HEADER HYDROLASE 08-AUG-01 1JQU TITLE ARE CARBOXY TERMINII OF HELICES CODED BY THE LOCAL SEQUENCE OR BY TITLE 2 TERTIARY STRUCTURE CONTACTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: LYSIS PROTEIN; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 GENE: E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RR1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHS1403 KEYWDS GLYCINE HELIX TERMINII, SCHELLMAN MOTIF, ALPHA-L MOTIF, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SAGERMANN,L.-G.MARTENSSON,W.A.BAASE,B.W.MATTHEWS REVDAT 7 16-AUG-23 1JQU 1 REMARK REVDAT 6 27-OCT-21 1JQU 1 SEQADV REVDAT 5 24-JUL-19 1JQU 1 REMARK REVDAT 4 04-OCT-17 1JQU 1 REMARK REVDAT 3 26-MAR-14 1JQU 1 REMARK VERSN REVDAT 2 24-FEB-09 1JQU 1 VERSN REVDAT 1 06-MAR-02 1JQU 0 JRNL AUTH M.SAGERMANN,L.-G.MARTENSSON,W.A.BAASE,B.W.MATTHEWS JRNL TITL A TEST OF PROPOSED RULES FOR HELIX CAPPING: IMPLICATIONS FOR JRNL TITL 2 PROTEIN DESIGN JRNL REF PROTEIN SCI. V. 11 516 2002 JRNL REFN ISSN 0961-8368 JRNL PMID 11847274 JRNL DOI 10.1110/PS.39802 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.AURORA,R.SRINIVASAN,G.D.ROSE REMARK 1 TITL RULES FOR ALPHA-HELIX TERMINATION BY GLYCINE. REMARK 1 REF SCIENCE V. 264 1126 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 8178170 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.SCHELLMAN REMARK 1 TITL THE ALPHA-L CONFORMATIONS AT THE ENDS OF HELICES REMARK 1 REF PROTEIN FOLDING 53 1980 REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH L.H.WEAVER,B.W.MATTHEWS REMARK 1 TITL STRUCTURE OF BACTERIOPHAGE T4 LYSOZYME REFINED AT 1.7 A REMARK 1 TITL 2 RESOLUTION. REMARK 1 REF J.MOL.BIOL. V. 193 189 1987 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 3586019 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 20506 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1616 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2410 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 20506 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 36.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.024 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.370 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : ANISOTROPIC REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLECULAR REPLACEMENT (DIRECT ROTATION REMARK 3 SEARCHES) WAS CARRIED OUT WITH LYSOZYME SEARCH MOLECULES WITH REMARK 3 DIFFERENT HINGE BENDING-ANGLES. THE STARTING MODEL WAS SUBJECTED REMARK 3 TO SEVERAL ROUNDS OF CNS SA-REFINEMENT AND SUBSEQUENTLY REFINED REMARK 3 WITH TNT. POSITVE DENSITY WAS OBSERVED AROUND CRYSTAL CONTACT REMARK 3 SITES. THESE FEATURES, PRESUMABLY PEG MOLECULES, COULD NOT BE REMARK 3 MODELED UNAMBIGOUSLY AND WERE THEREFORE OMITTED FROM THE FINAL REMARK 3 MODEL. REMARK 4 REMARK 4 1JQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-95 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XUONG-HAMLIN MULTIWIRE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HAMLIN REMARK 200 DATA SCALING SOFTWARE : HAMLIN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22095 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 34.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.0 REMARK 200 DATA REDUNDANCY : 3.420 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25700 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS, TNT REMARK 200 STARTING MODEL: T4 LYSOZYME 2LZM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, PIPES BUFFER PH7.0, 0.2M REMARK 280 LISO4, PH 6.75, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE D 50 N GLY D 51 1.50 REMARK 500 O TRP D 126 N ASP D 127 1.54 REMARK 500 C SER B 36 CD PRO B 37 1.56 REMARK 500 CZ ARG C 52 CG2 THR C 54 1.63 REMARK 500 NH1 ARG C 52 CG2 THR C 54 1.90 REMARK 500 NH2 ARG C 52 CG2 THR C 54 1.99 REMARK 500 O ARG D 52 N THR D 54 2.05 REMARK 500 O ARG C 8 O GLU C 11 2.07 REMARK 500 O PHE C 114 CD1 LEU C 118 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN C 2 CB ASN C 2 CG 0.194 REMARK 500 PHE C 4 CA PHE C 4 CB 0.145 REMARK 500 PHE C 4 CB PHE C 4 CG -0.399 REMARK 500 GLU C 5 CB GLU C 5 CG 0.131 REMARK 500 GLU C 11 CB GLU C 11 CG -0.128 REMARK 500 HIS C 31 CB HIS C 31 CG 0.210 REMARK 500 LEU C 32 CB LEU C 32 CG 0.233 REMARK 500 THR C 34 CB THR C 34 OG1 0.168 REMARK 500 THR C 34 CB THR C 34 CG2 0.357 REMARK 500 PHE C 114 CB PHE C 114 CG -0.200 REMARK 500 LYS D 48 C ALA D 49 N 0.183 REMARK 500 ILE D 50 CB ILE D 50 CG1 0.497 REMARK 500 ILE D 50 CB ILE D 50 CG2 0.207 REMARK 500 ILE D 50 C GLY D 51 N -0.302 REMARK 500 LYS D 124 CB LYS D 124 CG 0.385 REMARK 500 ARG D 125 CB ARG D 125 CG 0.325 REMARK 500 TRP D 126 CB TRP D 126 CG -0.166 REMARK 500 TRP D 126 C ASP D 127 N -0.159 REMARK 500 ASP D 127 N ASP D 127 CA 0.121 REMARK 500 ASP D 127 CB ASP D 127 CG 0.449 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 143 C - N - CD ANGL. DEV. = -23.9 DEGREES REMARK 500 PRO B 37 C - N - CD ANGL. DEV. = -61.1 DEGREES REMARK 500 MET C 1 CA - C - N ANGL. DEV. = 13.5 DEGREES REMARK 500 MET C 1 O - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 ASN C 2 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 ASN C 2 CA - CB - CG ANGL. DEV. = -18.5 DEGREES REMARK 500 PHE C 4 CB - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 PHE C 4 CB - CG - CD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 LEU C 32 CA - CB - CG ANGL. DEV. = -21.2 DEGREES REMARK 500 LEU C 32 CB - CG - CD1 ANGL. DEV. = 19.9 DEGREES REMARK 500 THR C 34 OG1 - CB - CG2 ANGL. DEV. = -22.0 DEGREES REMARK 500 THR C 34 CA - CB - CG2 ANGL. DEV. = -18.2 DEGREES REMARK 500 THR C 34 O - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 PHE C 114 CA - CB - CG ANGL. DEV. = 30.4 DEGREES REMARK 500 PHE C 114 CB - CG - CD2 ANGL. DEV. = -14.0 DEGREES REMARK 500 PHE C 114 CB - CG - CD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 THR C 115 CA - CB - CG2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ILE D 50 CG1 - CB - CG2 ANGL. DEV. = -26.7 DEGREES REMARK 500 ILE D 50 CA - CB - CG1 ANGL. DEV. = -17.2 DEGREES REMARK 500 ILE D 50 CA - C - N ANGL. DEV. = 33.4 DEGREES REMARK 500 ILE D 50 O - C - N ANGL. DEV. = -41.1 DEGREES REMARK 500 GLY D 51 C - N - CA ANGL. DEV. = 40.4 DEGREES REMARK 500 ARG D 52 O - C - N ANGL. DEV. = -18.0 DEGREES REMARK 500 LYS D 124 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 LYS D 124 O - C - N ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG D 125 CA - CB - CG ANGL. DEV. = -26.0 DEGREES REMARK 500 ARG D 125 O - C - N ANGL. DEV. = 11.7 DEGREES REMARK 500 TRP D 126 CB - CA - C ANGL. DEV. = -26.2 DEGREES REMARK 500 TRP D 126 N - CA - CB ANGL. DEV. = 25.7 DEGREES REMARK 500 TRP D 126 CB - CG - CD2 ANGL. DEV. = -9.2 DEGREES REMARK 500 TRP D 126 CA - C - N ANGL. DEV. = 27.3 DEGREES REMARK 500 TRP D 126 O - C - N ANGL. DEV. = -42.9 DEGREES REMARK 500 ASP D 127 C - N - CA ANGL. DEV. = 28.9 DEGREES REMARK 500 ASP D 127 CA - CB - CG ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 -79.19 -82.86 REMARK 500 ASP A 20 -167.03 -71.64 REMARK 500 PRO A 37 -6.91 -59.14 REMARK 500 ARG A 52 129.40 178.03 REMARK 500 ASN A 53 83.75 -52.42 REMARK 500 ARG A 80 30.06 -94.22 REMARK 500 PHE A 114 58.68 -65.43 REMARK 500 ARG A 125 57.94 -90.84 REMARK 500 TRP A 126 -77.17 -45.75 REMARK 500 LEU A 158 36.14 -95.48 REMARK 500 GLU B 22 4.78 -58.67 REMARK 500 TYR B 25 79.08 -103.76 REMARK 500 ILE B 29 77.70 -104.56 REMARK 500 LEU B 33 -75.97 -75.09 REMARK 500 LYS B 35 79.27 -105.90 REMARK 500 SER B 36 11.52 -141.78 REMARK 500 PRO B 37 12.32 58.46 REMARK 500 LEU B 46 -75.86 -70.04 REMARK 500 ARG B 52 156.69 174.68 REMARK 500 ILE B 78 -70.60 -52.91 REMARK 500 ASN B 116 -61.62 -106.97 REMARK 500 LEU B 118 -71.67 -50.83 REMARK 500 ARG B 125 69.13 -106.14 REMARK 500 SER B 136 -163.24 -47.92 REMARK 500 ASN B 163 91.99 52.79 REMARK 500 ASN C 2 -26.40 -33.57 REMARK 500 TYR C 18 145.79 -173.64 REMARK 500 THR C 21 20.00 -50.58 REMARK 500 GLU C 22 9.82 -156.05 REMARK 500 ILE C 27 143.79 -171.68 REMARK 500 LEU C 33 -69.43 -101.45 REMARK 500 ARG C 52 142.96 175.52 REMARK 500 ASN C 53 84.52 -66.23 REMARK 500 LYS C 60 -8.92 -53.09 REMARK 500 GLN C 69 -74.86 -54.21 REMARK 500 ARG C 80 33.87 -91.07 REMARK 500 LYS C 85 -55.48 -24.01 REMARK 500 SER C 90 2.27 -68.15 REMARK 500 PHE C 114 73.99 -110.86 REMARK 500 LYS C 124 15.50 57.16 REMARK 500 THR C 142 69.78 -116.98 REMARK 500 ASN C 163 -45.79 -2.43 REMARK 500 ASP D 20 -172.12 -62.58 REMARK 500 THR D 34 148.33 -172.06 REMARK 500 PRO D 37 99.03 -65.28 REMARK 500 SER D 38 130.50 -179.85 REMARK 500 LYS D 83 54.23 -110.55 REMARK 500 LEU D 84 -54.93 -145.46 REMARK 500 TYR D 88 -62.76 -28.96 REMARK 500 THR D 115 -63.47 -93.78 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET C 1 ASN C 2 -140.39 REMARK 500 ILE D 50 GLY D 51 93.59 REMARK 500 TRP D 126 ASP D 127 132.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE C 114 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET C 1 -11.60 REMARK 500 ASN C 2 -10.08 REMARK 500 GLY C 30 -10.56 REMARK 500 LEU C 33 15.82 REMARK 500 THR C 34 -19.20 REMARK 500 ILE D 50 23.15 REMARK 500 ARG D 52 16.88 REMARK 500 TRP D 126 18.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JOZ RELATED DB: PDB REMARK 900 T4 LYSOZYME WITH MUTATION T157I AT THE CARBOXY TERMINAL END OF REMARK 900 HELIX J DBREF 1JQU A 1 164 UNP P00720 LYS_BPT4 1 164 DBREF 1JQU B 1 164 UNP P00720 LYS_BPT4 1 164 DBREF 1JQU C 1 164 UNP P00720 LYS_BPT4 1 164 DBREF 1JQU D 1 164 UNP P00720 LYS_BPT4 1 164 SEQADV 1JQU THR A 54 UNP P00720 CIS 54 ENGINEERED MUTATION SEQADV 1JQU ALA A 97 UNP P00720 CIS 97 ENGINEERED MUTATION SEQADV 1JQU LEU A 158 UNP P00720 TRP 158 ENGINEERED MUTATION SEQADV 1JQU THR B 54 UNP P00720 CIS 54 ENGINEERED MUTATION SEQADV 1JQU ALA B 97 UNP P00720 CIS 97 ENGINEERED MUTATION SEQADV 1JQU LEU B 158 UNP P00720 TRP 158 ENGINEERED MUTATION SEQADV 1JQU THR C 54 UNP P00720 CIS 54 ENGINEERED MUTATION SEQADV 1JQU ALA C 97 UNP P00720 CIS 97 ENGINEERED MUTATION SEQADV 1JQU LEU C 158 UNP P00720 TRP 158 ENGINEERED MUTATION SEQADV 1JQU THR D 54 UNP P00720 CIS 54 ENGINEERED MUTATION SEQADV 1JQU ALA D 97 UNP P00720 CIS 97 ENGINEERED MUTATION SEQADV 1JQU LEU D 158 UNP P00720 TRP 158 ENGINEERED MUTATION SEQRES 1 A 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 A 164 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 A 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 A 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 A 164 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 A 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 A 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 A 164 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE SEQRES 9 A 164 GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 A 164 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 A 164 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 A 164 ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 A 164 THR LEU ASP ALA TYR LYS ASN LEU SEQRES 1 B 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 B 164 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 B 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 B 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 B 164 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 B 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 B 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 B 164 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE SEQRES 9 B 164 GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 B 164 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 B 164 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 B 164 ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 B 164 THR LEU ASP ALA TYR LYS ASN LEU SEQRES 1 C 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 C 164 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 C 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 C 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 C 164 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 C 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 C 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 C 164 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE SEQRES 9 C 164 GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 C 164 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 C 164 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 C 164 ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 C 164 THR LEU ASP ALA TYR LYS ASN LEU SEQRES 1 D 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 D 164 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 D 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 D 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 D 164 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 D 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 D 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 D 164 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE SEQRES 9 D 164 GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 D 164 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 D 164 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 D 164 ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 D 164 THR LEU ASP ALA TYR LYS ASN LEU FORMUL 5 HOH *29(H2 O) HELIX 1 1 ASN A 2 GLY A 12 1 11 HELIX 2 2 LEU A 39 GLY A 51 1 13 HELIX 3 3 THR A 59 ARG A 80 1 22 HELIX 4 4 LEU A 84 LEU A 91 1 8 HELIX 5 5 ASP A 92 MET A 106 1 15 HELIX 6 6 GLY A 107 ALA A 112 1 6 HELIX 7 7 PHE A 114 GLN A 123 1 10 HELIX 8 8 ARG A 125 LYS A 135 1 11 HELIX 9 9 SER A 136 THR A 142 1 7 HELIX 10 10 THR A 142 GLY A 156 1 15 HELIX 11 11 LEU A 158 LYS A 162 5 5 HELIX 12 12 ASN B 2 GLU B 11 1 10 HELIX 13 13 ASN B 40 ILE B 50 1 11 HELIX 14 14 THR B 59 ARG B 80 1 22 HELIX 15 15 LYS B 83 LEU B 91 1 9 HELIX 16 16 ASP B 92 GLY B 107 1 16 HELIX 17 17 GLY B 107 PHE B 114 1 8 HELIX 18 18 ASN B 116 GLN B 122 1 7 HELIX 19 19 ARG B 125 LEU B 133 1 9 HELIX 20 20 ARG B 137 THR B 142 1 6 HELIX 21 21 THR B 142 GLY B 156 1 15 HELIX 22 22 ASN C 2 GLU C 11 1 10 HELIX 23 23 SER C 38 GLY C 51 1 14 HELIX 24 24 ASP C 61 ARG C 80 1 20 HELIX 25 25 LYS C 83 SER C 90 1 8 HELIX 26 26 ASP C 92 GLY C 113 1 22 HELIX 27 27 ASN C 116 GLN C 123 1 8 HELIX 28 28 ARG C 125 LYS C 135 1 11 HELIX 29 29 SER C 136 SER C 136 5 1 HELIX 30 30 ARG C 137 GLN C 141 5 5 HELIX 31 31 THR C 142 GLY C 156 1 15 HELIX 32 32 LEU C 158 LYS C 162 5 5 HELIX 33 33 ASN D 2 GLU D 11 1 10 HELIX 34 34 SER D 38 GLY D 51 1 14 HELIX 35 35 THR D 59 ASN D 81 1 23 HELIX 36 36 LEU D 84 LEU D 91 1 8 HELIX 37 37 ARG D 95 GLY D 113 1 19 HELIX 38 38 THR D 115 GLN D 123 1 9 HELIX 39 39 ASP D 127 LYS D 135 1 9 HELIX 40 40 THR D 142 GLY D 156 1 15 HELIX 41 41 LEU D 158 LYS D 162 5 5 SHEET 1 A 3 ARG A 14 LYS A 19 0 SHEET 2 A 3 TYR A 25 GLY A 28 -1 O GLY A 28 N ARG A 14 SHEET 3 A 3 HIS A 31 THR A 34 -1 O HIS A 31 N ILE A 27 SHEET 1 B 2 TYR B 25 ILE B 27 0 SHEET 2 B 2 HIS B 31 THR B 34 -1 O HIS B 31 N ILE B 27 SHEET 1 C 3 LEU C 13 LYS C 19 0 SHEET 2 C 3 TYR C 25 ILE C 29 -1 O THR C 26 N TYR C 18 SHEET 3 C 3 HIS C 31 THR C 34 -1 O LEU C 33 N TYR C 25 SHEET 1 D 3 TYR D 18 LYS D 19 0 SHEET 2 D 3 TYR D 25 ILE D 27 -1 O THR D 26 N TYR D 18 SHEET 3 D 3 HIS D 31 THR D 34 -1 O LEU D 33 N TYR D 25 CRYST1 74.300 77.200 138.200 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013459 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007236 0.00000