HEADER TRANSFERASE 31-JUL-01 1JP3 TITLE STRUCTURE OF E.COLI UNDECAPRENYL PYROPHOSPHATE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNDECAPRENYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.31; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32XA-LIC KEYWDS ROSSMANN FOLD, HYDROPHOBIC TUNNEL, PRODUCT CHAIN LENGTH, KEYWDS 2 FLEXIBLE LOOP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.P.KO,Y.K.CHEN,H.ROBINSON,P.C.TSAI,Y.G.GAO,A.P.C.CHEN, AUTHOR 2 A.H.J.WANG,P.H.LIANG REVDAT 5 24-FEB-09 1JP3 1 VERSN REVDAT 4 01-APR-03 1JP3 1 JRNL REVDAT 3 18-DEC-02 1JP3 1 REMARK REVDAT 2 10-APR-02 1JP3 1 JRNL REVDAT 1 15-AUG-01 1JP3 0 JRNL AUTH T.P.KO,Y.K.CHEN,H.ROBINSON,P.C.TSAI,Y.G.GAO, JRNL AUTH 2 A.P.CHEN,A.H.WANG,P.H.LIANG JRNL TITL MECHANISM OF PRODUCT CHAIN LENGTH DETERMINATION JRNL TITL 2 AND THE ROLE OF A FLEXIBLE LOOP IN ESCHERICHIA JRNL TITL 3 COLI UNDECAPRENYL-PYROPHOSPHATE SYNTHASE CATALYSIS. JRNL REF J.BIOL.CHEM. V. 276 47474 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11581264 JRNL DOI 10.1074/JBC.M106747200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 533864.890 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 44367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2215 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4115 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 199 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 645 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.63000 REMARK 3 B22 (A**2) : -1.20000 REMARK 3 B33 (A**2) : 1.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.95 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.940 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.570 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.560 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.350 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 66.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : EGC.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : EGC.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JP3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-01. REMARK 100 THE RCSB ID CODE IS RCSB014021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SILICON CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44820 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SINGLE-WAVELENGTH REMARK 200 ANOMALOUS DIFFRACTION (SAD) REMARK 200 SOFTWARE USED: SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRITON X-100, PEG8000, ETHYLELE REMARK 280 GLYCOL, HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.09000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.07250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.66700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.07250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.66700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ENZYME IS A DIMER, INCLUDING CHAINS REMARK 300 A AND B IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 LYS A 12 REMARK 465 SER A 72 REMARK 465 GLU A 73 REMARK 465 ASN A 74 REMARK 465 TRP A 75 REMARK 465 ASN A 76 REMARK 465 ARG A 77 REMARK 465 PRO A 78 REMARK 465 ALA A 79 REMARK 465 GLN A 80 REMARK 465 GLU A 81 REMARK 465 VAL A 82 REMARK 465 SER A 83 REMARK 465 ALA A 84 REMARK 465 LEU A 85 REMARK 465 ARG A 241 REMARK 465 ARG A 242 REMARK 465 PHE A 243 REMARK 465 GLY A 244 REMARK 465 GLY A 245 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 PRO A 248 REMARK 465 GLY A 249 REMARK 465 ASP A 250 REMARK 465 GLU A 251 REMARK 465 THR A 252 REMARK 465 ALA A 253 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 GLN B 7 REMARK 465 PRO B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 GLU B 11 REMARK 465 LYS B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 HIS B 16 REMARK 465 SER B 72 REMARK 465 GLU B 73 REMARK 465 ASN B 74 REMARK 465 TRP B 75 REMARK 465 ASN B 76 REMARK 465 ARG B 77 REMARK 465 PRO B 78 REMARK 465 ALA B 79 REMARK 465 GLN B 80 REMARK 465 GLU B 81 REMARK 465 VAL B 82 REMARK 465 ARG B 239 REMARK 465 GLU B 240 REMARK 465 ARG B 241 REMARK 465 ARG B 242 REMARK 465 PHE B 243 REMARK 465 GLY B 244 REMARK 465 GLY B 245 REMARK 465 THR B 246 REMARK 465 GLU B 247 REMARK 465 PRO B 248 REMARK 465 GLY B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 THR B 252 REMARK 465 ALA B 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 234 O HOH A 830 2.11 REMARK 500 O HOH B 361 O HOH B 588 2.12 REMARK 500 NH1 ARG B 108 O HOH B 385 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 18 CB CYS B 18 SG -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 152.07 -49.86 REMARK 500 HIS A 199 67.50 -116.13 REMARK 500 PHE A 204 -144.94 -85.05 REMARK 500 LEU A 206 -62.37 -121.97 REMARK 500 ASP A 225 -167.91 -119.71 REMARK 500 HIS B 199 62.35 -112.80 REMARK 500 PHE B 204 -146.78 -84.97 REMARK 500 LEU B 206 -63.86 -123.01 REMARK 500 ASP B 225 -166.34 -121.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 826 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH A 845 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH A 846 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH B 407 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH A 874 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 875 DISTANCE = 9.12 ANGSTROMS REMARK 525 HOH A 877 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH B 438 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 439 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH B 442 DISTANCE = 8.53 ANGSTROMS REMARK 525 HOH A 891 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B 443 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH B 446 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH B 447 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH B 448 DISTANCE = 8.26 ANGSTROMS REMARK 525 HOH B 449 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH B 453 DISTANCE = 10.14 ANGSTROMS REMARK 525 HOH B 455 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 911 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH A 916 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH B 470 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A 921 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH A 927 DISTANCE = 11.69 ANGSTROMS REMARK 525 HOH A 928 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A 929 DISTANCE = 9.76 ANGSTROMS REMARK 525 HOH A 933 DISTANCE = 13.22 ANGSTROMS REMARK 525 HOH A 935 DISTANCE = 8.55 ANGSTROMS REMARK 525 HOH A 939 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B 491 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 495 DISTANCE = 8.55 ANGSTROMS REMARK 525 HOH B 497 DISTANCE = 5.78 ANGSTROMS REMARK 525 HOH A 946 DISTANCE = 10.36 ANGSTROMS REMARK 525 HOH A 948 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A 951 DISTANCE = 9.30 ANGSTROMS REMARK 525 HOH B 504 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A 954 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 507 DISTANCE = 9.29 ANGSTROMS REMARK 525 HOH B 518 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH B 524 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 525 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH B 526 DISTANCE = 8.39 ANGSTROMS REMARK 525 HOH B 527 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 528 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH B 534 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH B 544 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH B 546 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH B 547 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A 996 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH B 548 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH A 997 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B 550 DISTANCE = 9.35 ANGSTROMS REMARK 525 HOH B 552 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 553 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH B 554 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A1005 DISTANCE = 12.00 ANGSTROMS REMARK 525 HOH B 557 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 559 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH A1009 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A1010 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B 563 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH B 564 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B 571 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH B 575 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B 577 DISTANCE = 5.78 ANGSTROMS REMARK 525 HOH B 581 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH B 589 DISTANCE = 5.99 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EGC A 701 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EGC A 701 DBREF 1JP3 A 1 253 UNP P60472 UPPS_ECOLI 1 253 DBREF 1JP3 B 1 253 UNP P60472 UPPS_ECOLI 1 253 SEQADV 1JP3 MSE A 25 UNP P60472 MET 25 MODIFIED RESIDUE SEQADV 1JP3 MSE A 86 UNP P60472 MET 86 MODIFIED RESIDUE SEQADV 1JP3 MSE A 176 UNP P60472 MET 176 MODIFIED RESIDUE SEQADV 1JP3 MSE A 183 UNP P60472 MET 183 MODIFIED RESIDUE SEQADV 1JP3 MSE B 25 UNP P60472 MET 25 MODIFIED RESIDUE SEQADV 1JP3 MSE B 86 UNP P60472 MET 86 MODIFIED RESIDUE SEQADV 1JP3 MSE B 176 UNP P60472 MET 176 MODIFIED RESIDUE SEQADV 1JP3 MSE B 183 UNP P60472 MET 183 MODIFIED RESIDUE SEQRES 1 A 253 MET MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU SEQRES 2 A 253 PRO ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MSE ASP SEQRES 3 A 253 GLY ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG SEQRES 4 A 253 ALA PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG SEQRES 5 A 253 ALA VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU SEQRES 6 A 253 THR LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO SEQRES 7 A 253 ALA GLN GLU VAL SER ALA LEU MSE GLU LEU PHE VAL TRP SEQRES 8 A 253 ALA LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN SEQRES 9 A 253 VAL ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN SEQRES 10 A 253 SER ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU SEQRES 11 A 253 THR ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA SEQRES 12 A 253 ASN TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG SEQRES 13 A 253 GLN LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO SEQRES 14 A 253 ASP GLN ILE ASP GLU GLU MSE LEU ASN GLN HIS VAL CYS SEQRES 15 A 253 MSE HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR SEQRES 16 A 253 GLY GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN SEQRES 17 A 253 ILE ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP SEQRES 18 A 253 PRO ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN SEQRES 19 A 253 ALA PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU SEQRES 20 A 253 PRO GLY ASP GLU THR ALA SEQRES 1 B 253 MET MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU SEQRES 2 B 253 PRO ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MSE ASP SEQRES 3 B 253 GLY ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG SEQRES 4 B 253 ALA PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG SEQRES 5 B 253 ALA VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU SEQRES 6 B 253 THR LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO SEQRES 7 B 253 ALA GLN GLU VAL SER ALA LEU MSE GLU LEU PHE VAL TRP SEQRES 8 B 253 ALA LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN SEQRES 9 B 253 VAL ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN SEQRES 10 B 253 SER ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU SEQRES 11 B 253 THR ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA SEQRES 12 B 253 ASN TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG SEQRES 13 B 253 GLN LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO SEQRES 14 B 253 ASP GLN ILE ASP GLU GLU MSE LEU ASN GLN HIS VAL CYS SEQRES 15 B 253 MSE HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR SEQRES 16 B 253 GLY GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN SEQRES 17 B 253 ILE ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP SEQRES 18 B 253 PRO ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN SEQRES 19 B 253 ALA PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU SEQRES 20 B 253 PRO GLY ASP GLU THR ALA MODRES 1JP3 MSE A 25 MET SELENOMETHIONINE MODRES 1JP3 MSE A 86 MET SELENOMETHIONINE MODRES 1JP3 MSE A 176 MET SELENOMETHIONINE MODRES 1JP3 MSE A 183 MET SELENOMETHIONINE MODRES 1JP3 MSE B 25 MET SELENOMETHIONINE MODRES 1JP3 MSE B 86 MET SELENOMETHIONINE MODRES 1JP3 MSE B 176 MET SELENOMETHIONINE MODRES 1JP3 MSE B 183 MET SELENOMETHIONINE HET MSE A 25 8 HET MSE A 86 8 HET MSE A 176 8 HET MSE A 183 8 HET MSE B 25 8 HET MSE B 86 8 HET MSE B 176 8 HET MSE B 183 8 HET EGC A 701 12 HETNAM MSE SELENOMETHIONINE HETNAM EGC 2-(2-{2-[2-(2-{2-[2-(2-{2-[4-(1,1,3,3-TETRAMETHYL- HETNAM 2 EGC BUTYL)-PHENOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 3 EGC ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL HETSYN EGC TRITON X-100 FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 EGC C32 H58 O10 FORMUL 4 HOH *645(H2 O) HELIX 1 1 GLY A 27 GLY A 36 1 10 HELIX 2 2 ILE A 38 ASN A 60 1 23 HELIX 3 3 MSE A 86 HIS A 103 1 18 HELIX 4 4 ASN A 117 ALA A 132 1 16 HELIX 5 5 GLY A 146 GLN A 164 1 19 HELIX 6 6 GLN A 168 ILE A 172 5 5 HELIX 7 7 ASP A 173 GLN A 179 1 7 HELIX 8 8 LEU A 206 ALA A 210 5 5 HELIX 9 9 LEU A 220 PHE A 224 5 5 HELIX 10 10 ASP A 225 GLU A 240 1 16 HELIX 11 11 GLY B 27 GLN B 35 1 9 HELIX 12 12 ILE B 38 ASN B 60 1 23 HELIX 13 13 SER B 83 HIS B 103 1 21 HELIX 14 14 ASN B 117 ALA B 132 1 16 HELIX 15 15 GLY B 146 GLN B 164 1 19 HELIX 16 16 GLN B 168 ILE B 172 5 5 HELIX 17 17 ASP B 173 GLN B 179 1 7 HELIX 18 18 LEU B 206 ALA B 210 5 5 HELIX 19 19 LEU B 220 PHE B 224 5 5 HELIX 20 20 ASP B 225 ASN B 238 1 14 SHEET 1 A 6 ARG A 106 ILE A 110 0 SHEET 2 A 6 THR A 138 ALA A 142 1 N LEU A 139 O ARG A 106 SHEET 3 A 6 ALA A 64 ALA A 69 1 O LEU A 65 N ASN A 140 SHEET 4 A 6 HIS A 20 MSE A 25 1 O VAL A 21 N THR A 66 SHEET 5 A 6 LEU A 191 ARG A 194 1 O LEU A 191 N ALA A 22 SHEET 6 A 6 GLU A 213 PHE A 216 1 O GLU A 213 N VAL A 192 SHEET 1 B 6 ARG B 106 ILE B 110 0 SHEET 2 B 6 THR B 138 ALA B 142 1 N LEU B 139 O ARG B 106 SHEET 3 B 6 ALA B 64 ALA B 69 1 O LEU B 65 N ASN B 140 SHEET 4 B 6 HIS B 20 MSE B 25 1 O VAL B 21 N THR B 66 SHEET 5 B 6 LEU B 191 ARG B 194 1 O LEU B 191 N ALA B 22 SHEET 6 B 6 GLU B 213 PHE B 216 1 O GLU B 213 N VAL B 192 LINK N MSE A 25 C ILE A 24 1555 1555 1.32 LINK C MSE A 25 N ASP A 26 1555 1555 1.32 LINK C MSE A 86 N GLU A 87 1555 1555 1.33 LINK N MSE A 176 C GLU A 175 1555 1555 1.33 LINK C MSE A 176 N LEU A 177 1555 1555 1.32 LINK N MSE A 183 C CYS A 182 1555 1555 1.33 LINK C MSE A 183 N HIS A 184 1555 1555 1.34 LINK N MSE B 25 C ILE B 24 1555 1555 1.33 LINK C MSE B 25 N ASP B 26 1555 1555 1.32 LINK N MSE B 86 C LEU B 85 1555 1555 1.33 LINK C MSE B 86 N GLU B 87 1555 1555 1.33 LINK N MSE B 176 C GLU B 175 1555 1555 1.33 LINK C MSE B 176 N LEU B 177 1555 1555 1.33 LINK N MSE B 183 C CYS B 182 1555 1555 1.34 LINK C MSE B 183 N HIS B 184 1555 1555 1.32 SITE 1 AC1 4 MSE A 86 PHE A 89 GLU A 96 HOH A 807 CRYST1 64.180 67.334 110.145 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015581 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009079 0.00000