data_1JP0 # _entry.id 1JP0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JP0 pdb_00001jp0 10.2210/pdb1jp0/pdb RCSB RCSB014018 ? ? WWPDB D_1000014018 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JP0 _pdbx_database_status.recvd_initial_deposition_date 2001-07-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1JOX _pdbx_database_related.details 'NMR structure of the LP5.1 hairpin from Bacillus RNase P RNA refined WITH residual dipolar couplings.' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leeper, T.C.' 1 'Schmidt, F.J.' 2 'Van Doren, S.R.' 3 # _citation.id primary _citation.title 'Structure of the UGAGAU hexaloop that braces Bacillus RNase P for action.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 9 _citation.page_first 397 _citation.page_last 403 _citation.year 2002 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11927952 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leeper, T.C.' 1 ? primary 'Martin, M.B.' 2 ? primary 'Kim, H.' 3 ? primary 'Cox, S.' 4 ? primary 'Semenchenko, V.' 5 ? primary 'Schmidt, F.J.' 6 ? primary 'Van Doren, S.R.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*GP*GP*CP*GP*GP*UP*GP*CP*UP*GP*AP*GP*AP*UP*GP*CP*CP*CP*GP*UP*C)-3'" _entity.formula_weight 6776.060 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'PL5.1 HAIRPIN FROM RNASE P RNA' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGGUGCUGAGAUGCCCGUC _entity_poly.pdbx_seq_one_letter_code_can GGCGGUGCUGAGAUGCCCGUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 G n 1 6 U n 1 7 G n 1 8 C n 1 9 U n 1 10 G n 1 11 A n 1 12 G n 1 13 A n 1 14 U n 1 15 G n 1 16 C n 1 17 C n 1 18 C n 1 19 G n 1 20 U n 1 21 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'IN VITRO TRANSCRIPTION' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 C 18 18 18 C C A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n # _cell.entry_id 1JP0 _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _exptl.entry_id 1JP0 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1JP0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1JP0 _struct.title 'NMR Structure of the LP5.1 Hairpin from Bacillus RNase P RNA Refined WITHOUT Residual Dipolar Couplings' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JP0 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RIBONUCLEIC ACID, RNASE P, HAIRPIN, RESIDUAL DIPOLAR COUPLING REFINEMENT, UGNRAU, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1JP0 _struct_ref.pdbx_db_accession 1JP0 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1JP0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 21 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1JP0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 21 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 20 O2 ? ? A G 2 A U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 20 N3 ? ? A G 2 A U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 3 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 3 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 3 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 4 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 4 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 4 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 5 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 5 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 5 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 7 A C 16 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog16 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.34 2 1 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.38 3 1 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.40 4 1 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.49 5 1 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.52 6 1 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 7 1 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 8 2 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.42 9 2 H21 A G 4 ? ? O2 A C 18 ? ? 1.53 10 2 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.55 11 2 O2 A C 3 ? ? H21 A G 19 ? ? 1.57 12 2 H21 A G 5 ? ? O2 A C 17 ? ? 1.58 13 2 "O2'" A U 9 ? ? "HO2'" A A 13 ? ? 1.60 14 2 O2 A C 8 ? ? H21 A G 15 ? ? 1.60 15 3 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.39 16 3 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.51 17 3 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 18 3 O2 A C 3 ? ? H21 A G 19 ? ? 1.57 19 4 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.35 20 4 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.37 21 4 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.52 22 4 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.54 23 4 O2 A C 3 ? ? H21 A G 19 ? ? 1.54 24 4 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 25 5 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.37 26 5 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.40 27 5 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.48 28 5 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.48 29 5 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 30 5 O2 A C 3 ? ? H21 A G 19 ? ? 1.57 31 5 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.57 32 6 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.40 33 6 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 34 6 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 35 6 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.57 36 6 O6 A G 5 ? ? H41 A C 17 ? ? 1.60 37 7 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.35 38 7 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.42 39 7 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.49 40 7 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 41 7 O2 A C 3 ? ? H21 A G 19 ? ? 1.55 42 7 H21 A G 5 ? ? O2 A C 17 ? ? 1.56 43 8 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.45 44 8 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.52 45 8 H21 A G 4 ? ? O2 A C 18 ? ? 1.53 46 8 "H4'" A G 5 ? ? "O5'" A U 6 ? ? 1.55 47 8 O2 A C 3 ? ? H21 A G 19 ? ? 1.57 48 8 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.58 49 9 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.38 50 9 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.46 51 9 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.49 52 9 "H4'" A G 5 ? ? "O5'" A U 6 ? ? 1.54 53 9 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 54 9 O2 A C 3 ? ? H21 A G 19 ? ? 1.59 55 10 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.32 56 10 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.34 57 10 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.53 58 10 H21 A G 4 ? ? O2 A C 18 ? ? 1.54 59 10 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.57 60 10 O2 A C 3 ? ? H21 A G 19 ? ? 1.57 61 10 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.58 62 11 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.36 63 11 "O2'" A G 5 ? ? H8 A G 7 ? ? 1.44 64 11 H21 A G 4 ? ? O2 A C 18 ? ? 1.51 65 11 "O2'" A C 3 ? ? "H5'" A G 4 ? ? 1.54 66 11 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 67 11 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.56 68 11 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.59 69 12 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.39 70 12 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.47 71 12 H21 A G 4 ? ? O2 A C 18 ? ? 1.53 72 12 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.54 73 12 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 74 12 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.58 75 13 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.35 76 13 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.39 77 13 "O2'" A G 5 ? ? "H3'" A U 6 ? ? 1.47 78 13 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.50 79 13 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.55 80 13 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 81 13 H21 A G 5 ? ? O2 A C 17 ? ? 1.57 82 14 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.31 83 14 H21 A G 4 ? ? O2 A C 18 ? ? 1.54 84 14 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.56 85 14 O2 A C 8 ? ? H21 A G 15 ? ? 1.57 86 15 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.46 87 15 H21 A G 4 ? ? O2 A C 18 ? ? 1.54 88 15 O2 A C 8 ? ? H21 A G 15 ? ? 1.57 89 15 O2 A C 3 ? ? H21 A G 19 ? ? 1.59 90 16 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.39 91 16 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.42 92 16 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.52 93 16 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.52 94 16 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.53 95 16 H21 A G 4 ? ? O2 A C 18 ? ? 1.53 96 16 "O2'" A C 3 ? ? "H5'" A G 4 ? ? 1.54 97 16 "HO2'" A U 6 ? ? "O5'" A G 7 ? ? 1.55 98 16 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 99 16 O6 A G 5 ? ? H41 A C 17 ? ? 1.60 100 17 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.40 101 17 "O2'" A C 3 ? ? "H5'" A G 4 ? ? 1.45 102 17 H21 A G 4 ? ? O2 A C 18 ? ? 1.53 103 17 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.56 104 17 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 105 17 "H2'" A C 17 ? ? "O4'" A C 18 ? ? 1.58 106 17 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.58 107 18 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.38 108 18 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.42 109 18 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.51 110 18 H21 A G 4 ? ? O2 A C 18 ? ? 1.52 111 18 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.58 112 18 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.60 113 19 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.33 114 19 H21 A G 4 ? ? O2 A C 18 ? ? 1.54 115 19 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 116 19 O2 A C 8 ? ? H21 A G 15 ? ? 1.56 117 20 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.37 118 20 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.40 119 20 "O2'" A G 5 ? ? "H3'" A U 6 ? ? 1.54 120 20 H21 A G 4 ? ? O2 A C 18 ? ? 1.54 121 20 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.55 122 20 "H2'" A G 15 ? ? "O4'" A C 16 ? ? 1.56 123 20 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.57 124 20 "HO2'" A U 6 ? ? "O5'" A G 7 ? ? 1.58 125 20 O2 A C 3 ? ? H21 A G 19 ? ? 1.60 126 21 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.37 127 21 "O2'" A C 3 ? ? "H5'" A G 4 ? ? 1.46 128 21 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.48 129 21 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.50 130 21 H21 A G 4 ? ? O2 A C 18 ? ? 1.53 131 21 O2 A C 3 ? ? H21 A G 19 ? ? 1.54 132 21 H21 A G 5 ? ? O2 A C 17 ? ? 1.54 133 21 H21 A G 1 ? ? O2 A C 21 ? ? 1.58 134 22 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.35 135 22 "O2'" A C 3 ? ? "H5'" A G 4 ? ? 1.45 136 22 H21 A G 4 ? ? O2 A C 18 ? ? 1.53 137 22 "O4'" A G 5 ? ? H6 A U 6 ? ? 1.56 138 22 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 139 22 "H2'" A G 4 ? ? N7 A G 5 ? ? 1.58 140 23 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.42 141 23 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.50 142 23 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 143 23 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.55 144 23 O2 A C 3 ? ? H21 A G 19 ? ? 1.57 145 23 "H2'" A C 17 ? ? "O4'" A C 18 ? ? 1.58 146 23 "H4'" A G 5 ? ? "O5'" A U 6 ? ? 1.60 147 24 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.40 148 24 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.43 149 24 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.49 150 24 H21 A G 4 ? ? O2 A C 18 ? ? 1.53 151 24 "O3'" A G 4 ? ? H8 A G 5 ? ? 1.55 152 24 "HO2'" A U 6 ? ? "O5'" A G 7 ? ? 1.56 153 24 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.58 154 25 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.38 155 25 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.46 156 25 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.46 157 25 "HO2'" A G 5 ? ? "O5'" A U 6 ? ? 1.46 158 25 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.48 159 25 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.49 160 25 O2 A C 3 ? ? H21 A G 19 ? ? 1.56 161 25 H21 A G 4 ? ? O2 A C 18 ? ? 1.57 162 26 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.31 163 26 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.46 164 26 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.53 165 26 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 166 26 H21 A G 7 ? ? O2 A C 16 ? ? 1.58 167 26 H21 A G 1 ? ? O2 A C 21 ? ? 1.59 168 26 "HO2'" A C 8 ? ? "O5'" A U 9 ? ? 1.60 169 27 "H2'" A C 8 ? ? "O4'" A U 9 ? ? 1.45 170 27 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.51 171 27 "HO2'" A G 4 ? ? "O5'" A G 5 ? ? 1.52 172 27 H21 A G 4 ? ? O2 A C 18 ? ? 1.55 173 27 H8 A G 10 ? ? "O3'" A A 13 ? ? 1.60 174 28 "H2'" A U 14 ? ? "O4'" A G 15 ? ? 1.36 175 28 "HO2'" A G 12 ? ? "O5'" A A 13 ? ? 1.44 176 28 H21 A G 4 ? ? O2 A C 18 ? ? 1.52 177 28 O2 A C 3 ? ? H21 A G 19 ? ? 1.57 178 28 N7 A A 11 ? ? "H5''" A A 13 ? ? 1.57 179 28 "HO2'" A U 9 ? ? O4 A U 14 ? ? 1.58 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 26 _pdbx_validate_rmsd_angle.auth_atom_id_1 N9 _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 13 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 13 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 13 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.88 _pdbx_validate_rmsd_angle.angle_target_value 114.00 _pdbx_validate_rmsd_angle.angle_deviation 9.88 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 20 C A 21 ? ? 0.068 'SIDE CHAIN' 2 21 C A 21 ? ? 0.062 'SIDE CHAIN' 3 25 G A 5 ? ? 0.059 'SIDE CHAIN' 4 28 U A 9 ? ? 0.084 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1JP0 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 28 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1JP0 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.0 mM PL5.1 hairpin RNA U-15N,13C, 20mM phosphate buffer NA, 100% D2O' '100% D2O' 2 '1.0 mM PL5.1 hairpin RNA U-15N,13C, 20mM phosphate buffer NA, 8% H2O 92% D2O' '8% H2O 92% D2O' 3 '2.5 mM PL5.1 hairpin RNA U-15N,13C U and A residues only, 20mM phosphate buffer NA, 100% D2O' '100% D2O' 4 '1.8 mM PL5.1 hairpin RNA U-15N,13C A, C, and G residues only, 20mM phosphate buffer NA, 100% D2O' '100% D2O' 5 '1.8 mM PL5.1 hairpin RNA U-15N,13C A, C, and G residues only, 20mM phosphate buffer NA, 8% H2O 92% D2O' '8% H2O 92% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 ambient 5.5 '20 mM Sodium Phosphate' ? K 2 277 ambient 5.5 '20 mM Sodium Phosphate' ? K 3 298 ambient 5.5 '20 mM Sodium Phosphate' ? K 4 298 ambient 5.5 '20 mM Sodium Phosphate' ? K 5 277 ambient 5.5 '20 mM Sodium Phosphate' ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '13C-separated-NOESY (Mixing times of 200 and 250 ms)' 2 1 1 'NOESY (Mixing times of 80 and 140 ms)' 3 1 1 HCCH-TOCSY 4 1 1 HCCH-COSY 5 1 1 13C-Hetero-TOCSY # _pdbx_nmr_refine.entry_id 1JP0 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details 'residual dipolar coupling refinement were NOT used for this structure, see 1JOX.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal CNS 1.0 refinement 'Brunger et. al' 1 CNS 1.0 'structure solution' 'Brunger et. al' 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1JP0 'double helix' 1JP0 'a-form double helix' 1JP0 'hairpin loop' 1JP0 'bulge loop' 1JP0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 21 1_555 -1.390 -0.448 -0.120 0.135 -4.796 7.767 1 A_G1:C21_A A 1 ? A 21 ? 19 1 1 A G 2 1_555 A U 20 1_555 -1.249 -0.292 0.077 0.604 -9.245 -11.429 2 A_G2:U20_A A 2 ? A 20 ? 28 ? 1 A C 3 1_555 A G 19 1_555 0.109 -0.194 -0.166 4.030 2.058 2.724 3 A_C3:G19_A A 3 ? A 19 ? 19 1 1 A G 4 1_555 A C 18 1_555 -0.799 -0.571 -0.130 -0.898 -7.837 2.490 4 A_G4:C18_A A 4 ? A 18 ? 19 1 1 A G 5 1_555 A C 17 1_555 -0.402 -0.614 -0.521 4.427 6.517 -5.800 5 A_G5:C17_A A 5 ? A 17 ? 19 1 1 A G 7 1_555 A C 16 1_555 0.104 0.212 0.207 8.472 -2.976 -11.967 6 A_G7:C16_A A 7 ? A 16 ? ? ? 1 A C 8 1_555 A G 15 1_555 0.549 -0.371 0.043 3.991 -4.962 -2.714 7 A_C8:G15_A A 8 ? A 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 21 1_555 A G 2 1_555 A U 20 1_555 -0.993 -2.014 3.072 -0.578 -8.748 27.185 -2.017 1.878 3.555 -18.027 1.191 28.538 1 AA_G1G2:U20C21_AA A 1 ? A 21 ? A 2 ? A 20 ? 1 A G 2 1_555 A U 20 1_555 A C 3 1_555 A G 19 1_555 0.743 -2.016 3.340 -2.750 -11.106 34.259 -1.509 -1.633 3.725 -18.234 4.514 36.065 2 AA_G2C3:G19U20_AA A 2 ? A 20 ? A 3 ? A 19 ? 1 A C 3 1_555 A G 19 1_555 A G 4 1_555 A C 18 1_555 -0.853 -2.493 3.030 -4.221 5.083 26.123 -6.492 0.884 2.610 11.022 9.153 26.931 3 AA_C3G4:C18G19_AA A 3 ? A 19 ? A 4 ? A 18 ? 1 A G 4 1_555 A C 18 1_555 A G 5 1_555 A C 17 1_555 -2.513 0.178 2.772 -5.241 27.548 34.404 -2.176 2.887 2.581 39.469 7.508 44.115 4 AA_G4G5:C17C18_AA A 4 ? A 18 ? A 5 ? A 17 ? 1 A G 5 1_555 A C 17 1_555 A G 7 1_555 A C 16 1_555 -1.180 -1.464 3.031 -13.845 2.110 32.090 -2.754 -0.107 3.159 3.610 23.686 34.939 5 AA_G5G7:C16C17_AA A 5 ? A 17 ? A 7 ? A 16 ? 1 A G 7 1_555 A C 16 1_555 A C 8 1_555 A G 15 1_555 -0.376 -1.819 3.134 -1.799 12.724 28.248 -5.487 0.409 2.153 24.529 3.468 30.979 6 AA_G7C8:G15C16_AA A 7 ? A 16 ? A 8 ? A 15 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 500 2 ? Varian INOVA 600 # _atom_sites.entry_id 1JP0 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_