C11   H112   sing N N 140 
DM1 C12   O12    sing N N 141 
DM1 C12   C13    sing N N 142 
DM1 C12   C15    sing N N 143 
DM1 O12   HO12   sing N N 144 
DM1 C13   O13    doub N N 145 
DM1 C13   C14    sing N N 146 
DM1 C14   H141   sing N N 147 
DM1 C14   H142   sing N N 148 
DM1 C14   H143   sing N N 149 
DM1 C15   C16    sing N N 150 
DM1 C15   H151   sing N N 151 
DM1 C15   H152   sing N N 152 
DM1 C16   C17    sing Y N 153 
DM1 C17   O17    sing N N 154 
DM1 C17   C18    doub Y N 155 
DM1 O17   HO17   sing N N 156 
DM1 C18   C19    sing N N 157 
DM1 C19   O19    doub N N 158 
DM1 C19   C20    sing N N 159 
DM1 C21   H211   sing N N 160 
DM1 C21   H212   sing N N 161 
DM1 C21   H213   sing N N 162 
DM1 "C1'" "C2'"  sing N N 163 
DM1 "C1'" "O5'"  sing N N 164 
DM1 "C1'" "H1'"  sing N N 165 
DM1 "C2'" "C3'"  sing N N 166 
DM1 "C2'" "H2'1" sing N N 167 
DM1 "C2'" "H2'2" sing N N 168 
DM1 "C3'" "N3'"  sing N N 169 
DM1 "C3'" "C4'"  sing N N 170 
DM1 "C3'" "H3'"  sing N N 171 
DM1 "N3'" "HN'1" sing N N 172 
DM1 "N3'" "HN'2" sing N N 173 
DM1 "C4'" "O4'"  sing N N 174 
DM1 "C4'" "C5'"  sing N N 175 
DM1 "C4'" "H4'"  sing N N 176 
DM1 "O4'" "HO4'" sing N N 177 
DM1 "C5'" "O5'"  sing N N 178 
DM1 "C5'" "C6'"  sing N N 179 
DM1 "C5'" "H5'"  sing N N 180 
DM1 "C6'" "H6'1" sing N N 181 
DM1 "C6'" "H6'2" sing N N 182 
DM1 "C6'" "H6'3" sing N N 183 
DT  OP3   P      sing N N 184 
DT  OP3   HOP3   sing N N 185 
DT  P     OP1    doub N N 186 
DT  P     OP2    sing N N 187 
DT  P     "O5'"  sing N N 188 
DT  OP2   HOP2   sing N N 189 
DT  "O5'" "C5'"  sing N N 190 
DT  "C5'" "C4'"  sing N N 191 
DT  "C5'" "H5'"  sing N N 192 
DT  "C5'" "H5''" sing N N 193 
DT  "C4'" "O4'"  sing N N 194 
DT  "C4'" "C3'"  sing N N 195 
DT  "C4'" "H4'"  sing N N 196 
DT  "O4'" "C1'"  sing N N 197 
DT  "C3'" "O3'"  sing N N 198 
DT  "C3'" "C2'"  sing N N 199 
DT  "C3'" "H3'"  sing N N 200 
DT  "O3'" "HO3'" sing N N 201 
DT  "C2'" "C1'"  sing N N 202 
DT  "C2'" "H2'"  sing N N 203 
DT  "C2'" "H2''" sing N N 204 
DT  "C1'" N1     sing N N 205 
DT  "C1'" "H1'"  sing N N 206 
DT  N1    C2     sing N N 207 
DT  N1    C6     sing N N 208 
DT  C2    O2     doub N N 209 
DT  C2    N3     sing N N 210 
DT  N3    C4     sing N N 211 
DT  N3    H3     sing N N 212 
DT  C4    O4     doub N N 213 
DT  C4    C5     sing N N 214 
DT  C5    C7     sing N N 215 
DT  C5    C6     doub N N 216 
DT  C7    H71    sing N N 217 
DT  C7    H72    sing N N 218 
DT  C7    H73    sing N N 219 
DT  C6    H6     sing N N 220 
G   OP3   P      sing N N 221 
G   OP3   HOP3   sing N N 222 
G   P     OP1    doub N N 223 
G   P     OP2    sing N N 224 
G   P     "O5'"  sing N N 225 
G   OP2   HOP2   sing N N 226 
G   "O5'" "C5'"  sing N N 227 
G   "C5'" "C4'"  sing N N 228 
G   "C5'" "H5'"  sing N N 229 
G   "C5'" "H5''" sing N N 230 
G   "C4'" "O4'"  sing N N 231 
G   "C4'" "C3'"  sing N N 232 
G   "C4'" "H4'"  sing N N 233 
G   "O4'" "C1'"  sing N N 234 
G   "C3'" "O3'"  sing N N 235 
G   "C3'" "C2'"  sing N N 236 
G   "C3'" "H3'"  sing N N 237 
G   "O3'" "HO3'" sing N N 238 
G   "C2'" "O2'"  sing N N 239 
G   "C2'" "C1'"  sing N N 240 
G   "C2'" "H2'"  sing N N 241 
G   "O2'" "HO2'" sing N N 242 
G   "C1'" N9     sing N N 243 
G   "C1'" "H1'"  sing N N 244 
G   N9    C8     sing Y N 245 
G   N9    C4     sing Y N 246 
G   C8    N7     doub Y N 247 
G   C8    H8     sing N N 248 
G   N7    C5     sing Y N 249 
G   C5    C6     sing N N 250 
G   C5    C4     doub Y N 251 
G   C6    O6     doub N N 252 
G   C6    N1     sing N N 253 
G   N1    C2     sing N N 254 
G   N1    H1     sing N N 255 
G   C2    N2     sing N N 256 
G   C2    N3     doub N N 257 
G   N2    H21    sing N N 258 
G   N2    H22    sing N N 259 
G   N3    C4     sing N N 260 
HOH O     H1     sing N N 261 
HOH O     H2     sing N N 262 
# 
_ndb_struct_conf_na.entry_id   1JO2 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1 1_555 A DG 6 8_665 0.211  -0.123 -0.021 8.887   1.882  -0.597 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 
1 A G  2 1_555 A DC 5 8_665 -0.201 0.013  -0.430 -20.355 4.981  2.014  2 A_G2:DC5_A  A 2 ? A 5 ? 19 1 
1 A DA 3 1_555 A DT 4 8_665 0.012  -0.130 0.029  -9.746  -1.771 1.760  3 A_DA3:DT4_A A 3 ? A 4 ? 20 1 
1 A DT 4 1_555 A DA 3 8_665 -0.012 -0.130 0.029  9.746   -1.771 1.760  4 A_DT4:DA3_A A 4 ? A 3 ? 20 1 
1 A DC 5 1_555 A G  2 8_665 0.201  0.013  -0.430 20.355  4.981  2.014  5 A_DC5:G2_A  A 5 ? A 2 ? 19 1 
1 A DG 6 1_555 A DC 1 8_665 -0.211 -0.123 -0.021 -8.887  1.882  -0.597 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 A DG 6 8_665 A G  2 1_555 A DC 5 8_665 1.366  1.166  7.200 1.577  -4.423 33.587 3.555  -1.788 7.048 -7.608 -2.713 
33.904 1 AA_DC1G2:DC5DG6_AA  A 1 ? A 6 ? A 2 ? A 5 ? 
1 A G  2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -1.363 0.369  3.180 -4.255 0.382  31.959 0.597  1.697  3.333 0.691  7.686  
32.236 2 AA_G2DA3:DT4DC5_AA  A 2 ? A 5 ? A 3 ? A 4 ? 
1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000  -0.595 2.974 0.000  4.041  32.292 -1.697 0.000  2.880 7.230  0.000  
32.537 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ? 
1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A G  2 8_665 1.363  0.369  3.180 4.256  0.382  31.959 0.597  -1.697 3.333 0.690  -7.686 
32.236 4 AA_DT4DC5:G2DA3_AA  A 4 ? A 3 ? A 5 ? A 2 ? 
1 A DC 5 1_555 A G  2 8_665 A DG 6 1_555 A DC 1 8_665 -1.366 1.166  7.200 -1.577 -4.423 33.587 3.555  1.788  7.048 -7.608 2.713  
33.904 5 AA_DC5DG6:DC1G2_AA  A 5 ? A 2 ? A 6 ? A 1 ? 
# 
_atom_sites.entry_id                    1JO2 
_atom_sites.fract_transf_matrix[1][1]   0.035651 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.035651 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.018811 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_