HEADER TRANSFERASE 28-DEC-98 1JOY TITLE SOLUTION STRUCTURE OF THE HOMODIMERIC DOMAIN OF ENVZ FROM ESCHERICHIA TITLE 2 COLI BY MULTI-DIMENSIONAL NMR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (ENVZ_ECOLI); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 223-289; COMPND 5 EC: 2.7.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HISTIDINE KINASE, SENSORY TRANSDUCTION, OSMOLARITY SENSOR PROTEIN, KEYWDS 2 INNER MEMBRANE, PHOSPHORYLATION, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR C.TOMOMORI,T.TANAKA,R.DUTTA,H.PARK,S.K.SAHA,Y.ZHU,R.ISHIMA,D.LIU, AUTHOR 2 K.I.TONG,H.KUROKAWA,H.QIAN,M.INOUYE,M.IKURA REVDAT 5 27-DEC-23 1JOY 1 REMARK REVDAT 4 06-NOV-13 1JOY 1 ATOM REVDAT 3 24-FEB-09 1JOY 1 VERSN REVDAT 2 01-APR-03 1JOY 1 JRNL REVDAT 1 12-JAN-00 1JOY 0 JRNL AUTH C.TOMOMORI,T.TANAKA,R.DUTTA,H.PARK,S.K.SAHA,Y.ZHU,R.ISHIMA, JRNL AUTH 2 D.LIU,K.I.TONG,H.KUROKAWA,H.QIAN,M.INOUYE,M.IKURA JRNL TITL SOLUTION STRUCTURE OF THE HOMODIMERIC CORE DOMAIN OF JRNL TITL 2 ESCHERICHIA COLI HISTIDINE KINASE ENVZ. JRNL REF NAT.STRUCT.BIOL. V. 6 729 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10426948 JRNL DOI 10.1038/11495 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 TITL NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E.COLI REMARK 1 TITL 2 OSMOSENSOR ENVZ. REMARK 1 REF NATURE V. 396 88 1998 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JOY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000007119. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY-PLUS 500; UNITY 600 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 7 REMARK 210 REMARK 210 REMARK: REMARK 210 THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C- REMARK 210 LABELED OR 13C/15N-LABELED ENVZ (223-289). REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 225 -44.01 -170.28 REMARK 500 1 ALA A 231 -166.47 177.03 REMARK 500 1 HIS A 243 -38.19 -33.77 REMARK 500 1 ASP A 263 56.38 -174.46 REMARK 500 1 ALA B 225 -44.15 -170.27 REMARK 500 1 ALA B 231 -166.50 177.04 REMARK 500 1 HIS B 243 -38.17 -33.78 REMARK 500 1 ASP B 263 56.38 -174.45 REMARK 500 2 LYS A 228 40.35 -108.63 REMARK 500 2 LEU A 230 38.81 -89.83 REMARK 500 2 ASP A 233 -36.15 -139.80 REMARK 500 2 SER A 242 -27.28 -36.38 REMARK 500 2 ILE A 270 -70.57 -86.37 REMARK 500 2 LYS B 228 40.37 -108.61 REMARK 500 2 LEU B 230 38.81 -89.88 REMARK 500 2 ASP B 233 -36.14 -139.86 REMARK 500 2 SER B 242 -27.35 -36.42 REMARK 500 2 ILE B 270 -70.68 -86.38 REMARK 500 3 ALA A 225 -52.23 -126.78 REMARK 500 3 GLN A 229 53.04 -157.75 REMARK 500 3 ASP A 232 30.56 -179.07 REMARK 500 3 ASP A 263 57.97 -162.01 REMARK 500 3 ASN A 271 -28.62 -39.94 REMARK 500 3 TYR A 287 41.11 -162.78 REMARK 500 3 ALA B 225 -52.30 -126.74 REMARK 500 3 GLN B 229 52.97 -157.77 REMARK 500 3 ASP B 232 30.56 -179.12 REMARK 500 3 ASP B 263 57.99 -162.06 REMARK 500 3 ASN B 271 -28.68 -39.93 REMARK 500 3 TYR B 287 41.17 -162.77 REMARK 500 4 GLN A 229 32.06 -157.26 REMARK 500 4 LEU A 230 -38.09 -151.49 REMARK 500 4 ALA A 231 39.74 -156.39 REMARK 500 4 ASP A 232 30.35 -162.59 REMARK 500 4 ASP A 233 -61.45 -143.78 REMARK 500 4 MET A 238 -75.01 -65.93 REMARK 500 4 SER A 242 -28.86 -35.21 REMARK 500 4 ASP A 263 59.43 -152.94 REMARK 500 4 ILE A 270 -71.76 -84.21 REMARK 500 4 LEU A 288 47.26 -85.72 REMARK 500 4 GLN B 229 32.00 -157.25 REMARK 500 4 LEU B 230 -38.13 -151.44 REMARK 500 4 ALA B 231 39.80 -156.34 REMARK 500 4 ASP B 232 30.37 -162.63 REMARK 500 4 ASP B 233 -61.43 -143.79 REMARK 500 4 MET B 238 -74.99 -66.01 REMARK 500 4 SER B 242 -28.93 -35.14 REMARK 500 4 ASP B 263 59.45 -152.91 REMARK 500 4 ILE B 270 -71.76 -84.21 REMARK 500 4 LEU B 288 47.25 -85.73 REMARK 500 REMARK 500 THIS ENTRY HAS 322 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 234 0.14 SIDE CHAIN REMARK 500 1 ARG A 246 0.17 SIDE CHAIN REMARK 500 1 ARG A 251 0.27 SIDE CHAIN REMARK 500 1 ARG A 253 0.32 SIDE CHAIN REMARK 500 1 ARG A 289 0.31 SIDE CHAIN REMARK 500 1 ARG B 234 0.14 SIDE CHAIN REMARK 500 1 ARG B 246 0.17 SIDE CHAIN REMARK 500 1 ARG B 251 0.27 SIDE CHAIN REMARK 500 1 ARG B 253 0.32 SIDE CHAIN REMARK 500 1 ARG B 289 0.31 SIDE CHAIN REMARK 500 2 ARG A 234 0.31 SIDE CHAIN REMARK 500 2 ARG A 246 0.32 SIDE CHAIN REMARK 500 2 ARG A 251 0.31 SIDE CHAIN REMARK 500 2 ARG A 253 0.08 SIDE CHAIN REMARK 500 2 ARG A 289 0.21 SIDE CHAIN REMARK 500 2 ARG B 234 0.31 SIDE CHAIN REMARK 500 2 ARG B 246 0.32 SIDE CHAIN REMARK 500 2 ARG B 251 0.31 SIDE CHAIN REMARK 500 2 ARG B 253 0.08 SIDE CHAIN REMARK 500 2 ARG B 289 0.21 SIDE CHAIN REMARK 500 3 ARG A 234 0.29 SIDE CHAIN REMARK 500 3 ARG A 246 0.26 SIDE CHAIN REMARK 500 3 ARG A 251 0.12 SIDE CHAIN REMARK 500 3 ARG A 253 0.13 SIDE CHAIN REMARK 500 3 ARG A 289 0.31 SIDE CHAIN REMARK 500 3 ARG B 234 0.29 SIDE CHAIN REMARK 500 3 ARG B 246 0.26 SIDE CHAIN REMARK 500 3 ARG B 251 0.12 SIDE CHAIN REMARK 500 3 ARG B 253 0.13 SIDE CHAIN REMARK 500 3 ARG B 289 0.31 SIDE CHAIN REMARK 500 4 ARG A 234 0.32 SIDE CHAIN REMARK 500 4 ARG A 246 0.13 SIDE CHAIN REMARK 500 4 ARG A 251 0.23 SIDE CHAIN REMARK 500 4 ARG A 253 0.27 SIDE CHAIN REMARK 500 4 ARG A 289 0.32 SIDE CHAIN REMARK 500 4 ARG B 234 0.32 SIDE CHAIN REMARK 500 4 ARG B 246 0.13 SIDE CHAIN REMARK 500 4 ARG B 251 0.23 SIDE CHAIN REMARK 500 4 ARG B 253 0.27 SIDE CHAIN REMARK 500 4 ARG B 289 0.32 SIDE CHAIN REMARK 500 5 ARG A 234 0.20 SIDE CHAIN REMARK 500 5 ARG A 246 0.17 SIDE CHAIN REMARK 500 5 ARG A 251 0.32 SIDE CHAIN REMARK 500 5 ARG A 253 0.25 SIDE CHAIN REMARK 500 5 ARG A 289 0.22 SIDE CHAIN REMARK 500 5 ARG B 234 0.20 SIDE CHAIN REMARK 500 5 ARG B 246 0.17 SIDE CHAIN REMARK 500 5 ARG B 251 0.32 SIDE CHAIN REMARK 500 5 ARG B 253 0.25 SIDE CHAIN REMARK 500 5 ARG B 289 0.22 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 202 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: APH REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: AUTOPHOSPHORYLATION SITE DBREF 1JOY A 223 289 UNP P02933 ENVZ_ECOLI 223 289 DBREF 1JOY B 223 289 UNP P02933 ENVZ_ECOLI 223 289 SEQRES 1 A 67 MET ALA ALA GLY VAL LYS GLN LEU ALA ASP ASP ARG THR SEQRES 2 A 67 LEU LEU MET ALA GLY VAL SER HIS ASP LEU ARG THR PRO SEQRES 3 A 67 LEU THR ARG ILE ARG LEU ALA THR GLU MET MET SER GLU SEQRES 4 A 67 GLN ASP GLY TYR LEU ALA GLU SER ILE ASN LYS ASP ILE SEQRES 5 A 67 GLU GLU CYS ASN ALA ILE ILE GLU GLN PHE ILE ASP TYR SEQRES 6 A 67 LEU ARG SEQRES 1 B 67 MET ALA ALA GLY VAL LYS GLN LEU ALA ASP ASP ARG THR SEQRES 2 B 67 LEU LEU MET ALA GLY VAL SER HIS ASP LEU ARG THR PRO SEQRES 3 B 67 LEU THR ARG ILE ARG LEU ALA THR GLU MET MET SER GLU SEQRES 4 B 67 GLN ASP GLY TYR LEU ALA GLU SER ILE ASN LYS ASP ILE SEQRES 5 B 67 GLU GLU CYS ASN ALA ILE ILE GLU GLN PHE ILE ASP TYR SEQRES 6 B 67 LEU ARG HELIX 1 1 ARG A 234 MET A 238 1 5 HELIX 2 2 SER A 242 LEU A 245 1 4 HELIX 3 3 THR A 247 ASP A 263 1 17 HELIX 4 4 TYR A 265 ILE A 285 1 21 HELIX 5 5 ARG B 234 MET B 238 1 5 HELIX 6 6 SER B 242 LEU B 245 1 4 HELIX 7 7 THR B 247 ASP B 263 1 17 HELIX 8 8 TYR B 265 ILE B 285 1 21 SITE 1 APH 1 HIS A 243 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1