HEADER SIGNALING PROTEIN, MEMBRANE PROTEIN 13-AUG-01 1JRF TITLE NMR SOLUTION STRUCTURE OF THE VIRAL RECEPTOR DOMAIN OF TVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBGROUP A ROUS SARCOMA VIRUS RECEPTORS PG800 AND PG950; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LDL-A DOMAIN; COMPND 5 SYNONYM: TVA LDL-A MODULE; LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COTURNIX JAPONICA; SOURCE 3 ORGANISM_COMMON: JAPANESE QUAIL; SOURCE 4 ORGANISM_TAXID: 93934; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS DISULFIDE BOND, ALPHA HELIX, CALCIUM CAGE, SIGNALING PROTEIN, KEYWDS 2 MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Q.-Y.WANG,W.HUANG,K.DOLMER,P.G.W.GETTINS,L.RONG REVDAT 4 23-FEB-22 1JRF 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1JRF 1 VERSN REVDAT 2 01-APR-03 1JRF 1 JRNL REVDAT 1 08-MAR-02 1JRF 0 JRNL AUTH Q.Y.WANG,W.HUANG,K.DOLMER,P.G.GETTINS,L.RONG JRNL TITL SOLUTION STRUCTURE OF THE VIRAL RECEPTOR DOMAIN OF TVA AND JRNL TITL 2 ITS IMPLICATIONS IN VIRAL ENTRY. JRNL REF J.VIROL. V. 76 2848 2002 JRNL REFN ISSN 0022-538X JRNL PMID 11861852 JRNL DOI 10.1128/JVI.76.6.2848-2856.2002 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA 1.4, DIANA 1.4 REMARK 3 AUTHORS : GUNTERT, P. (DIANA), GUNTERT, P. (DIANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JRF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014103. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 282 REMARK 210 PH : 5.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM TVA LDL-A MODULE U-15N 13C; REMARK 210 20MM CH3COOH, 10MM CACL2, AND 10% REMARK 210 D2O, PH 5.3; 2MM TVA LDL-A REMARK 210 MODULE U-15N; 20MM CD3COOD, 10MM REMARK 210 CACL2, AND 99% D2O, PH 5.3; 2MM REMARK 210 TVA LDL-A MODULE 14N; 20MM REMARK 210 CH3COOH, 10MM CACL2, AND 99% D2O, REMARK 210 PH 5.3; 2MM TVA LDL-A MODULE U- REMARK 210 15N, 13C; 20MM CD3COOD, 10MM REMARK 210 CACL2, AND 99% D2O, PH 5.3; 2MM REMARK 210 TVA LDL-A MODULE U-15N; 20MM REMARK 210 CH3COOH, 10MM CACL2, AND 10% D2O, REMARK 210 PH 5.3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA, HNCACB; 15N-TOCSY; 1H-15N REMARK 210 HSQC; 2D NOESY; HCCH-NOESY; REMARK 210 NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 41 CA CA A 48 0.63 REMARK 500 H GLY A 31 OE1 GLU A 41 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 154.61 -41.21 REMARK 500 1 CYS A 5 73.16 179.49 REMARK 500 1 PHE A 10 -158.21 -65.11 REMARK 500 1 CYS A 12 56.62 74.85 REMARK 500 1 SER A 13 10.27 -146.35 REMARK 500 1 GLU A 14 109.55 174.10 REMARK 500 1 HIS A 19 85.33 179.07 REMARK 500 1 CYS A 22 -78.19 -129.57 REMARK 500 1 CYS A 29 80.59 39.38 REMARK 500 1 ASP A 30 -51.67 -137.88 REMARK 500 1 ASP A 34 38.24 -146.16 REMARK 500 1 TRP A 42 -77.08 -51.42 REMARK 500 1 CYS A 44 -47.99 -147.48 REMARK 500 2 SER A 3 90.87 44.36 REMARK 500 2 CYS A 5 74.86 178.84 REMARK 500 2 PHE A 10 -158.86 -71.56 REMARK 500 2 CYS A 12 56.83 75.82 REMARK 500 2 GLU A 14 108.41 175.06 REMARK 500 2 HIS A 19 84.42 179.26 REMARK 500 2 CYS A 22 -74.43 -136.75 REMARK 500 2 CYS A 29 78.51 49.22 REMARK 500 2 ASP A 30 -62.00 -139.64 REMARK 500 2 ASP A 34 35.24 -142.49 REMARK 500 2 ASP A 37 -55.04 -122.16 REMARK 500 2 GLU A 41 31.39 -147.79 REMARK 500 2 TRP A 42 -86.34 -51.17 REMARK 500 3 SER A 2 126.42 -178.08 REMARK 500 3 SER A 3 74.81 59.24 REMARK 500 3 CYS A 5 73.83 179.18 REMARK 500 3 PHE A 10 -156.16 -61.00 REMARK 500 3 CYS A 12 49.88 76.25 REMARK 500 3 GLU A 14 113.81 176.43 REMARK 500 3 HIS A 19 84.69 178.85 REMARK 500 3 CYS A 22 -73.28 -142.74 REMARK 500 3 CYS A 29 78.60 47.04 REMARK 500 3 ASP A 30 -62.52 -139.91 REMARK 500 3 CYS A 35 -161.49 -122.29 REMARK 500 3 ASP A 37 -56.20 -132.33 REMARK 500 3 TRP A 42 -89.15 -52.30 REMARK 500 4 SER A 2 -46.30 -147.95 REMARK 500 4 SER A 3 -67.85 -131.87 REMARK 500 4 CYS A 5 75.26 178.93 REMARK 500 4 PHE A 10 -156.47 -63.53 REMARK 500 4 CYS A 12 51.28 75.38 REMARK 500 4 GLU A 14 113.43 176.24 REMARK 500 4 HIS A 19 86.38 178.68 REMARK 500 4 CYS A 22 -74.34 -144.01 REMARK 500 4 CYS A 29 75.76 49.50 REMARK 500 4 ASP A 30 -62.42 -137.49 REMARK 500 4 CYS A 35 -168.25 -116.48 REMARK 500 REMARK 500 THIS ENTRY HAS 279 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 48 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 27 O REMARK 620 2 ASP A 30 OD2 76.4 REMARK 620 3 HIS A 32 O 162.2 85.9 REMARK 620 4 ASP A 34 OD2 96.0 106.8 87.2 REMARK 620 5 ASP A 40 OD2 94.3 170.0 103.4 77.6 REMARK 620 6 GLU A 41 OE1 100.8 74.9 76.1 163.0 103.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 48 DBREF 1JRF A 1 47 UNP P98162 RSVR_COTJA 26 72 SEQADV 1JRF GLY A 1 UNP P98162 SER 26 CLONING ARTIFACT SEQADV 1JRF SER A 2 UNP P98162 LEU 27 CLONING ARTIFACT SEQRES 1 A 47 GLY SER SER ARG CYS PRO PRO GLY GLN PHE ARG CYS SER SEQRES 2 A 47 GLU PRO PRO GLY ALA HIS GLY GLU CYS TYR PRO GLN ASP SEQRES 3 A 47 TRP LEU CYS ASP GLY HIS PRO ASP CYS ASP ASP GLY ARG SEQRES 4 A 47 ASP GLU TRP GLY CYS GLY THR SER HET CA A 48 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 1 TYR A 23 LEU A 28 5 6 HELIX 2 2 GLU A 41 THR A 46 1 6 SSBOND 1 CYS A 5 CYS A 22 1555 1555 2.07 SSBOND 2 CYS A 12 CYS A 35 1555 1555 1.98 SSBOND 3 CYS A 29 CYS A 44 1555 1555 1.99 LINK O TRP A 27 CA CA A 48 1555 1555 2.50 LINK OD2 ASP A 30 CA CA A 48 1555 1555 2.31 LINK O HIS A 32 CA CA A 48 1555 1555 2.18 LINK OD2 ASP A 34 CA CA A 48 1555 1555 2.64 LINK OD2 ASP A 40 CA CA A 48 1555 1555 3.02 LINK OE1 GLU A 41 CA CA A 48 1555 1555 2.60 SITE 1 AC1 6 TRP A 27 ASP A 30 HIS A 32 ASP A 34 SITE 2 AC1 6 ASP A 40 GLU A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1