data_1JPQ # _entry.id 1JPQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JPQ pdb_00001jpq 10.2210/pdb1jpq/pdb NDB UD0013 ? ? RCSB RCSB014042 ? ? WWPDB D_1000014042 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-06-28 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Experimental preparation' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_conn_type 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.pdbx_details' 2 4 'Structure model' '_exptl_crystal_grow.temp' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.value' 23 5 'Structure model' '_struct_conn.conn_type_id' 24 5 'Structure model' '_struct_conn.id' 25 5 'Structure model' '_struct_conn.pdbx_dist_value' 26 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 5 'Structure model' '_struct_conn_type.id' 42 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 43 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 44 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JPQ _pdbx_database_status.recvd_initial_deposition_date 2001-08-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Haider, S.M.' 1 'Parkinson, G.' 2 'Neidle, S.' 3 # _citation.id primary _citation.title 'Crystal structure of the potassium form of an Oxytricha nova G-quadruplex.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 320 _citation.page_first 189 _citation.page_last 200 _citation.year 2002 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12079378 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)00428-X' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Haider, S.' 1 ? primary 'Parkinson, G.N.' 2 ? primary 'Neidle, S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*TP*GP*GP*GP*G)-3'" 3870.330 2 ? ? ? 'OXYTRICHA TELOMERIC SEQUENCE' 2 non-polymer syn 'POTASSIUM ION' 39.098 5 ? ? ? ? 3 water nat water 18.015 131 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DG)(DG)(BRU)(DT)(DT)(DT)(DG)(DG)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGGGUTTTGGGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 BRU n 1 6 DT n 1 7 DT n 1 8 DT n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This is the Oxytricha nova telomeric sequence' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1001 1001 DG G A . n A 1 2 DG 2 1002 1002 DG G A . n A 1 3 DG 3 1003 1003 DG G A . n A 1 4 DG 4 1004 1004 DG G A . n A 1 5 BRU 5 1005 1005 BRU U A . n A 1 6 DT 6 1006 1006 DT T A . n A 1 7 DT 7 1007 1007 DT T A . n A 1 8 DT 8 1008 1008 DT T A . n A 1 9 DG 9 1009 1009 DG G A . n A 1 10 DG 10 1010 1010 DG G A . n A 1 11 DG 11 1011 1011 DG G A . n A 1 12 DG 12 1012 1012 DG G A . n B 1 1 DG 1 2001 2001 DG G B . n B 1 2 DG 2 2002 2002 DG G B . n B 1 3 DG 3 2003 2003 DG G B . n B 1 4 DG 4 2004 2004 DG G B . n B 1 5 BRU 5 2005 2005 BRU U B . n B 1 6 DT 6 2006 2006 DT T B . n B 1 7 DT 7 2007 2007 DT T B . n B 1 8 DT 8 2008 2008 DT T B . n B 1 9 DG 9 2009 2009 DG G B . n B 1 10 DG 10 2010 2010 DG G B . n B 1 11 DG 11 2011 2011 DG G B . n B 1 12 DG 12 2012 2012 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 3014 3014 K K A . D 2 K 1 3015 3015 K K A . E 2 K 1 3016 3016 K K A . F 2 K 1 3017 3017 K K A . G 2 K 1 3013 3013 K K B . H 3 HOH 1 7002 7002 HOH HOH A . H 3 HOH 2 7003 7003 HOH HOH A . H 3 HOH 3 7004 7004 HOH HOH A . H 3 HOH 4 7005 7005 HOH HOH A . H 3 HOH 5 7006 7006 HOH HOH A . H 3 HOH 6 7013 7013 HOH HOH A . H 3 HOH 7 7014 7014 HOH HOH A . H 3 HOH 8 7015 7015 HOH HOH A . H 3 HOH 9 7017 7017 HOH HOH A . H 3 HOH 10 7018 7018 HOH HOH A . H 3 HOH 11 7019 7019 HOH HOH A . H 3 HOH 12 7022 7022 HOH HOH A . H 3 HOH 13 7023 7023 HOH HOH A . H 3 HOH 14 7024 7024 HOH HOH A . H 3 HOH 15 7027 7027 HOH HOH A . H 3 HOH 16 7029 7029 HOH HOH A . H 3 HOH 17 7031 7031 HOH HOH A . H 3 HOH 18 7033 7033 HOH HOH A . H 3 HOH 19 7034 7034 HOH HOH A . H 3 HOH 20 7035 7035 HOH HOH A . H 3 HOH 21 7036 7036 HOH HOH A . H 3 HOH 22 7037 7037 HOH HOH A . H 3 HOH 23 7038 7038 HOH HOH A . H 3 HOH 24 7039 7039 HOH HOH A . H 3 HOH 25 7041 7041 HOH HOH A . H 3 HOH 26 7042 7042 HOH HOH A . H 3 HOH 27 7043 7043 HOH HOH A . H 3 HOH 28 7044 7044 HOH HOH A . H 3 HOH 29 7045 7045 HOH HOH A . H 3 HOH 30 7046 7046 HOH HOH A . H 3 HOH 31 7049 7049 HOH HOH A . H 3 HOH 32 7052 7052 HOH HOH A . H 3 HOH 33 7054 7054 HOH HOH A . H 3 HOH 34 7055 7055 HOH HOH A . H 3 HOH 35 7056 7056 HOH HOH A . H 3 HOH 36 7059 7059 HOH HOH A . H 3 HOH 37 7060 7060 HOH HOH A . H 3 HOH 38 7062 7062 HOH HOH A . H 3 HOH 39 7064 7064 HOH HOH A . H 3 HOH 40 7065 7065 HOH HOH A . H 3 HOH 41 7068 7068 HOH HOH A . H 3 HOH 42 7070 7070 HOH HOH A . H 3 HOH 43 7085 7085 HOH HOH A . H 3 HOH 44 7086 7086 HOH HOH A . H 3 HOH 45 7088 7088 HOH HOH A . H 3 HOH 46 7091 7091 HOH HOH A . H 3 HOH 47 7092 7092 HOH HOH A . H 3 HOH 48 7096 7096 HOH HOH A . H 3 HOH 49 7097 7097 HOH HOH A . H 3 HOH 50 7098 7098 HOH HOH A . H 3 HOH 51 7099 7099 HOH HOH A . H 3 HOH 52 7100 7100 HOH HOH A . H 3 HOH 53 7101 7101 HOH HOH A . H 3 HOH 54 7102 7102 HOH HOH A . H 3 HOH 55 7103 7103 HOH HOH A . H 3 HOH 56 7104 7104 HOH HOH A . H 3 HOH 57 7108 7108 HOH HOH A . H 3 HOH 58 7110 7110 HOH HOH A . H 3 HOH 59 7115 7115 HOH HOH A . H 3 HOH 60 7116 7116 HOH HOH A . H 3 HOH 61 7118 7118 HOH HOH A . H 3 HOH 62 7121 7121 HOH HOH A . H 3 HOH 63 7122 7122 HOH HOH A . H 3 HOH 64 7125 7125 HOH HOH A . H 3 HOH 65 7126 7126 HOH HOH A . H 3 HOH 66 7128 7128 HOH HOH A . H 3 HOH 67 7133 7133 HOH HOH A . H 3 HOH 68 7135 7135 HOH HOH A . H 3 HOH 69 7137 7137 HOH HOH A . H 3 HOH 70 7138 7138 HOH HOH A . I 3 HOH 1 7001 7001 HOH HOH B . I 3 HOH 2 7007 7007 HOH HOH B . I 3 HOH 3 7008 7008 HOH HOH B . I 3 HOH 4 7009 7009 HOH HOH B . I 3 HOH 5 7010 7010 HOH HOH B . I 3 HOH 6 7011 7011 HOH HOH B . I 3 HOH 7 7012 7012 HOH HOH B . I 3 HOH 8 7016 7016 HOH HOH B . I 3 HOH 9 7020 7020 HOH HOH B . I 3 HOH 10 7021 7021 HOH HOH B . I 3 HOH 11 7025 7025 HOH HOH B . I 3 HOH 12 7026 7026 HOH HOH B . I 3 HOH 13 7028 7028 HOH HOH B . I 3 HOH 14 7030 7030 HOH HOH B . I 3 HOH 15 7032 7032 HOH HOH B . I 3 HOH 16 7040 7040 HOH HOH B . I 3 HOH 17 7047 7047 HOH HOH B . I 3 HOH 18 7048 7048 HOH HOH B . I 3 HOH 19 7050 7050 HOH HOH B . I 3 HOH 20 7051 7051 HOH HOH B . I 3 HOH 21 7053 7053 HOH HOH B . I 3 HOH 22 7057 7057 HOH HOH B . I 3 HOH 23 7058 7058 HOH HOH B . I 3 HOH 24 7061 7061 HOH HOH B . I 3 HOH 25 7063 7063 HOH HOH B . I 3 HOH 26 7066 7066 HOH HOH B . I 3 HOH 27 7069 7069 HOH HOH B . I 3 HOH 28 7071 7071 HOH HOH B . I 3 HOH 29 7073 7073 HOH HOH B . I 3 HOH 30 7074 7074 HOH HOH B . I 3 HOH 31 7075 7075 HOH HOH B . I 3 HOH 32 7076 7076 HOH HOH B . I 3 HOH 33 7077 7077 HOH HOH B . I 3 HOH 34 7078 7078 HOH HOH B . I 3 HOH 35 7079 7079 HOH HOH B . I 3 HOH 36 7080 7080 HOH HOH B . I 3 HOH 37 7081 7081 HOH HOH B . I 3 HOH 38 7082 7082 HOH HOH B . I 3 HOH 39 7083 7083 HOH HOH B . I 3 HOH 40 7084 7084 HOH HOH B . I 3 HOH 41 7087 7087 HOH HOH B . I 3 HOH 42 7090 7090 HOH HOH B . I 3 HOH 43 7093 7093 HOH HOH B . I 3 HOH 44 7094 7094 HOH HOH B . I 3 HOH 45 7095 7095 HOH HOH B . I 3 HOH 46 7105 7105 HOH HOH B . I 3 HOH 47 7106 7106 HOH HOH B . I 3 HOH 48 7107 7107 HOH HOH B . I 3 HOH 49 7109 7109 HOH HOH B . I 3 HOH 50 7111 7111 HOH HOH B . I 3 HOH 51 7112 7112 HOH HOH B . I 3 HOH 52 7113 7113 HOH HOH B . I 3 HOH 53 7114 7114 HOH HOH B . I 3 HOH 54 7117 7117 HOH HOH B . I 3 HOH 55 7120 7120 HOH HOH B . I 3 HOH 56 7123 7123 HOH HOH B . I 3 HOH 57 7124 7124 HOH HOH B . I 3 HOH 58 7127 7127 HOH HOH B . I 3 HOH 59 7129 7129 HOH HOH B . I 3 HOH 60 7130 7130 HOH HOH B . I 3 HOH 61 7132 7132 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1JPQ _cell.length_a 27.543 _cell.length_b 27.543 _cell.length_c 145.817 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JPQ _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # _exptl.entry_id 1JPQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.37 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 285.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;potassium chloride, magnesium chloride, spermine, MPD, potassium cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 12K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 KCl ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 spermine ? ? ? 1 4 1 MPD ? ? ? 1 5 1 'potassium cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2000-11-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 0.98 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 # _reflns.entry_id 1JPQ _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F 3 _reflns.d_resolution_low 99 _reflns.d_resolution_high 1.6 _reflns.number_obs 8862 _reflns.number_all 9146 _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.226 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.38 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JPQ _refine.ls_number_reflns_obs 8862 _refine.ls_number_reflns_all 9146 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 99 _refine.ls_d_res_high 1.6 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2293 _refine.ls_R_factor_all 0.2439 _refine.ls_R_factor_R_work 0.225 _refine.ls_R_factor_R_free 0.2759 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 886 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'every 10th reflection' _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 504 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 642 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.018 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0005 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.059 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.007 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1JPQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1JPQ _struct.title 'Crystal Structure of the Oxytricha Telomeric DNA at 1.6A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JPQ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Oxytricha, G-Quartets, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1JPQ _struct_ref.pdbx_db_accession 1JPQ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JPQ A 1 ? 12 ? 1JPQ 1001 ? 1012 ? 1001 1012 2 1 1JPQ B 1 ? 12 ? 1JPQ 2001 ? 2012 ? 2001 2012 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A BRU 5 P ? ? A DG 1004 A BRU 1005 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? A BRU 5 "O3'" ? ? ? 1_555 A DT 6 P ? ? A BRU 1005 A DT 1006 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale3 covale both ? B DG 4 "O3'" ? ? ? 1_555 B BRU 5 P ? ? B DG 2004 B BRU 2005 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale4 covale both ? B BRU 5 "O3'" ? ? ? 1_555 B DT 6 P ? ? B BRU 2005 B DT 2006 1_555 ? ? ? ? ? ? ? 1.602 ? ? metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 C K . K ? ? A DG 1001 A K 3014 1_555 ? ? ? ? ? ? ? 2.739 ? ? metalc2 metalc ? ? A DG 1 O6 ? ? ? 1_555 G K . K ? ? A DG 1001 B K 3013 1_555 ? ? ? ? ? ? ? 3.080 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 1002 A K 3014 1_555 ? ? ? ? ? ? ? 2.986 ? ? metalc4 metalc ? ? A DG 2 O6 ? ? ? 1_555 D K . K ? ? A DG 1002 A K 3015 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc5 metalc ? ? A DG 3 O6 ? ? ? 1_555 D K . K ? ? A DG 1003 A K 3015 1_555 ? ? ? ? ? ? ? 2.850 ? ? metalc6 metalc ? ? A DG 3 O6 ? ? ? 1_555 E K . K ? ? A DG 1003 A K 3016 1_555 ? ? ? ? ? ? ? 2.815 ? ? metalc7 metalc ? ? A DG 4 O6 ? ? ? 1_555 E K . K ? ? A DG 1004 A K 3016 1_555 ? ? ? ? ? ? ? 2.742 ? ? metalc8 metalc ? ? A DG 4 O6 ? ? ? 1_555 F K . K ? ? A DG 1004 A K 3017 1_555 ? ? ? ? ? ? ? 2.904 ? ? metalc9 metalc ? ? A BRU 5 O2 ? ? ? 1_555 F K . K ? ? A BRU 1005 A K 3017 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc10 metalc ? ? A DT 7 O2 ? ? ? 1_555 F K . K ? ? A DT 1007 A K 3017 1_555 ? ? ? ? ? ? ? 2.632 ? ? metalc11 metalc ? ? A DG 9 O6 ? ? ? 1_555 E K . K ? ? A DG 1009 A K 3016 1_555 ? ? ? ? ? ? ? 2.823 ? ? metalc12 metalc ? ? A DG 9 O6 ? ? ? 1_555 F K . K ? ? A DG 1009 A K 3017 1_555 ? ? ? ? ? ? ? 2.868 ? ? metalc13 metalc ? ? A DG 10 O6 ? ? ? 1_555 D K . K ? ? A DG 1010 A K 3015 1_555 ? ? ? ? ? ? ? 2.728 ? ? metalc14 metalc ? ? A DG 10 O6 ? ? ? 1_555 E K . K ? ? A DG 1010 A K 3016 1_555 ? ? ? ? ? ? ? 2.800 ? ? metalc15 metalc ? ? A DG 11 O6 ? ? ? 1_555 C K . K ? ? A DG 1011 A K 3014 1_555 ? ? ? ? ? ? ? 2.865 ? ? metalc16 metalc ? ? A DG 11 O6 ? ? ? 1_555 D K . K ? ? A DG 1011 A K 3015 1_555 ? ? ? ? ? ? ? 2.846 ? ? metalc17 metalc ? ? A DG 12 O6 ? ? ? 1_555 C K . K ? ? A DG 1012 A K 3014 1_555 ? ? ? ? ? ? ? 2.675 ? ? metalc18 metalc ? ? A DG 12 O6 ? ? ? 1_555 G K . K ? ? A DG 1012 B K 3013 1_555 ? ? ? ? ? ? ? 2.873 ? ? metalc19 metalc ? ? C K . K ? ? ? 1_555 D K . K ? ? A K 3014 A K 3015 1_555 ? ? ? ? ? ? ? 3.376 ? ? metalc20 metalc ? ? C K . K ? ? ? 1_555 B DG 3 O6 ? ? A K 3014 B DG 2003 1_555 ? ? ? ? ? ? ? 2.886 ? ? metalc21 metalc ? ? C K . K ? ? ? 1_555 B DG 4 O6 ? ? A K 3014 B DG 2004 1_555 ? ? ? ? ? ? ? 2.784 ? ? metalc22 metalc ? ? C K . K ? ? ? 1_555 B DG 9 O6 ? ? A K 3014 B DG 2009 1_555 ? ? ? ? ? ? ? 2.685 ? ? metalc23 metalc ? ? C K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 3014 B DG 2010 1_555 ? ? ? ? ? ? ? 2.669 ? ? metalc24 metalc ? ? C K . K ? ? ? 1_555 G K . K ? ? A K 3014 B K 3013 1_555 ? ? ? ? ? ? ? 3.514 ? ? metalc25 metalc ? ? D K . K ? ? ? 1_555 E K . K ? ? A K 3015 A K 3016 1_555 ? ? ? ? ? ? ? 3.394 ? ? metalc26 metalc ? ? D K . K ? ? ? 1_555 B DG 2 O6 ? ? A K 3015 B DG 2002 1_555 ? ? ? ? ? ? ? 2.782 ? ? metalc27 metalc ? ? D K . K ? ? ? 1_555 B DG 3 O6 ? ? A K 3015 B DG 2003 1_555 ? ? ? ? ? ? ? 2.751 ? ? metalc28 metalc ? ? D K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 3015 B DG 2010 1_555 ? ? ? ? ? ? ? 2.749 ? ? metalc29 metalc ? ? D K . K ? ? ? 1_555 B DG 11 O6 ? ? A K 3015 B DG 2011 1_555 ? ? ? ? ? ? ? 2.912 ? ? metalc30 metalc ? ? E K . K ? ? ? 1_555 F K . K ? ? A K 3016 A K 3017 1_555 ? ? ? ? ? ? ? 3.514 ? ? metalc31 metalc ? ? E K . K ? ? ? 1_555 B DG 1 O6 ? ? A K 3016 B DG 2001 1_555 ? ? ? ? ? ? ? 2.740 ? ? metalc32 metalc ? ? E K . K ? ? ? 1_555 B DG 2 O6 ? ? A K 3016 B DG 2002 1_555 ? ? ? ? ? ? ? 2.979 ? ? metalc33 metalc ? ? E K . K ? ? ? 1_555 B DG 11 O6 ? ? A K 3016 B DG 2011 1_555 ? ? ? ? ? ? ? 2.831 ? ? metalc34 metalc ? ? E K . K ? ? ? 1_555 B DG 12 O6 ? ? A K 3016 B DG 2012 1_555 ? ? ? ? ? ? ? 2.753 ? ? metalc35 metalc ? ? F K . K ? ? ? 1_555 B DG 1 O6 ? ? A K 3017 B DG 2001 1_555 ? ? ? ? ? ? ? 3.164 ? ? metalc36 metalc ? ? F K . K ? ? ? 1_555 B DG 12 O6 ? ? A K 3017 B DG 2012 1_555 ? ? ? ? ? ? ? 2.816 ? ? metalc37 metalc ? ? B DG 4 O6 ? ? ? 1_555 G K . K ? ? B DG 2004 B K 3013 1_555 ? ? ? ? ? ? ? 3.001 ? ? metalc38 metalc ? ? B BRU 5 O2 ? ? ? 1_555 G K . K ? ? B BRU 2005 B K 3013 1_555 ? ? ? ? ? ? ? 2.720 ? ? metalc39 metalc ? ? B BRU 5 N3 ? ? ? 1_555 G K . K ? ? B BRU 2005 B K 3013 1_555 ? ? ? ? ? ? ? 3.308 ? ? metalc40 metalc ? ? B DT 7 O2 ? ? ? 1_555 G K . K ? ? B DT 2007 B K 3013 1_555 ? ? ? ? ? ? ? 2.674 ? ? metalc41 metalc ? ? B DG 9 O6 ? ? ? 1_555 G K . K ? ? B DG 2009 B K 3013 1_555 ? ? ? ? ? ? ? 2.877 ? ? metalc42 metalc ? ? G K . K ? ? ? 1_555 I HOH . O ? ? B K 3013 B HOH 7016 1_555 ? ? ? ? ? ? ? 3.206 ? ? hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 B DG 4 N2 ? ? A DG 1001 B DG 2004 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DG 4 N1 ? ? A DG 1001 B DG 2004 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DG 9 O6 ? ? A DG 1001 B DG 2009 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DG 9 N7 ? ? A DG 1001 B DG 2009 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 1002 B DG 2003 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 1002 B DG 2003 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 10 N2 ? ? A DG 1002 B DG 2010 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 10 N1 ? ? A DG 1002 B DG 2010 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 2 N2 ? ? A DG 1003 B DG 2002 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 2 N1 ? ? A DG 1003 B DG 2002 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DG 11 O6 ? ? A DG 1003 B DG 2011 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DG 11 N7 ? ? A DG 1003 B DG 2011 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DG 1 O6 ? ? A DG 1004 B DG 2001 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DG 1 N7 ? ? A DG 1004 B DG 2001 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 12 N2 ? ? A DG 1004 B DG 2012 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 12 N1 ? ? A DG 1004 B DG 2012 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A BRU 5 O2 ? ? ? 1_555 A DT 7 N3 ? ? A BRU 1005 A DT 1007 1_555 ? ? ? ? ? ? 'BRU-DT MISPAIR' ? ? ? hydrog18 hydrog ? ? A DG 9 N7 ? ? ? 1_555 B DG 1 N2 ? ? A DG 1009 B DG 2001 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DG 1 N1 ? ? A DG 1009 B DG 2001 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DG 12 O6 ? ? A DG 1009 B DG 2012 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DG 12 N7 ? ? A DG 1009 B DG 2012 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DG 2 O6 ? ? A DG 1010 B DG 2002 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DG 2 N7 ? ? A DG 1010 B DG 2002 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 10 N7 ? ? ? 1_555 B DG 11 N2 ? ? A DG 1010 B DG 2011 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DG 11 N1 ? ? A DG 1010 B DG 2011 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 11 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DG 1011 B DG 2003 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DG 3 N1 ? ? A DG 1011 B DG 2003 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DG 10 O6 ? ? A DG 1011 B DG 2010 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DG 10 N7 ? ? A DG 1011 B DG 2010 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 1012 B DG 2004 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DG 4 N7 ? ? A DG 1012 B DG 2004 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B BRU 5 O4 ? ? A DG 1012 B BRU 2005 1_555 ? ? ? ? ? ? 'DG-BRU MISPAIR' ? ? ? hydrog33 hydrog ? ? A DG 12 N7 ? ? ? 1_555 B DG 9 N2 ? ? A DG 1012 B DG 2009 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DG 9 N1 ? ? A DG 1012 B DG 2009 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? B BRU 5 O2 ? ? ? 1_555 B DT 7 N3 ? ? B BRU 2005 B DT 2007 1_555 ? ? ? ? ? ? 'BRU-DT MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? A DG 2 ? A DG 1002 ? 1_555 68.1 ? 2 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? A DG 11 ? A DG 1011 ? 1_555 163.4 ? 3 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? A DG 11 ? A DG 1011 ? 1_555 102.1 ? 4 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? A DG 12 ? A DG 1012 ? 1_555 110.6 ? 5 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? A DG 12 ? A DG 1012 ? 1_555 177.1 ? 6 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? A DG 12 ? A DG 1012 ? 1_555 79.8 ? 7 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? D K . ? A K 3015 ? 1_555 116.2 ? 8 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? D K . ? A K 3015 ? 1_555 48.7 ? 9 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? D K . ? A K 3015 ? 1_555 53.5 ? 10 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? D K . ? A K 3015 ? 1_555 132.9 ? 11 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 98.4 ? 12 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 65.4 ? 13 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 65.0 ? 14 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 117.6 ? 15 K ? D K . ? A K 3015 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 51.4 ? 16 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 4 ? B DG 2004 ? 1_555 70.0 ? 17 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 4 ? B DG 2004 ? 1_555 112.1 ? 18 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 4 ? B DG 2004 ? 1_555 103.3 ? 19 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 4 ? B DG 2004 ? 1_555 69.4 ? 20 K ? D K . ? A K 3015 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 4 ? B DG 2004 ? 1_555 122.3 ? 21 O6 ? B DG 3 ? B DG 2003 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 4 ? B DG 2004 ? 1_555 70.9 ? 22 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 72.5 ? 23 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 106.5 ? 24 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 124.0 ? 25 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 70.6 ? 26 K ? D K . ? A K 3015 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 128.4 ? 27 O6 ? B DG 3 ? B DG 2003 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 170.0 ? 28 O6 ? B DG 4 ? B DG 2004 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 108.8 ? 29 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 115.0 ? 30 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 67.9 ? 31 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 70.7 ? 32 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 110.9 ? 33 K ? D K . ? A K 3015 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 52.5 ? 34 O6 ? B DG 3 ? B DG 2003 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 103.9 ? 35 O6 ? B DG 4 ? B DG 2004 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 173.6 ? 36 O6 ? B DG 9 ? B DG 2009 ? 1_555 K ? C K . ? A K 3014 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 77.0 ? 37 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? G K . ? B K 3013 ? 1_555 57.4 ? 38 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? G K . ? B K 3013 ? 1_555 125.2 ? 39 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? G K . ? B K 3013 ? 1_555 132.1 ? 40 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? G K . ? B K 3013 ? 1_555 53.2 ? 41 K ? D K . ? A K 3015 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? G K . ? B K 3013 ? 1_555 173.4 ? 42 O6 ? B DG 3 ? B DG 2003 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? G K . ? B K 3013 ? 1_555 125.6 ? 43 O6 ? B DG 4 ? B DG 2004 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? G K . ? B K 3013 ? 1_555 55.5 ? 44 O6 ? B DG 9 ? B DG 2009 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? G K . ? B K 3013 ? 1_555 53.3 ? 45 O6 ? B DG 10 ? B DG 2010 ? 1_555 K ? C K . ? A K 3014 ? 1_555 K ? G K . ? B K 3013 ? 1_555 130.2 ? 46 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O6 ? A DG 12 ? A DG 1012 ? 1_555 96.7 ? 47 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O6 ? B DG 4 ? B DG 2004 ? 1_555 62.8 ? 48 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O6 ? B DG 4 ? B DG 2004 ? 1_555 63.9 ? 49 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O2 ? B BRU 5 ? B BRU 2005 ? 1_555 85.8 ? 50 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O2 ? B BRU 5 ? B BRU 2005 ? 1_555 131.9 ? 51 O6 ? B DG 4 ? B DG 2004 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O2 ? B BRU 5 ? B BRU 2005 ? 1_555 75.3 ? 52 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? G K . ? B K 3013 ? 1_555 N3 ? B BRU 5 ? B BRU 2005 ? 1_555 116.7 ? 53 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? G K . ? B K 3013 ? 1_555 N3 ? B BRU 5 ? B BRU 2005 ? 1_555 97.3 ? 54 O6 ? B DG 4 ? B DG 2004 ? 1_555 K ? G K . ? B K 3013 ? 1_555 N3 ? B BRU 5 ? B BRU 2005 ? 1_555 69.5 ? 55 O2 ? B BRU 5 ? B BRU 2005 ? 1_555 K ? G K . ? B K 3013 ? 1_555 N3 ? B BRU 5 ? B BRU 2005 ? 1_555 42.5 ? 56 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O2 ? B DT 7 ? B DT 2007 ? 1_555 75.2 ? 57 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O2 ? B DT 7 ? B DT 2007 ? 1_555 150.2 ? 58 O6 ? B DG 4 ? B DG 2004 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O2 ? B DT 7 ? B DT 2007 ? 1_555 130.6 ? 59 O2 ? B BRU 5 ? B BRU 2005 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O2 ? B DT 7 ? B DT 2007 ? 1_555 76.8 ? 60 N3 ? B BRU 5 ? B BRU 2005 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O2 ? B DT 7 ? B DT 2007 ? 1_555 112.1 ? 61 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 65.0 ? 62 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 65.2 ? 63 O6 ? B DG 4 ? B DG 2004 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 98.2 ? 64 O2 ? B BRU 5 ? B BRU 2005 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 149.1 ? 65 N3 ? B BRU 5 ? B BRU 2005 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 162.1 ? 66 O2 ? B DT 7 ? B DT 2007 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O6 ? B DG 9 ? B DG 2009 ? 1_555 85.7 ? 67 O6 ? A DG 1 ? A DG 1001 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O ? I HOH . ? B HOH 7016 ? 1_555 156.3 ? 68 O6 ? A DG 12 ? A DG 1012 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O ? I HOH . ? B HOH 7016 ? 1_555 70.3 ? 69 O6 ? B DG 4 ? B DG 2004 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O ? I HOH . ? B HOH 7016 ? 1_555 93.5 ? 70 O2 ? B BRU 5 ? B BRU 2005 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O ? I HOH . ? B HOH 7016 ? 1_555 88.7 ? 71 N3 ? B BRU 5 ? B BRU 2005 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O ? I HOH . ? B HOH 7016 ? 1_555 49.0 ? 72 O2 ? B DT 7 ? B DT 2007 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O ? I HOH . ? B HOH 7016 ? 1_555 125.8 ? 73 O6 ? B DG 9 ? B DG 2009 ? 1_555 K ? G K . ? B K 3013 ? 1_555 O ? I HOH . ? B HOH 7016 ? 1_555 122.0 ? 74 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? A DG 3 ? A DG 1003 ? 1_555 89.7 ? 75 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? A DG 10 ? A DG 1010 ? 1_555 131.3 ? 76 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? A DG 10 ? A DG 1010 ? 1_555 105.8 ? 77 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? A DG 11 ? A DG 1011 ? 1_555 111.8 ? 78 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? A DG 11 ? A DG 1011 ? 1_555 129.1 ? 79 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? A DG 11 ? A DG 1011 ? 1_555 93.8 ? 80 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 K ? E K . ? A K 3016 ? 1_555 121.4 ? 81 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? D K . ? A K 3015 ? 1_555 K ? E K . ? A K 3016 ? 1_555 52.7 ? 82 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? D K . ? A K 3015 ? 1_555 K ? E K . ? A K 3016 ? 1_555 53.1 ? 83 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? D K . ? A K 3015 ? 1_555 K ? E K . ? A K 3016 ? 1_555 126.8 ? 84 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 155.5 ? 85 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 69.9 ? 86 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 69.6 ? 87 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 74.1 ? 88 K ? E K . ? A K 3016 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 56.6 ? 89 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 71.9 ? 90 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 78.1 ? 91 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 155.7 ? 92 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 67.0 ? 93 K ? E K . ? A K 3016 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 126.4 ? 94 O6 ? B DG 2 ? B DG 2002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 3 ? B DG 2003 ? 1_555 90.1 ? 95 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 71.9 ? 96 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 158.5 ? 97 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 79.9 ? 98 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 69.9 ? 99 K ? E K . ? A K 3016 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 128.1 ? 100 O6 ? B DG 2 ? B DG 2002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 130.5 ? 101 O6 ? B DG 3 ? B DG 2003 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 10 ? B DG 2010 ? 1_555 105.4 ? 102 O6 ? A DG 2 ? A DG 1002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 73.9 ? 103 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 69.1 ? 104 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 69.6 ? 105 O6 ? A DG 11 ? A DG 1011 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 159.4 ? 106 K ? E K . ? A K 3016 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 52.7 ? 107 O6 ? B DG 2 ? B DG 2002 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 109.3 ? 108 O6 ? B DG 3 ? B DG 2003 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 132.1 ? 109 O6 ? B DG 10 ? B DG 2010 ? 1_555 K ? D K . ? A K 3015 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 94.5 ? 110 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? A DG 4 ? A DG 1004 ? 1_555 73.3 ? 111 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? A DG 9 ? A DG 1009 ? 1_555 167.5 ? 112 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? A DG 9 ? A DG 1009 ? 1_555 105.9 ? 113 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? A DG 10 ? A DG 1010 ? 1_555 104.8 ? 114 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? A DG 10 ? A DG 1010 ? 1_555 177.5 ? 115 O6 ? A DG 9 ? A DG 1009 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? A DG 10 ? A DG 1010 ? 1_555 76.3 ? 116 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? E K . ? A K 3016 ? 1_555 K ? F K . ? A K 3017 ? 1_555 126.3 ? 117 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? E K . ? A K 3016 ? 1_555 K ? F K . ? A K 3017 ? 1_555 53.6 ? 118 O6 ? A DG 9 ? A DG 1009 ? 1_555 K ? E K . ? A K 3016 ? 1_555 K ? F K . ? A K 3017 ? 1_555 52.4 ? 119 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? E K . ? A K 3016 ? 1_555 K ? F K . ? A K 3017 ? 1_555 128.5 ? 120 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 1 ? B DG 2001 ? 1_555 99.3 ? 121 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 1 ? B DG 2001 ? 1_555 71.4 ? 122 O6 ? A DG 9 ? A DG 1009 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 1 ? B DG 2001 ? 1_555 69.1 ? 123 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 1 ? B DG 2001 ? 1_555 110.8 ? 124 K ? F K . ? A K 3017 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 1 ? B DG 2001 ? 1_555 59.3 ? 125 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 67.6 ? 126 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 114.5 ? 127 O6 ? A DG 9 ? A DG 1009 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 102.3 ? 128 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 65.9 ? 129 K ? F K . ? A K 3017 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 124.6 ? 130 O6 ? B DG 1 ? B DG 2001 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 2 ? B DG 2002 ? 1_555 65.8 ? 131 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 70.7 ? 132 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 107.8 ? 133 O6 ? A DG 9 ? A DG 1009 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 120.5 ? 134 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 69.8 ? 135 K ? F K . ? A K 3017 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 129.2 ? 136 O6 ? B DG 1 ? B DG 2001 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 169.4 ? 137 O6 ? B DG 2 ? B DG 2002 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 11 ? B DG 2011 ? 1_555 106.1 ? 138 O6 ? A DG 3 ? A DG 1003 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 119.9 ? 139 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 69.4 ? 140 O6 ? A DG 9 ? A DG 1009 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 70.2 ? 141 O6 ? A DG 10 ? A DG 1010 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 110.5 ? 142 K ? F K . ? A K 3017 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 51.7 ? 143 O6 ? B DG 1 ? B DG 2001 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 110.9 ? 144 O6 ? B DG 2 ? B DG 2002 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 172.5 ? 145 O6 ? B DG 11 ? B DG 2011 ? 1_555 K ? E K . ? A K 3016 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 77.9 ? 146 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O2 ? A BRU 5 ? A BRU 1005 ? 1_555 74.3 ? 147 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O2 ? A DT 7 ? A DT 1007 ? 1_555 128.1 ? 148 O2 ? A BRU 5 ? A BRU 1005 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O2 ? A DT 7 ? A DT 1007 ? 1_555 78.5 ? 149 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? A DG 9 ? A DG 1009 ? 1_555 100.6 ? 150 O2 ? A BRU 5 ? A BRU 1005 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? A DG 9 ? A DG 1009 ? 1_555 152.1 ? 151 O2 ? A DT 7 ? A DT 1007 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? A DG 9 ? A DG 1009 ? 1_555 84.1 ? 152 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? B DG 1 ? B DG 2001 ? 1_555 63.4 ? 153 O2 ? A BRU 5 ? A BRU 1005 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? B DG 1 ? B DG 2001 ? 1_555 91.2 ? 154 O2 ? A DT 7 ? A DT 1007 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? B DG 1 ? B DG 2001 ? 1_555 74.1 ? 155 O6 ? A DG 9 ? A DG 1009 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? B DG 1 ? B DG 2001 ? 1_555 62.9 ? 156 O6 ? A DG 4 ? A DG 1004 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 66.3 ? 157 O2 ? A BRU 5 ? A BRU 1005 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 129.2 ? 158 O2 ? A DT 7 ? A DT 1007 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 151.9 ? 159 O6 ? A DG 9 ? A DG 1009 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 68.7 ? 160 O6 ? B DG 1 ? B DG 2001 ? 1_555 K ? F K . ? A K 3017 ? 1_555 O6 ? B DG 12 ? B DG 2012 ? 1_555 98.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B K 3013 ? 7 'BINDING SITE FOR RESIDUE K B 3013' AC2 Software A K 3014 ? 10 'BINDING SITE FOR RESIDUE K A 3014' AC3 Software A K 3015 ? 10 'BINDING SITE FOR RESIDUE K A 3015' AC4 Software A K 3016 ? 10 'BINDING SITE FOR RESIDUE K A 3016' AC5 Software A K 3017 ? 7 'BINDING SITE FOR RESIDUE K A 3017' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DG A 1 ? DG A 1001 . ? 1_555 ? 2 AC1 7 DG A 12 ? DG A 1012 . ? 1_555 ? 3 AC1 7 K C . ? K A 3014 . ? 1_555 ? 4 AC1 7 DG B 4 ? DG B 2004 . ? 1_555 ? 5 AC1 7 BRU B 5 ? BRU B 2005 . ? 1_555 ? 6 AC1 7 DT B 7 ? DT B 2007 . ? 1_555 ? 7 AC1 7 DG B 9 ? DG B 2009 . ? 1_555 ? 8 AC2 10 DG A 1 ? DG A 1001 . ? 1_555 ? 9 AC2 10 DG A 2 ? DG A 1002 . ? 1_555 ? 10 AC2 10 DG A 11 ? DG A 1011 . ? 1_555 ? 11 AC2 10 DG A 12 ? DG A 1012 . ? 1_555 ? 12 AC2 10 K D . ? K A 3015 . ? 1_555 ? 13 AC2 10 DG B 3 ? DG B 2003 . ? 1_555 ? 14 AC2 10 DG B 4 ? DG B 2004 . ? 1_555 ? 15 AC2 10 DG B 9 ? DG B 2009 . ? 1_555 ? 16 AC2 10 DG B 10 ? DG B 2010 . ? 1_555 ? 17 AC2 10 K G . ? K B 3013 . ? 1_555 ? 18 AC3 10 DG A 2 ? DG A 1002 . ? 1_555 ? 19 AC3 10 DG A 3 ? DG A 1003 . ? 1_555 ? 20 AC3 10 DG A 10 ? DG A 1010 . ? 1_555 ? 21 AC3 10 DG A 11 ? DG A 1011 . ? 1_555 ? 22 AC3 10 K C . ? K A 3014 . ? 1_555 ? 23 AC3 10 K E . ? K A 3016 . ? 1_555 ? 24 AC3 10 DG B 2 ? DG B 2002 . ? 1_555 ? 25 AC3 10 DG B 3 ? DG B 2003 . ? 1_555 ? 26 AC3 10 DG B 10 ? DG B 2010 . ? 1_555 ? 27 AC3 10 DG B 11 ? DG B 2011 . ? 1_555 ? 28 AC4 10 DG A 3 ? DG A 1003 . ? 1_555 ? 29 AC4 10 DG A 4 ? DG A 1004 . ? 1_555 ? 30 AC4 10 DG A 9 ? DG A 1009 . ? 1_555 ? 31 AC4 10 DG A 10 ? DG A 1010 . ? 1_555 ? 32 AC4 10 K D . ? K A 3015 . ? 1_555 ? 33 AC4 10 K F . ? K A 3017 . ? 1_555 ? 34 AC4 10 DG B 1 ? DG B 2001 . ? 1_555 ? 35 AC4 10 DG B 2 ? DG B 2002 . ? 1_555 ? 36 AC4 10 DG B 11 ? DG B 2011 . ? 1_555 ? 37 AC4 10 DG B 12 ? DG B 2012 . ? 1_555 ? 38 AC5 7 DG A 4 ? DG A 1004 . ? 1_555 ? 39 AC5 7 BRU A 5 ? BRU A 1005 . ? 1_555 ? 40 AC5 7 DT A 7 ? DT A 1007 . ? 1_555 ? 41 AC5 7 DG A 9 ? DG A 1009 . ? 1_555 ? 42 AC5 7 K E . ? K A 3016 . ? 1_555 ? 43 AC5 7 DG B 1 ? DG B 2001 . ? 1_555 ? 44 AC5 7 DG B 12 ? DG B 2012 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 BR _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 BRU _pdbx_validate_symm_contact.auth_seq_id_1 2005 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 7079 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_675 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1006 ? ? "C1'" A DT 1006 ? ? N1 A DT 1006 ? ? 102.10 108.00 -5.90 0.70 N 2 1 "O4'" A DT 1007 ? ? "C1'" A DT 1007 ? ? N1 A DT 1007 ? ? 102.53 108.00 -5.47 0.70 N 3 1 N3 A DT 1007 ? ? C2 A DT 1007 ? ? O2 A DT 1007 ? ? 126.02 122.30 3.72 0.60 N 4 1 "C3'" A DT 1007 ? ? "O3'" A DT 1007 ? ? P A DT 1008 ? ? 128.72 119.70 9.02 1.20 Y 5 1 N1 B DG 2002 ? ? C6 B DG 2002 ? ? O6 B DG 2002 ? ? 124.36 119.90 4.46 0.60 N 6 1 C5 B DG 2002 ? ? C6 B DG 2002 ? ? O6 B DG 2002 ? ? 123.74 128.60 -4.86 0.60 N 7 1 "O4'" B DG 2004 ? ? "C1'" B DG 2004 ? ? N9 B DG 2004 ? ? 110.30 108.30 2.00 0.30 N 8 1 "O4'" B DT 2007 ? ? "C1'" B DT 2007 ? ? N1 B DT 2007 ? ? 102.72 108.00 -5.28 0.70 N 9 1 "O4'" B DT 2008 ? ? "C1'" B DT 2008 ? ? N1 B DT 2008 ? ? 102.44 108.00 -5.56 0.70 N 10 1 "O4'" B DG 2010 ? ? "C1'" B DG 2010 ? ? N9 B DG 2010 ? ? 110.94 108.30 2.64 0.30 N 11 1 N1 B DG 2011 ? ? C6 B DG 2011 ? ? O6 B DG 2011 ? ? 125.86 119.90 5.96 0.60 N 12 1 C5 B DG 2011 ? ? C6 B DG 2011 ? ? O6 B DG 2011 ? ? 122.92 128.60 -5.68 0.60 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 5 A BRU 1005 ? DU ? 2 B BRU 5 B BRU 2005 ? DU ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 7123 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DG OP3 O N N 34 DG P P N N 35 DG OP1 O N N 36 DG OP2 O N N 37 DG "O5'" O N N 38 DG "C5'" C N N 39 DG "C4'" C N R 40 DG "O4'" O N N 41 DG "C3'" C N S 42 DG "O3'" O N N 43 DG "C2'" C N N 44 DG "C1'" C N R 45 DG N9 N Y N 46 DG C8 C Y N 47 DG N7 N Y N 48 DG C5 C Y N 49 DG C6 C N N 50 DG O6 O N N 51 DG N1 N N N 52 DG C2 C N N 53 DG N2 N N N 54 DG N3 N N N 55 DG C4 C Y N 56 DG HOP3 H N N 57 DG HOP2 H N N 58 DG "H5'" H N N 59 DG "H5''" H N N 60 DG "H4'" H N N 61 DG "H3'" H N N 62 DG "HO3'" H N N 63 DG "H2'" H N N 64 DG "H2''" H N N 65 DG "H1'" H N N 66 DG H8 H N N 67 DG H1 H N N 68 DG H21 H N N 69 DG H22 H N N 70 DT OP3 O N N 71 DT P P N N 72 DT OP1 O N N 73 DT OP2 O N N 74 DT "O5'" O N N 75 DT "C5'" C N N 76 DT "C4'" C N R 77 DT "O4'" O N N 78 DT "C3'" C N S 79 DT "O3'" O N N 80 DT "C2'" C N N 81 DT "C1'" C N R 82 DT N1 N N N 83 DT C2 C N N 84 DT O2 O N N 85 DT N3 N N N 86 DT C4 C N N 87 DT O4 O N N 88 DT C5 C N N 89 DT C7 C N N 90 DT C6 C N N 91 DT HOP3 H N N 92 DT HOP2 H N N 93 DT "H5'" H N N 94 DT "H5''" H N N 95 DT "H4'" H N N 96 DT "H3'" H N N 97 DT "HO3'" H N N 98 DT "H2'" H N N 99 DT "H2''" H N N 100 DT "H1'" H N N 101 DT H3 H N N 102 DT H71 H N N 103 DT H72 H N N 104 DT H73 H N N 105 DT H6 H N N 106 HOH O O N N 107 HOH H1 H N N 108 HOH H2 H N N 109 K K K N N 110 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DG OP3 P sing N N 35 DG OP3 HOP3 sing N N 36 DG P OP1 doub N N 37 DG P OP2 sing N N 38 DG P "O5'" sing N N 39 DG OP2 HOP2 sing N N 40 DG "O5'" "C5'" sing N N 41 DG "C5'" "C4'" sing N N 42 DG "C5'" "H5'" sing N N 43 DG "C5'" "H5''" sing N N 44 DG "C4'" "O4'" sing N N 45 DG "C4'" "C3'" sing N N 46 DG "C4'" "H4'" sing N N 47 DG "O4'" "C1'" sing N N 48 DG "C3'" "O3'" sing N N 49 DG "C3'" "C2'" sing N N 50 DG "C3'" "H3'" sing N N 51 DG "O3'" "HO3'" sing N N 52 DG "C2'" "C1'" sing N N 53 DG "C2'" "H2'" sing N N 54 DG "C2'" "H2''" sing N N 55 DG "C1'" N9 sing N N 56 DG "C1'" "H1'" sing N N 57 DG N9 C8 sing Y N 58 DG N9 C4 sing Y N 59 DG C8 N7 doub Y N 60 DG C8 H8 sing N N 61 DG N7 C5 sing Y N 62 DG C5 C6 sing N N 63 DG C5 C4 doub Y N 64 DG C6 O6 doub N N 65 DG C6 N1 sing N N 66 DG N1 C2 sing N N 67 DG N1 H1 sing N N 68 DG C2 N2 sing N N 69 DG C2 N3 doub N N 70 DG N2 H21 sing N N 71 DG N2 H22 sing N N 72 DG N3 C4 sing N N 73 DT OP3 P sing N N 74 DT OP3 HOP3 sing N N 75 DT P OP1 doub N N 76 DT P OP2 sing N N 77 DT P "O5'" sing N N 78 DT OP2 HOP2 sing N N 79 DT "O5'" "C5'" sing N N 80 DT "C5'" "C4'" sing N N 81 DT "C5'" "H5'" sing N N 82 DT "C5'" "H5''" sing N N 83 DT "C4'" "O4'" sing N N 84 DT "C4'" "C3'" sing N N 85 DT "C4'" "H4'" sing N N 86 DT "O4'" "C1'" sing N N 87 DT "C3'" "O3'" sing N N 88 DT "C3'" "C2'" sing N N 89 DT "C3'" "H3'" sing N N 90 DT "O3'" "HO3'" sing N N 91 DT "C2'" "C1'" sing N N 92 DT "C2'" "H2'" sing N N 93 DT "C2'" "H2''" sing N N 94 DT "C1'" N1 sing N N 95 DT "C1'" "H1'" sing N N 96 DT N1 C2 sing N N 97 DT N1 C6 sing N N 98 DT C2 O2 doub N N 99 DT C2 N3 sing N N 100 DT N3 C4 sing N N 101 DT N3 H3 sing N N 102 DT C4 O4 doub N N 103 DT C4 C5 sing N N 104 DT C5 C7 sing N N 105 DT C5 C6 doub N N 106 DT C7 H71 sing N N 107 DT C7 H72 sing N N 108 DT C7 H73 sing N N 109 DT C6 H6 sing N N 110 HOH O H1 sing N N 111 HOH O H2 sing N N 112 # _ndb_struct_conf_na.entry_id 1JPQ _ndb_struct_conf_na.feature 'quadruple helix' # _atom_sites.entry_id 1JPQ _atom_sites.fract_transf_matrix[1][1] 0.036307 _atom_sites.fract_transf_matrix[1][2] 0.020962 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.041924 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006858 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C K N O P # loop_