data_1JOH # _entry.id 1JOH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JOH pdb_00001joh 10.2210/pdb1joh/pdb WWPDB D_1000174352 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-01-20 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2020-03-04 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Derived calculations' 11 6 'Structure model' Other 12 6 'Structure model' 'Refinement description' 13 6 'Structure model' 'Structure summary' 14 7 'Structure model' 'Data collection' 15 7 'Structure model' 'Database references' 16 7 'Structure model' 'Derived calculations' 17 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' chem_comp 2 6 'Structure model' pdbx_database_status 3 6 'Structure model' refine 4 6 'Structure model' reflns 5 6 'Structure model' struct_conn 6 7 'Structure model' chem_comp_atom 7 7 'Structure model' chem_comp_bond 8 7 'Structure model' database_2 9 7 'Structure model' pdbx_initial_refinement_model 10 7 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_chem_comp.pdbx_synonyms' 2 6 'Structure model' '_pdbx_database_status.process_site' 3 6 'Structure model' '_refine.ls_R_factor_obs' 4 6 'Structure model' '_refine.ls_number_reflns_obs' 5 6 'Structure model' '_reflns.pdbx_Rmerge_I_obs' 6 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 7 'Structure model' '_database_2.pdbx_DOI' 8 7 'Structure model' '_database_2.pdbx_database_accession' 9 7 'Structure model' '_struct_conn.pdbx_dist_value' 10 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 7 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 7 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 7 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 7 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JOH _pdbx_database_status.recvd_initial_deposition_date 1997-10-11 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1M24 unspecified 'CRYSTAL STRUCTURE OF THE PEPTAIBOL TRICHOTOXIN_A50E' PDB 1R9U unspecified 'SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB IN METHANOL' PDB 1DLZ unspecified 'SOLUTION STRUCTURE OF THE PEPTIABOL ZERVAMICIN IIB' PDB 1IH9 unspecified 'SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB BOUND TO DPC MICELLES' PDB 1GQ0 unspecified 'SOLUTION STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I' PDB 1AMT unspecified 'CRYSTAL STRUCTURE OF THE PEPTAIBOL ALAMETHICIN' PDB 1EE7 unspecified 'SOLUTION STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES' PDB 1OB7 unspecified 'CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL C' PDB 1OB6 unspecified 'CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL B' PDB 1OB4 unspecified 'CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL A' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Snook, C.F.' 1 'Wallace, B.A.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The Structure and Function of Antiamoebin I, a Proline-Rich Membrane-Active Polypeptide.' Structure 6 783 ? 1998 STRUE6 UK 0969-2126 2005 ? 9655831 '10.1016/S0969-2126(98)00079-3' 1 'The Molecular-Replacement Solution of an Intermediate-Sized Helical Polypeptide, Antiamoebin I.' 'Acta Crystallogr.,Sect.D' 55 1539 ? 1999 ABCRE6 DK 0907-4449 0766 ? 10489449 10.1107/S0907444999007921 2 'The Structure and Function of Antiamoebin I, a Membrane-Active Peptide' 'Thesis, University of London' ? ? ? 1997 ? ? ? ? 'London : University of London (Thesis)' ? ? 3 ;Molecular Redundancy and Protein Crystallography : X-Ray Structure Analysis of Antiamoebin I, Bovine Pancreatic Polypeptide and Human Serum Amyloid P Component ; 'Thesis, University of London' ? ? ? 1988 ? ? ? ? 'London : University of London (Thesis)' ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Snook, C.F.' 1 ? primary 'Woolley, G.A.' 2 ? primary 'Oliva, G.' 3 ? primary 'Pattabhi, V.' 4 ? primary 'Wood, S.F.' 5 ? primary 'Blundell, T.L.' 6 ? primary 'Wallace, B.A.' 7 ? 1 'Snook, C.F.' 8 ? 1 'Wallace, B.A.' 9 ? 2 'Snook, C.F.' 10 ? 3 'Oliva, G.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'ANTIAMOEBIN I' 1654.991 2 ? ? ? ? 2 non-polymer syn METHANOL 32.042 23 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)F(AIB)(AIB)(AIB)(DIV)GL(AIB)(AIB)(HYP)Q(DIV)(HYP)(AIB)P(PHL)' _entity_poly.pdbx_seq_one_letter_code_can XFAAAVGLAAPQVPAPF _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name METHANOL _pdbx_entity_nonpoly.comp_id MOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PHE n 1 3 AIB n 1 4 AIB n 1 5 AIB n 1 6 DIV n 1 7 GLY n 1 8 LEU n 1 9 AIB n 1 10 AIB n 1 11 HYP n 1 12 GLN n 1 13 DIV n 1 14 HYP n 1 15 AIB n 1 16 PRO n 1 17 PHL n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific EMERICELLOPSIS _entity_src_nat.pdbx_ncbi_taxonomy_id 45244 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 AIB 'L-peptide linking' n 'ALPHA-AMINOISOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 DIV 'D-peptide linking' . D-ISOVALINE ? 'C5 H11 N O2' 117.146 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MOH non-polymer . METHANOL ? 'C H4 O' 32.042 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PHL 'L-peptide linking' n L-PHENYLALANINOL 'bound form of Phenylalaninal' 'C9 H13 N O' 151.206 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 PHE 2 1 1 PHE PHE A . n A 1 3 AIB 3 2 2 AIB AIB A . n A 1 4 AIB 4 3 3 AIB AIB A . n A 1 5 AIB 5 4 4 AIB AIB A . n A 1 6 DIV 6 5 5 DIV DIV A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 AIB 9 8 8 AIB AIB A . n A 1 10 AIB 10 9 9 AIB AIB A . n A 1 11 HYP 11 10 10 HYP HYP A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 DIV 13 12 12 DIV DIV A . n A 1 14 HYP 14 13 13 HYP HYP A . n A 1 15 AIB 15 14 14 AIB AIB A . n A 1 16 PRO 16 15 15 PRO PRO A . n A 1 17 PHL 17 16 16 PHL PHL A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 PHE 2 1 1 PHE PHE B . n B 1 3 AIB 3 2 2 AIB AIB B . n B 1 4 AIB 4 3 3 AIB AIB B . n B 1 5 AIB 5 4 4 AIB AIB B . n B 1 6 DIV 6 5 5 DIV DIV B . n B 1 7 GLY 7 6 6 GLY GLY B . n B 1 8 LEU 8 7 7 LEU LEU B . n B 1 9 AIB 9 8 8 AIB AIB B . n B 1 10 AIB 10 9 9 AIB AIB B . n B 1 11 HYP 11 10 10 HYP HYP B . n B 1 12 GLN 12 11 11 GLN GLN B . n B 1 13 DIV 13 12 12 DIV DIV B . n B 1 14 HYP 14 13 13 HYP HYP B . n B 1 15 AIB 15 14 14 AIB AIB B . n B 1 16 PRO 16 15 15 PRO PRO B . n B 1 17 PHL 17 16 16 PHL PHL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MOH 1 18 18 MOH MOH A . D 2 MOH 1 19 19 MOH MOH A . E 2 MOH 1 20 20 MOH MOH A . F 2 MOH 1 21 21 MOH MOH A . G 2 MOH 1 22 22 MOH MOH A . H 2 MOH 1 23 23 MOH MOH A . I 2 MOH 1 24 24 MOH MOH A . J 2 MOH 1 25 25 MOH MOH A . K 2 MOH 1 26 26 MOH MOH A . L 2 MOH 1 27 27 MOH MOH A . M 2 MOH 1 28 28 MOH MOH A . N 2 MOH 1 18 18 MOH MOH B . O 2 MOH 1 19 19 MOH MOH B . P 2 MOH 1 20 20 MOH MOH B . Q 2 MOH 1 21 21 MOH MOH B . R 2 MOH 1 22 22 MOH MOH B . S 2 MOH 1 23 23 MOH MOH B . T 2 MOH 1 24 24 MOH MOH B . U 2 MOH 1 25 25 MOH MOH B . V 2 MOH 1 26 26 MOH MOH B . W 2 MOH 1 27 27 MOH MOH B . X 2 MOH 1 28 28 MOH MOH B . Y 2 MOH 1 29 29 MOH MOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A MOH 23 ? C ? H MOH 1 C 2 1 N 1 A MOH 24 ? C ? I MOH 1 C 3 1 N 1 A MOH 25 ? C ? J MOH 1 C 4 1 N 1 A MOH 26 ? C ? K MOH 1 C 5 1 N 1 A MOH 28 ? C ? M MOH 1 C 6 1 N 1 B MOH 20 ? C ? P MOH 1 C 7 1 N 1 B MOH 21 ? C ? Q MOH 1 C 8 1 N 1 B MOH 22 ? C ? R MOH 1 C 9 1 N 1 B MOH 24 ? C ? T MOH 1 C 10 1 N 1 B MOH 25 ? C ? U MOH 1 C 11 1 N 1 B MOH 26 ? C ? V MOH 1 C 12 1 N 1 B MOH 27 ? C ? W MOH 1 C 13 1 N 1 B MOH 28 ? C ? X MOH 1 C 14 1 N 1 B MOH 29 ? C ? Y MOH 1 C # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language SHELXL-93 'model building' . ? 1 ? ? ? ? SHELXL-93 refinement . ? 2 ? ? ? ? SHELXL-93 phasing . ? 3 ? ? ? ? # _cell.entry_id 1JOH _cell.length_a 26.530 _cell.length_b 28.820 _cell.length_c 9.060 _cell.angle_alpha 88.90 _cell.angle_beta 96.64 _cell.angle_gamma 123.85 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JOH _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1JOH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.71 _exptl_crystal.density_percent_sol 28.00 _exptl_crystal.description 'USED NORMALISED STRUCTURE FACTORS' _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type HILGER-WATTS _diffrn_detector.pdbx_collection_date 1986 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1JOH _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.000 _reflns.d_resolution_high 1.200 _reflns.number_obs 6715 _reflns.number_all ? _reflns.percent_possible_obs 93.7 _reflns.pdbx_Rmerge_I_obs 0.0120000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.5000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.000 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1JOH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4359 _refine.ls_number_reflns_all 4359 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 95.4 _refine.ls_R_factor_obs 0.156 _refine.ls_R_factor_all 0.156 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 1074 _refine.ls_number_restraints 982 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;REFINEMENT STARTED USING 10.0 TO 2.5A AND DATA CUT-OFF AT 2 SIGMA IN X-PLOR. HIGH RESOLUTION LIMIT INCREASED TO 2.0A, LOW RESOLUTION DECREASED TO 25.0A AND DATA CUT-OFF DECREASED TO 0.0 SIGMA AT 2.0A RESOLUTION. RESOLUTION INCREASED FROM 2.0A TO 1.4A WITH ALL DATA USING SHELXL-93. REFINEMENT CEASED AFTER RESIDUES 1 TO 5 IN B-CHAIN IDENTIFIED AS DISORDERED IN DENSITY. ; _refine.pdbx_starting_model 'RESIDUES 6 - 16 OF LEU1-ZERVAMICIN WITH ALL NON -EQUIVALENT SIDE-CHAINS TRIMMED TO ALA.' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case 'HETATM DATA FROM CCSD' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1JOH _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen 268.00 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 238 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 268 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.036 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 3.152 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.016 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.022 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.065 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1JOH _pdbx_refine.R_factor_all_no_cutoff 0.156 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.136 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 3567 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] 0.000000 _struct_ncs_oper.matrix[1][2] 1.000000 _struct_ncs_oper.matrix[1][3] 0.000000 _struct_ncs_oper.matrix[2][1] 1.000000 _struct_ncs_oper.matrix[2][2] 0.000000 _struct_ncs_oper.matrix[2][3] 0.000000 _struct_ncs_oper.matrix[3][1] 0.000000 _struct_ncs_oper.matrix[3][2] 0.000000 _struct_ncs_oper.matrix[3][3] -1.000000 _struct_ncs_oper.vector[1] 0.00000 _struct_ncs_oper.vector[2] 0.00000 _struct_ncs_oper.vector[3] 115.46000 # _database_PDB_matrix.entry_id 1JOH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1JOH _struct.title 'THE STRUCTURE OF ANTIAMOEBIN I, A MEMBRANE-ACTIVE PEPTIDE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JOH _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIAMOEBIN I, PEPTAIBOL, ANTIBACTERIAL, ANTIFUNGAL, ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 2 ? V N N 2 ? W N N 2 ? X N N 2 ? Y N N 2 ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00945 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00945 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JOH A 1 ? 17 ? NOR00945 0 ? 16 ? 0 16 2 1 1JOH B 1 ? 17 ? NOR00945 0 ? 16 ? 0 16 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,K,L,M 2 1 B,N,O,P,Q,R,S,T,U,V,W,X,Y # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 2 ? HYP A 11 ? PHE A 1 HYP A 10 1 ? 10 HELX_P HELX_P2 2 AIB B 3 ? HYP B 11 ? AIB B 2 HYP B 10 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PHE 2 N ? ? A ACE 0 A PHE 1 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale2 covale both ? A PHE 2 C ? ? ? 1_555 A AIB 3 N ? ? A PHE 1 A AIB 2 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale3 covale both ? A AIB 3 C ? ? ? 1_555 A AIB 4 N ? ? A AIB 2 A AIB 3 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A AIB 4 C ? ? ? 1_555 A AIB 5 N ? ? A AIB 3 A AIB 4 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale5 covale both ? A AIB 5 C ? ? ? 1_555 A DIV 6 N ? ? A AIB 4 A DIV 5 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale6 covale both ? A DIV 6 C ? ? ? 1_555 A GLY 7 N ? ? A DIV 5 A GLY 6 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale7 covale both ? A LEU 8 C ? ? ? 1_555 A AIB 9 N ? ? A LEU 7 A AIB 8 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale8 covale both ? A AIB 9 C ? ? ? 1_555 A AIB 10 N ? ? A AIB 8 A AIB 9 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale9 covale both ? A AIB 10 C ? ? ? 1_555 A HYP 11 N ? ? A AIB 9 A HYP 10 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale10 covale both ? A HYP 11 C ? ? ? 1_555 A GLN 12 N ? ? A HYP 10 A GLN 11 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale11 covale both ? A GLN 12 C ? ? ? 1_555 A DIV 13 N ? ? A GLN 11 A DIV 12 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale12 covale both ? A DIV 13 C ? ? ? 1_555 A HYP 14 N ? ? A DIV 12 A HYP 13 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale13 covale both ? A HYP 14 C ? ? ? 1_555 A AIB 15 N ? ? A HYP 13 A AIB 14 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale14 covale both ? A AIB 15 C ? ? ? 1_555 A PRO 16 N ? ? A AIB 14 A PRO 15 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale15 covale both ? A PRO 16 C ? ? ? 1_555 A PHL 17 N ? ? A PRO 15 A PHL 16 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale16 covale none ? A PHL 17 O ? ? ? 1_554 C MOH . C ? ? A PHL 16 A MOH 18 1_555 ? ? ? ? ? ? ? 1.760 ? ? covale17 covale none ? A PHL 17 O ? ? ? 1_555 C MOH . C ? ? A PHL 16 A MOH 18 1_556 ? ? ? ? ? ? ? 1.760 ? ? covale18 covale none ? L MOH . O ? ? ? 1_555 O MOH . C ? ? A MOH 27 B MOH 19 1_555 ? ? ? ? ? ? ? 1.844 ? ? covale19 covale both ? B ACE 1 C ? ? ? 1_555 B PHE 2 N ? ? B ACE 0 B PHE 1 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale20 covale both ? B PHE 2 C ? ? ? 1_555 B AIB 3 N ? ? B PHE 1 B AIB 2 1_555 ? ? ? ? ? ? ? 1.289 ? ? covale21 covale both ? B AIB 3 C ? ? ? 1_555 B AIB 4 N ? ? B AIB 2 B AIB 3 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale22 covale both ? B AIB 4 C ? ? ? 1_555 B AIB 5 N ? ? B AIB 3 B AIB 4 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale23 covale both ? B AIB 5 C ? ? ? 1_555 B DIV 6 N ? ? B AIB 4 B DIV 5 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale24 covale both ? B DIV 6 C ? ? ? 1_555 B GLY 7 N ? ? B DIV 5 B GLY 6 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale25 covale both ? B LEU 8 C ? ? ? 1_555 B AIB 9 N ? ? B LEU 7 B AIB 8 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale26 covale both ? B AIB 9 C ? ? ? 1_555 B AIB 10 N ? ? B AIB 8 B AIB 9 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale27 covale both ? B AIB 10 C ? ? ? 1_555 B HYP 11 N ? ? B AIB 9 B HYP 10 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale28 covale both ? B HYP 11 C ? ? ? 1_555 B GLN 12 N ? ? B HYP 10 B GLN 11 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale29 covale both ? B GLN 12 C ? ? ? 1_555 B DIV 13 N ? ? B GLN 11 B DIV 12 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale30 covale both ? B DIV 13 C ? ? ? 1_555 B HYP 14 N ? ? B DIV 12 B HYP 13 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale31 covale both ? B HYP 14 C ? ? ? 1_555 B AIB 15 N ? ? B HYP 13 B AIB 14 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale32 covale both ? B AIB 15 C ? ? ? 1_555 B PRO 16 N ? ? B AIB 14 B PRO 15 1_555 ? ? ? ? ? ? ? 1.301 ? ? covale33 covale both ? B PRO 16 C ? ? ? 1_555 B PHL 17 N ? ? B PRO 15 B PHL 16 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale34 covale none ? B PHL 17 CG ? ? ? 1_555 S MOH . O ? ? B PHL 16 B MOH 23 1_555 ? ? ? ? ? ? ? 1.649 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR CHAIN A OF ANTIAMOEBIN I' AC2 Software ? ? ? ? 9 'BINDING SITE FOR CHAIN B OF ANTIAMOEBIN I' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 PHE B 2 ? PHE B 1 . ? 1_446 ? 2 AC1 9 PHE B 2 ? PHE B 1 . ? 1_445 ? 3 AC1 9 GLY B 7 ? GLY B 6 . ? 1_555 ? 4 AC1 9 LEU B 8 ? LEU B 7 . ? 1_556 ? 5 AC1 9 AIB B 10 ? AIB B 9 . ? 1_555 ? 6 AC1 9 HYP B 11 ? HYP B 10 . ? 1_556 ? 7 AC1 9 HYP B 11 ? HYP B 10 . ? 1_555 ? 8 AC1 9 GLN B 12 ? GLN B 11 . ? 1_556 ? 9 AC1 9 PHL B 17 ? PHL B 16 . ? 1_455 ? 10 AC2 9 DIV A 6 ? DIV A 5 . ? 1_664 ? 11 AC2 9 GLY A 7 ? GLY A 6 . ? 1_554 ? 12 AC2 9 LEU A 8 ? LEU A 7 . ? 1_555 ? 13 AC2 9 AIB A 9 ? AIB A 8 . ? 1_665 ? 14 AC2 9 AIB A 10 ? AIB A 9 . ? 1_554 ? 15 AC2 9 HYP A 11 ? HYP A 10 . ? 1_555 ? 16 AC2 9 HYP A 11 ? HYP A 10 . ? 1_554 ? 17 AC2 9 GLN A 12 ? GLN A 11 . ? 1_555 ? 18 AC2 9 PHL A 17 ? PHL A 16 . ? 1_655 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CB B PHL 16 ? ? O B MOH 23 ? ? 0.81 2 1 CA B PHL 16 ? ? O B MOH 23 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A MOH 27 ? ? 1_555 O B MOH 28 ? ? 1_554 1.99 2 1 C A PHL 16 ? ? 1_555 C A MOH 18 ? ? 1_556 2.10 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 PHE _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 AIB _pdbx_validate_rmsd_angle.auth_seq_id_2 2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 AIB _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 142.04 _pdbx_validate_rmsd_angle.angle_target_value 121.70 _pdbx_validate_rmsd_angle.angle_deviation 20.34 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id AIB _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 2 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -137.07 _pdbx_validate_torsion.psi -53.93 # _pdbx_molecule_features.prd_id PRD_000161 _pdbx_molecule_features.name 'Antiamoebin 1' _pdbx_molecule_features.type Peptaibol _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ANTIAMOEBIN I IS A HEXADECAMERIC HELICAL PEPTIDE. THE N-TERM IS ACETYLATED (RESIDUE 0) ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000161 A 2 PRD_000161 B # _pdbx_entry_details.entry_id 1JOH _pdbx_entry_details.compound_details ;ANTIAMOEBIN I IS LINEAR PEPTIDE, A MEMBER OF THE PEPTAIBOL FAMILY OF MEMBRANE CHANNEL FORMING PEPTIDES. HERE, ANTIAMOEBIN I IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 AIB N N N N 8 AIB CA C N N 9 AIB C C N N 10 AIB O O N N 11 AIB OXT O N N 12 AIB CB1 C N N 13 AIB CB2 C N N 14 AIB H H N N 15 AIB H2 H N N 16 AIB HXT H N N 17 AIB HB11 H N N 18 AIB HB12 H N N 19 AIB HB13 H N N 20 AIB HB21 H N N 21 AIB HB22 H N N 22 AIB HB23 H N N 23 DIV N N N N 24 DIV CA C N R 25 DIV CB1 C N N 26 DIV CG1 C N N 27 DIV CB2 C N N 28 DIV C C N N 29 DIV O O N N 30 DIV OXT O N N 31 DIV H H N N 32 DIV H2 H N N 33 DIV HB11 H N N 34 DIV HB12 H N N 35 DIV HG11 H N N 36 DIV HG12 H N N 37 DIV HG13 H N N 38 DIV HB21 H N N 39 DIV HB22 H N N 40 DIV HB23 H N N 41 DIV HXT H N N 42 GLN N N N N 43 GLN CA C N S 44 GLN C C N N 45 GLN O O N N 46 GLN CB C N N 47 GLN CG C N N 48 GLN CD C N N 49 GLN OE1 O N N 50 GLN NE2 N N N 51 GLN OXT O N N 52 GLN H H N N 53 GLN H2 H N N 54 GLN HA H N N 55 GLN HB2 H N N 56 GLN HB3 H N N 57 GLN HG2 H N N 58 GLN HG3 H N N 59 GLN HE21 H N N 60 GLN HE22 H N N 61 GLN HXT H N N 62 GLY N N N N 63 GLY CA C N N 64 GLY C C N N 65 GLY O O N N 66 GLY OXT O N N 67 GLY H H N N 68 GLY H2 H N N 69 GLY HA2 H N N 70 GLY HA3 H N N 71 GLY HXT H N N 72 HYP N N N N 73 HYP CA C N S 74 HYP C C N N 75 HYP O O N N 76 HYP CB C N N 77 HYP CG C N R 78 HYP CD C N N 79 HYP OD1 O N N 80 HYP OXT O N N 81 HYP H H N N 82 HYP HA H N N 83 HYP HB2 H N N 84 HYP HB3 H N N 85 HYP HG H N N 86 HYP HD22 H N N 87 HYP HD23 H N N 88 HYP HD1 H N N 89 HYP HXT H N N 90 LEU N N N N 91 LEU CA C N S 92 LEU C C N N 93 LEU O O N N 94 LEU CB C N N 95 LEU CG C N N 96 LEU CD1 C N N 97 LEU CD2 C N N 98 LEU OXT O N N 99 LEU H H N N 100 LEU H2 H N N 101 LEU HA H N N 102 LEU HB2 H N N 103 LEU HB3 H N N 104 LEU HG H N N 105 LEU HD11 H N N 106 LEU HD12 H N N 107 LEU HD13 H N N 108 LEU HD21 H N N 109 LEU HD22 H N N 110 LEU HD23 H N N 111 LEU HXT H N N 112 MOH C C N N 113 MOH O O N N 114 MOH H1 H N N 115 MOH H2 H N N 116 MOH H3 H N N 117 MOH HO H N N 118 PHE N N N N 119 PHE CA C N S 120 PHE C C N N 121 PHE O O N N 122 PHE CB C N N 123 PHE CG C Y N 124 PHE CD1 C Y N 125 PHE CD2 C Y N 126 PHE CE1 C Y N 127 PHE CE2 C Y N 128 PHE CZ C Y N 129 PHE OXT O N N 130 PHE H H N N 131 PHE H2 H N N 132 PHE HA H N N 133 PHE HB2 H N N 134 PHE HB3 H N N 135 PHE HD1 H N N 136 PHE HD2 H N N 137 PHE HE1 H N N 138 PHE HE2 H N N 139 PHE HZ H N N 140 PHE HXT H N N 141 PHL N N N N 142 PHL CA C N S 143 PHL C C N N 144 PHL O O N N 145 PHL CB C N N 146 PHL CG C Y N 147 PHL CD1 C Y N 148 PHL CD2 C Y N 149 PHL CE1 C Y N 150 PHL CE2 C Y N 151 PHL CZ C Y N 152 PHL H H N N 153 PHL H2 H N N 154 PHL HA H N N 155 PHL HC1 H N N 156 PHL HC2 H N N 157 PHL HO H N N 158 PHL HB2 H N N 159 PHL HB3 H N N 160 PHL HD1 H N N 161 PHL HD2 H N N 162 PHL HE1 H N N 163 PHL HE2 H N N 164 PHL HZ H N N 165 PRO N N N N 166 PRO CA C N S 167 PRO C C N N 168 PRO O O N N 169 PRO CB C N N 170 PRO CG C N N 171 PRO CD C N N 172 PRO OXT O N N 173 PRO H H N N 174 PRO HA H N N 175 PRO HB2 H N N 176 PRO HB3 H N N 177 PRO HG2 H N N 178 PRO HG3 H N N 179 PRO HD2 H N N 180 PRO HD3 H N N 181 PRO HXT H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 AIB N CA sing N N 7 AIB N H sing N N 8 AIB N H2 sing N N 9 AIB CA C sing N N 10 AIB CA CB1 sing N N 11 AIB CA CB2 sing N N 12 AIB C O doub N N 13 AIB C OXT sing N N 14 AIB OXT HXT sing N N 15 AIB CB1 HB11 sing N N 16 AIB CB1 HB12 sing N N 17 AIB CB1 HB13 sing N N 18 AIB CB2 HB21 sing N N 19 AIB CB2 HB22 sing N N 20 AIB CB2 HB23 sing N N 21 DIV N CA sing N N 22 DIV N H sing N N 23 DIV N H2 sing N N 24 DIV CA CB1 sing N N 25 DIV CA CB2 sing N N 26 DIV CA C sing N N 27 DIV CB1 CG1 sing N N 28 DIV CB1 HB11 sing N N 29 DIV CB1 HB12 sing N N 30 DIV CG1 HG11 sing N N 31 DIV CG1 HG12 sing N N 32 DIV CG1 HG13 sing N N 33 DIV CB2 HB21 sing N N 34 DIV CB2 HB22 sing N N 35 DIV CB2 HB23 sing N N 36 DIV C O doub N N 37 DIV C OXT sing N N 38 DIV OXT HXT sing N N 39 GLN N CA sing N N 40 GLN N H sing N N 41 GLN N H2 sing N N 42 GLN CA C sing N N 43 GLN CA CB sing N N 44 GLN CA HA sing N N 45 GLN C O doub N N 46 GLN C OXT sing N N 47 GLN CB CG sing N N 48 GLN CB HB2 sing N N 49 GLN CB HB3 sing N N 50 GLN CG CD sing N N 51 GLN CG HG2 sing N N 52 GLN CG HG3 sing N N 53 GLN CD OE1 doub N N 54 GLN CD NE2 sing N N 55 GLN NE2 HE21 sing N N 56 GLN NE2 HE22 sing N N 57 GLN OXT HXT sing N N 58 GLY N CA sing N N 59 GLY N H sing N N 60 GLY N H2 sing N N 61 GLY CA C sing N N 62 GLY CA HA2 sing N N 63 GLY CA HA3 sing N N 64 GLY C O doub N N 65 GLY C OXT sing N N 66 GLY OXT HXT sing N N 67 HYP N CA sing N N 68 HYP N CD sing N N 69 HYP N H sing N N 70 HYP CA C sing N N 71 HYP CA CB sing N N 72 HYP CA HA sing N N 73 HYP C O doub N N 74 HYP C OXT sing N N 75 HYP CB CG sing N N 76 HYP CB HB2 sing N N 77 HYP CB HB3 sing N N 78 HYP CG CD sing N N 79 HYP CG OD1 sing N N 80 HYP CG HG sing N N 81 HYP CD HD22 sing N N 82 HYP CD HD23 sing N N 83 HYP OD1 HD1 sing N N 84 HYP OXT HXT sing N N 85 LEU N CA sing N N 86 LEU N H sing N N 87 LEU N H2 sing N N 88 LEU CA C sing N N 89 LEU CA CB sing N N 90 LEU CA HA sing N N 91 LEU C O doub N N 92 LEU C OXT sing N N 93 LEU CB CG sing N N 94 LEU CB HB2 sing N N 95 LEU CB HB3 sing N N 96 LEU CG CD1 sing N N 97 LEU CG CD2 sing N N 98 LEU CG HG sing N N 99 LEU CD1 HD11 sing N N 100 LEU CD1 HD12 sing N N 101 LEU CD1 HD13 sing N N 102 LEU CD2 HD21 sing N N 103 LEU CD2 HD22 sing N N 104 LEU CD2 HD23 sing N N 105 LEU OXT HXT sing N N 106 MOH C O sing N N 107 MOH C H1 sing N N 108 MOH C H2 sing N N 109 MOH C H3 sing N N 110 MOH O HO sing N N 111 PHE N CA sing N N 112 PHE N H sing N N 113 PHE N H2 sing N N 114 PHE CA C sing N N 115 PHE CA CB sing N N 116 PHE CA HA sing N N 117 PHE C O doub N N 118 PHE C OXT sing N N 119 PHE CB CG sing N N 120 PHE CB HB2 sing N N 121 PHE CB HB3 sing N N 122 PHE CG CD1 doub Y N 123 PHE CG CD2 sing Y N 124 PHE CD1 CE1 sing Y N 125 PHE CD1 HD1 sing N N 126 PHE CD2 CE2 doub Y N 127 PHE CD2 HD2 sing N N 128 PHE CE1 CZ doub Y N 129 PHE CE1 HE1 sing N N 130 PHE CE2 CZ sing Y N 131 PHE CE2 HE2 sing N N 132 PHE CZ HZ sing N N 133 PHE OXT HXT sing N N 134 PHL N CA sing N N 135 PHL N H sing N N 136 PHL N H2 sing N N 137 PHL CA C sing N N 138 PHL CA CB sing N N 139 PHL CA HA sing N N 140 PHL C O sing N N 141 PHL C HC1 sing N N 142 PHL C HC2 sing N N 143 PHL O HO sing N N 144 PHL CB CG sing N N 145 PHL CB HB2 sing N N 146 PHL CB HB3 sing N N 147 PHL CG CD1 doub Y N 148 PHL CG CD2 sing Y N 149 PHL CD1 CE1 sing Y N 150 PHL CD1 HD1 sing N N 151 PHL CD2 CE2 doub Y N 152 PHL CD2 HD2 sing N N 153 PHL CE1 CZ doub Y N 154 PHL CE1 HE1 sing N N 155 PHL CE2 CZ sing Y N 156 PHL CE2 HE2 sing N N 157 PHL CZ HZ sing N N 158 PRO N CA sing N N 159 PRO N CD sing N N 160 PRO N H sing N N 161 PRO CA C sing N N 162 PRO CA CB sing N N 163 PRO CA HA sing N N 164 PRO C O doub N N 165 PRO C OXT sing N N 166 PRO CB CG sing N N 167 PRO CB HB2 sing N N 168 PRO CB HB3 sing N N 169 PRO CG CD sing N N 170 PRO CG HG2 sing N N 171 PRO CG HG3 sing N N 172 PRO CD HD2 sing N N 173 PRO CD HD3 sing N N 174 PRO OXT HXT sing N N 175 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'RESIDUES 6 - 16 OF LEU1-ZERVAMICIN WITH ALL NON -EQUIVALENT SIDE-CHAINS TRIMMED TO ALA.' # _atom_sites.entry_id 1JOH _atom_sites.fract_transf_matrix[1][1] 0.037693 _atom_sites.fract_transf_matrix[1][2] 0.025281 _atom_sites.fract_transf_matrix[1][3] 0.005782 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.041780 _atom_sites.fract_transf_matrix[2][3] 0.002293 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.111288 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_