HEADER HYDROLASE 01-AUG-01 1JP4 TITLE CRYSTAL STRUCTURE OF AN ENZYME DISPLAYING BOTH INOSITOL-POLYPHOSPHATE TITLE 2 1-PHOSPHATASE AND 3'-PHOSPHOADENOSINE-5'-PHOSPHATE PHOSPHATASE TITLE 3 ACTIVITIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PIPASE: PAP AND INOSITOL 1,4 BISPHOSPHATE PHOSPHATASE; COMPND 5 EC: 3.1.3.7, 3.1.3.57; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: SAL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS PROTEIN-PRODUCT COMPLEX, SUGAR NUCLEOTIDASE FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PATEL,L.YENUSH,P.L.RODRIGUEZ,R.SERRANO,T.L.BLUNDELL REVDAT 6 13-MAR-24 1JP4 1 COMPND SOURCE REMARK LINK REVDAT 5 04-OCT-17 1JP4 1 REMARK REVDAT 4 24-FEB-09 1JP4 1 VERSN REVDAT 3 01-APR-03 1JP4 1 JRNL REVDAT 2 06-FEB-02 1JP4 1 JRNL REMARK REVDAT 1 08-AUG-01 1JP4 0 JRNL AUTH S.PATEL,L.YENUSH,P.L.RODRIGUEZ,R.SERRANO,T.L.BLUNDELL JRNL TITL CRYSTAL STRUCTURE OF AN ENZYME DISPLAYING BOTH JRNL TITL 2 INOSITOL-POLYPHOSPHATE-1-PHOSPHATASE AND JRNL TITL 3 3'-PHOSPHOADENOSINE-5'-PHOSPHATE PHOSPHATASE ACTIVITIES: A JRNL TITL 4 NOVEL TARGET OF LITHIUM THERAPY. JRNL REF J.MOL.BIOL. V. 315 677 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 11812139 JRNL DOI 10.1006/JMBI.2001.5271 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 38295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1918 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2257 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 418 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.274 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2337 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2149 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3174 ; 1.605 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5019 ; 1.940 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 5.603 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 423 ;17.333 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2574 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 415 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 470 ; 0.236 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2033 ; 0.195 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2 ; 0.199 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 293 ; 0.235 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.068 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.174 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.228 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1494 ; 1.496 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2404 ; 2.354 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 843 ; 3.245 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 770 ; 4.687 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE WAS INITIALLY SOLVED BY REMARK 3 ARP/WARP AUTOMATED BACKBONE TRACING FACILITY. REMARK 4 REMARK 4 1JP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-00; 26-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SRS; ESRF REMARK 200 BEAMLINE : PX9.6; BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.244; 0.97911, 0.97923, 0.91847 REMARK 200 MONOCHROMATOR : SI(III) MONOCHROMATOR; SI(III) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 24.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : 0.36900 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB V2.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8K, MAGNESIUM ACETATE, SODIUM REMARK 280 CACODYLATE, LITHIUM CHLORIDE, MAGNESIUM CHLORIDE, PAP, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.31750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.41350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.24650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.41350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.31750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.24650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 PRO A 79 REMARK 465 GLY A 80 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 5 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 81 CB CG CD OE1 OE2 REMARK 470 ASP A 83 OD1 OD2 REMARK 470 GLN A 84 CB CG CD OE1 NE2 REMARK 470 GLU A 85 CB CG CD OE1 OE2 REMARK 470 LYS A 108 NZ REMARK 470 LYS A 144 NZ REMARK 470 LYS A 189 CE NZ REMARK 470 LYS A 201 CD CE NZ REMARK 470 LYS A 274 NZ REMARK 470 GLU A 275 OE1 OE2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 BME A 801 O HOH A 916 2.00 REMARK 500 O HOH A 921 O HOH A 1082 2.06 REMARK 500 O HOH A 952 O HOH A 1128 2.06 REMARK 500 O HOH A 1218 O HOH A 1219 2.11 REMARK 500 N HIS A 5 O HOH A 1042 2.15 REMARK 500 SG CYS A 28 O HOH A 861 2.17 REMARK 500 O HOH A 967 O HOH A 989 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1005 O HOH A 1129 4555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 243 CA - CB - SG ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 40 -103.80 -93.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 74 OE1 REMARK 620 2 ASP A 117 OD1 89.5 REMARK 620 3 VAL A 119 O 167.5 86.4 REMARK 620 4 PO4 A 501 O3 97.9 95.7 94.3 REMARK 620 5 PO4 A 501 O4 100.1 162.9 86.9 69.2 REMARK 620 6 HOH A 811 O 84.6 103.4 84.8 160.8 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 74 OE2 REMARK 620 2 PO4 A 501 O1 99.4 REMARK 620 3 HOH A 929 O 84.6 80.1 REMARK 620 4 HOH A1216 O 83.0 116.7 160.6 REMARK 620 5 HOH A1217 O 90.5 151.3 74.1 91.2 REMARK 620 6 HOH A1218 O 163.3 86.3 80.9 108.6 77.6 REMARK 620 7 HOH A1219 O 141.3 79.4 132.1 64.2 109.1 55.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD2 REMARK 620 2 ASP A 120 OD1 96.6 REMARK 620 3 ASP A 247 OD1 93.0 92.1 REMARK 620 4 PO4 A 501 O3 90.1 105.0 162.2 REMARK 620 5 AMP A 601 O3' 169.9 87.5 96.1 79.9 REMARK 620 6 HOH A 840 O 95.7 164.4 77.8 84.5 81.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 801 DBREF 1JP4 A 1 308 UNP Q9Z1N4 BPNT1_RAT 1 308 SEQRES 1 A 308 MET ALA SER SER HIS ASN VAL LEU MET ARG LEU VAL ALA SEQRES 2 A 308 SER ALA TYR SER ILE ALA GLN LYS ALA GLY THR ILE VAL SEQRES 3 A 308 ARG CYS VAL ILE ALA GLU GLY ASP LEU GLY ILE VAL GLN SEQRES 4 A 308 LYS THR SER ALA THR ASP LEU GLN THR LYS ALA ASP ARG SEQRES 5 A 308 MET VAL GLN MET SER ILE CYS SER SER LEU SER ARG LYS SEQRES 6 A 308 PHE PRO LYS LEU THR ILE ILE GLY GLU GLU ASP LEU PRO SEQRES 7 A 308 PRO GLY GLU VAL ASP GLN GLU LEU ILE GLU ASP GLY GLN SEQRES 8 A 308 SER GLU GLU ILE LEU LYS GLN PRO CYS PRO SER GLN TYR SEQRES 9 A 308 SER ALA ILE LYS GLU GLU ASP LEU VAL VAL TRP VAL ASP SEQRES 10 A 308 PRO VAL ASP GLY THR LYS GLU TYR THR GLU GLY LEU LEU SEQRES 11 A 308 ASP ASN VAL THR VAL LEU ILE GLY ILE ALA TYR GLU GLY SEQRES 12 A 308 LYS ALA ILE ALA GLY ILE ILE ASN GLN PRO TYR TYR ASN SEQRES 13 A 308 TYR GLN ALA GLY PRO ASP ALA VAL LEU GLY ARG THR ILE SEQRES 14 A 308 TRP GLY VAL LEU GLY LEU GLY ALA PHE GLY PHE GLN LEU SEQRES 15 A 308 LYS GLU ALA PRO ALA GLY LYS HIS ILE ILE THR THR THR SEQRES 16 A 308 ARG SER HIS SER ASN LYS LEU VAL THR ASP CYS ILE ALA SEQRES 17 A 308 ALA MET ASN PRO ASP ASN VAL LEU ARG VAL GLY GLY ALA SEQRES 18 A 308 GLY ASN LYS ILE ILE GLN LEU ILE GLU GLY LYS ALA SER SEQRES 19 A 308 ALA TYR VAL PHE ALA SER PRO GLY CYS LYS LYS TRP ASP SEQRES 20 A 308 THR CYS ALA PRO GLU VAL ILE LEU HIS ALA VAL GLY GLY SEQRES 21 A 308 LYS LEU THR ASP ILE HIS GLY ASN PRO LEU GLN TYR ASP SEQRES 22 A 308 LYS GLU VAL LYS HIS MET ASN SER ALA GLY VAL LEU ALA SEQRES 23 A 308 ALA LEU ARG ASN TYR GLU TYR TYR ALA SER ARG VAL PRO SEQRES 24 A 308 GLU SER VAL LYS SER ALA LEU ILE PRO HET PO4 A 501 5 HET MG A 701 1 HET MG A 702 1 HET MG A 703 1 HET AMP A 601 23 HET BME A 801 4 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 PO4 O4 P 3- FORMUL 3 MG 3(MG 2+) FORMUL 6 AMP C10 H14 N5 O7 P FORMUL 7 BME C2 H6 O S FORMUL 8 HOH *418(H2 O) HELIX 1 1 ASN A 6 GLY A 33 1 28 HELIX 2 2 THR A 48 PHE A 66 1 19 HELIX 3 3 ASP A 83 ILE A 87 5 5 HELIX 4 4 SER A 92 LYS A 97 1 6 HELIX 5 5 PRO A 101 SER A 105 5 5 HELIX 6 6 LYS A 108 GLU A 110 5 3 HELIX 7 7 GLY A 121 GLU A 127 1 7 HELIX 8 8 LEU A 129 VAL A 133 5 5 HELIX 9 9 ASN A 200 ALA A 209 1 10 HELIX 10 10 GLY A 220 GLU A 230 1 11 HELIX 11 11 LYS A 244 VAL A 258 1 15 HELIX 12 12 ASN A 290 VAL A 298 1 9 HELIX 13 13 PRO A 299 LEU A 306 1 8 SHEET 1 A 2 VAL A 38 SER A 42 0 SHEET 2 A 2 ASP A 45 GLN A 47 -1 O ASP A 45 N LYS A 40 SHEET 1 B 6 THR A 70 GLY A 73 0 SHEET 2 B 6 LEU A 112 ASP A 120 1 O LEU A 112 N THR A 70 SHEET 3 B 6 THR A 134 TYR A 141 -1 O THR A 134 N ASP A 120 SHEET 4 B 6 LYS A 144 GLN A 152 -1 O LYS A 144 N TYR A 141 SHEET 5 B 6 ARG A 167 VAL A 172 -1 O ARG A 167 N GLN A 152 SHEET 6 B 6 GLY A 176 PHE A 178 -1 N GLY A 176 O VAL A 172 SHEET 1 C 5 ASN A 214 VAL A 218 0 SHEET 2 C 5 ILE A 191 THR A 195 1 O ILE A 192 N LEU A 216 SHEET 3 C 5 ALA A 235 PHE A 238 1 O ALA A 235 N THR A 193 SHEET 4 C 5 VAL A 284 ALA A 287 -1 O VAL A 284 N PHE A 238 SHEET 5 C 5 LYS A 261 THR A 263 -1 N LYS A 261 O ALA A 287 LINK SG CYS A 59 S2 BME A 801 1555 1555 1.97 LINK OE1 GLU A 74 MG MG A 702 1555 1555 2.04 LINK OE2 GLU A 74 MG MG A 703 1555 1555 2.07 LINK OD2 ASP A 117 MG MG A 701 1555 1555 2.01 LINK OD1 ASP A 117 MG MG A 702 1555 1555 2.08 LINK O VAL A 119 MG MG A 702 1555 1555 2.08 LINK OD1 ASP A 120 MG MG A 701 1555 1555 2.01 LINK OD1 ASP A 247 MG MG A 701 1555 1555 2.01 LINK O3 PO4 A 501 MG MG A 701 1555 1555 2.02 LINK O3 PO4 A 501 MG MG A 702 1555 1555 2.10 LINK O4 PO4 A 501 MG MG A 702 1555 1555 2.19 LINK O1 PO4 A 501 MG MG A 703 1555 1555 2.07 LINK O3' AMP A 601 MG MG A 701 1555 1555 2.24 LINK MG MG A 701 O HOH A 840 1555 1555 2.46 LINK MG MG A 702 O HOH A 811 1555 1555 2.14 LINK MG MG A 703 O HOH A 929 1555 1555 2.60 LINK MG MG A 703 O HOH A1216 1555 1555 2.36 LINK MG MG A 703 O HOH A1217 1555 1555 1.97 LINK MG MG A 703 O HOH A1218 1555 1555 2.06 LINK MG MG A 703 O HOH A1219 1555 1555 2.44 SITE 1 AC1 17 ASP A 51 GLU A 74 ASP A 117 VAL A 119 SITE 2 AC1 17 ASP A 120 GLY A 121 THR A 122 AMP A 601 SITE 3 AC1 17 MG A 701 MG A 702 MG A 703 HOH A 812 SITE 4 AC1 17 HOH A 840 HOH A 929 HOH A1216 HOH A1218 SITE 5 AC1 17 HOH A1219 SITE 1 AC2 7 ASP A 117 ASP A 120 ASP A 247 PO4 A 501 SITE 2 AC2 7 AMP A 601 MG A 702 HOH A 840 SITE 1 AC3 6 GLU A 74 ASP A 117 VAL A 119 PO4 A 501 SITE 2 AC3 6 MG A 701 HOH A 811 SITE 1 AC4 7 GLU A 74 PO4 A 501 HOH A 929 HOH A1216 SITE 2 AC4 7 HOH A1217 HOH A1218 HOH A1219 SITE 1 AC5 17 ASP A 120 THR A 195 HIS A 198 GLY A 219 SITE 2 AC5 17 GLY A 220 LYS A 224 PHE A 238 GLY A 242 SITE 3 AC5 17 CYS A 243 ASP A 247 PO4 A 501 MG A 701 SITE 4 AC5 17 HOH A 828 HOH A 840 HOH A 853 HOH A 900 SITE 5 AC5 17 HOH A 929 SITE 1 AC6 6 GLN A 55 CYS A 59 ILE A 71 GLY A 73 SITE 2 AC6 6 HOH A 916 HOH A1117 CRYST1 48.635 74.493 92.827 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010773 0.00000