HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-AUG-01 1JRK TITLE CRYSTAL STRUCTURE OF A NUDIX PROTEIN FROM PYROBACULUM AEROPHILUM TITLE 2 REVEALS A DIMER WITH INTERTWINED BETA SHEETS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUDIX HOMOLOG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 13773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-22B(+); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-22B_MUTT KEYWDS NUDIX/MUTT-LIKE FOLD, MIXED ALPHA/BETA, TETRAMERIZATION DUE TO HIX6X KEYWDS 2 TAG, PUTATIVE NUDIX HYDROLASE, STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.WANG,C.MURA,M.R.SAWAYA,D.CASCIO,D.EISENBERG REVDAT 4 03-APR-24 1JRK 1 REMARK REVDAT 3 07-FEB-24 1JRK 1 REMARK REVDAT 2 24-FEB-09 1JRK 1 VERSN REVDAT 1 03-APR-02 1JRK 0 JRNL AUTH S.WANG,C.MURA,M.R.SAWAYA,D.CASCIO,D.EISENBERG JRNL TITL STRUCTURE OF A NUDIX PROTEIN FROM PYROBACULUM AEROPHILUM JRNL TITL 2 REVEALS A DIMER WITH TWO INTERSUBUNIT BETA-SHEETS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 571 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 11914479 JRNL DOI 10.1107/S0907444902001191 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 22891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4728 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.757 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.61 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.038 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED ISOTROPIC TEMPERATURE REMARK 3 FACTORS REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JRK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23707 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: P. AEROPHILUM MUTT DIMER SOLVED IN ANOTHER SPACE REMARK 200 GROUP (P21) BY WANG ET AL. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, MPD, MES BUFFER, PH 6.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.73200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE PUTATIVE BIOLOGICALLY-RELEVANT ASSEMBLY IS A DIMER, REMARK 300 AND TWO OF THESE ASSOCIATE TO FORM A WEAK TETRAMER IN THE REMARK 300 ASYMMETRIC UNIT. CHAINS A+B AND C+D FORM THE TWO DIMERS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 149 REMARK 465 GLU A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 ALA B 148 REMARK 465 LEU B 149 REMARK 465 GLU B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 465 HIS B 156 REMARK 465 LEU C 149 REMARK 465 GLU C 150 REMARK 465 HIS C 151 REMARK 465 HIS C 152 REMARK 465 HIS C 153 REMARK 465 HIS C 154 REMARK 465 HIS C 155 REMARK 465 HIS C 156 REMARK 465 HIS D 151 REMARK 465 HIS D 152 REMARK 465 HIS D 153 REMARK 465 HIS D 154 REMARK 465 HIS D 155 REMARK 465 HIS D 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU D 150 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 21 OE2 GLU A 86 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 64 126.86 -173.06 REMARK 500 PRO A 85 93.51 -63.04 REMARK 500 GLU A 86 15.88 158.61 REMARK 500 GLU A 87 -163.73 148.67 REMARK 500 THR A 88 103.32 178.54 REMARK 500 GLU A 120 99.15 -66.57 REMARK 500 GLU B 87 167.62 178.65 REMARK 500 LEU B 145 31.01 -65.10 REMARK 500 ASN C 35 -89.07 -66.86 REMARK 500 GLU C 36 146.20 -22.29 REMARK 500 ASP C 65 -162.59 -177.27 REMARK 500 GLU C 87 -168.65 167.32 REMARK 500 ASN C 124 -0.57 66.57 REMARK 500 ILE D 64 139.67 174.34 REMARK 500 GLU D 87 149.44 -179.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MUT RELATED DB: PDB REMARK 900 NMR STUDY OF MUTT ENZYME, A NUCLEOSIDE TRIPHOSPHATE REMARK 900 PYROPHOSPHOHYDROLASE REMARK 900 RELATED ID: 1TUM RELATED DB: PDB REMARK 900 MUTT PYROPHOSPHOHYDROLASE-METAL-NUCLEOTIDE-METAL COMPLEX, NMR, 16 REMARK 900 STRUCTURES REMARK 900 RELATED ID: 1K2E RELATED DB: PDB REMARK 900 1K2E CONTAINS THE SAME PROTEIN AS THIS ENTRY, AT 1.8A, SOLVED BY REMARK 900 MOLECULAR REPLACEMENT. REMARK 900 RELATED ID: 1K26 RELATED DB: PDB REMARK 900 1K26 CONTAINS THE SAME PROTEIN AS THIS ENTRY, SOLVED BY SAD ON REMARK 900 IRIDIUM DERIVATIVE DATA AT 1.85 A RESOLUTION. DBREF 1JRK A 2 142 UNP Q8ZTD8 Q8ZTD8_PYRAE 6 146 DBREF 1JRK B 2 142 UNP Q8ZTD8 Q8ZTD8_PYRAE 6 146 DBREF 1JRK C 2 142 UNP Q8ZTD8 Q8ZTD8_PYRAE 6 146 DBREF 1JRK D 2 142 UNP Q8ZTD8 Q8ZTD8_PYRAE 6 146 SEQRES 1 A 156 MET ILE VAL THR SER GLY VAL LEU VAL GLU ASN GLY LYS SEQRES 2 A 156 VAL LEU LEU VAL LYS HIS LYS ARG LEU GLY VAL TYR ILE SEQRES 3 A 156 TYR PRO GLY GLY HIS VAL GLU HIS ASN GLU THR PRO ILE SEQRES 4 A 156 GLU ALA VAL LYS ARG GLU PHE GLU GLU GLU THR GLY ILE SEQRES 5 A 156 VAL VAL GLU PRO ILE GLY PHE THR TYR GLY ILE ILE ASP SEQRES 6 A 156 GLU ASN ALA VAL GLU ARG PRO MET PRO LEU VAL ILE LEU SEQRES 7 A 156 GLU GLU VAL VAL LYS TYR PRO GLU GLU THR HIS ILE HIS SEQRES 8 A 156 PHE ASP LEU ILE TYR LEU VAL LYS ARG VAL GLY GLY ASP SEQRES 9 A 156 LEU LYS ASN GLY GLU TRP ILE ASP VAL ARG GLU ILE ASP SEQRES 10 A 156 ARG ILE GLU THR PHE PRO ASN VAL ARG LYS VAL VAL SER SEQRES 11 A 156 LEU ALA LEU SER THR LEU TYR ARG LEU GLY LYS ILE SER SEQRES 12 A 156 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 156 MET ILE VAL THR SER GLY VAL LEU VAL GLU ASN GLY LYS SEQRES 2 B 156 VAL LEU LEU VAL LYS HIS LYS ARG LEU GLY VAL TYR ILE SEQRES 3 B 156 TYR PRO GLY GLY HIS VAL GLU HIS ASN GLU THR PRO ILE SEQRES 4 B 156 GLU ALA VAL LYS ARG GLU PHE GLU GLU GLU THR GLY ILE SEQRES 5 B 156 VAL VAL GLU PRO ILE GLY PHE THR TYR GLY ILE ILE ASP SEQRES 6 B 156 GLU ASN ALA VAL GLU ARG PRO MET PRO LEU VAL ILE LEU SEQRES 7 B 156 GLU GLU VAL VAL LYS TYR PRO GLU GLU THR HIS ILE HIS SEQRES 8 B 156 PHE ASP LEU ILE TYR LEU VAL LYS ARG VAL GLY GLY ASP SEQRES 9 B 156 LEU LYS ASN GLY GLU TRP ILE ASP VAL ARG GLU ILE ASP SEQRES 10 B 156 ARG ILE GLU THR PHE PRO ASN VAL ARG LYS VAL VAL SER SEQRES 11 B 156 LEU ALA LEU SER THR LEU TYR ARG LEU GLY LYS ILE SER SEQRES 12 B 156 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 156 MET ILE VAL THR SER GLY VAL LEU VAL GLU ASN GLY LYS SEQRES 2 C 156 VAL LEU LEU VAL LYS HIS LYS ARG LEU GLY VAL TYR ILE SEQRES 3 C 156 TYR PRO GLY GLY HIS VAL GLU HIS ASN GLU THR PRO ILE SEQRES 4 C 156 GLU ALA VAL LYS ARG GLU PHE GLU GLU GLU THR GLY ILE SEQRES 5 C 156 VAL VAL GLU PRO ILE GLY PHE THR TYR GLY ILE ILE ASP SEQRES 6 C 156 GLU ASN ALA VAL GLU ARG PRO MET PRO LEU VAL ILE LEU SEQRES 7 C 156 GLU GLU VAL VAL LYS TYR PRO GLU GLU THR HIS ILE HIS SEQRES 8 C 156 PHE ASP LEU ILE TYR LEU VAL LYS ARG VAL GLY GLY ASP SEQRES 9 C 156 LEU LYS ASN GLY GLU TRP ILE ASP VAL ARG GLU ILE ASP SEQRES 10 C 156 ARG ILE GLU THR PHE PRO ASN VAL ARG LYS VAL VAL SER SEQRES 11 C 156 LEU ALA LEU SER THR LEU TYR ARG LEU GLY LYS ILE SER SEQRES 12 C 156 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 156 MET ILE VAL THR SER GLY VAL LEU VAL GLU ASN GLY LYS SEQRES 2 D 156 VAL LEU LEU VAL LYS HIS LYS ARG LEU GLY VAL TYR ILE SEQRES 3 D 156 TYR PRO GLY GLY HIS VAL GLU HIS ASN GLU THR PRO ILE SEQRES 4 D 156 GLU ALA VAL LYS ARG GLU PHE GLU GLU GLU THR GLY ILE SEQRES 5 D 156 VAL VAL GLU PRO ILE GLY PHE THR TYR GLY ILE ILE ASP SEQRES 6 D 156 GLU ASN ALA VAL GLU ARG PRO MET PRO LEU VAL ILE LEU SEQRES 7 D 156 GLU GLU VAL VAL LYS TYR PRO GLU GLU THR HIS ILE HIS SEQRES 8 D 156 PHE ASP LEU ILE TYR LEU VAL LYS ARG VAL GLY GLY ASP SEQRES 9 D 156 LEU LYS ASN GLY GLU TRP ILE ASP VAL ARG GLU ILE ASP SEQRES 10 D 156 ARG ILE GLU THR PHE PRO ASN VAL ARG LYS VAL VAL SER SEQRES 11 D 156 LEU ALA LEU SER THR LEU TYR ARG LEU GLY LYS ILE SER SEQRES 12 D 156 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET MPD A 203 8 HET MPD B 202 8 HET MPD B 204 8 HET MPD C 201 8 HET MPD C 205 8 HET MPD C 206 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 5 MPD 6(C6 H14 O2) FORMUL 11 HOH *173(H2 O) HELIX 1 1 THR A 37 GLY A 51 1 15 HELIX 2 2 GLU A 115 ILE A 119 5 5 HELIX 3 3 ASN A 124 ALA A 148 1 25 HELIX 4 4 THR B 37 GLY B 51 1 15 HELIX 5 5 GLU B 115 ILE B 119 5 5 HELIX 6 6 PRO B 123 SER B 143 1 21 HELIX 7 7 THR C 37 GLY C 51 1 15 HELIX 8 8 GLU C 115 ILE C 119 5 5 HELIX 9 9 ASN C 124 LYS C 141 1 18 HELIX 10 10 THR D 37 GLY D 51 1 15 HELIX 11 11 GLU D 115 ILE D 119 5 5 HELIX 12 12 ASN D 124 GLU D 150 1 27 SHEET 1 A 6 ILE B 64 ASP B 65 0 SHEET 2 A 6 ALA B 68 GLU B 70 -1 O ALA B 68 N ASP B 65 SHEET 3 A 6 VAL A 76 VAL A 82 -1 N GLU A 79 O VAL B 69 SHEET 4 A 6 HIS A 89 GLY A 103 -1 O ASP A 93 N LEU A 78 SHEET 5 A 6 ILE A 2 VAL A 7 0 SHEET 6 A 6 GLY A 29 HIS A 31 -1 O GLY A 30 N THR A 4 SHEET 1 B 5 ILE B 64 ASP B 65 0 SHEET 2 B 5 ALA B 68 GLU B 70 -1 O ALA B 68 N ASP B 65 SHEET 3 B 5 VAL A 76 VAL A 82 -1 N GLU A 79 O VAL B 69 SHEET 4 B 5 HIS A 89 GLY A 103 -1 O ASP A 93 N LEU A 78 SHEET 5 B 5 ILE A 52 ILE A 57 0 SHEET 1 C 3 TYR A 25 ILE A 26 0 SHEET 2 C 3 LYS A 13 LYS A 18 -1 N VAL A 17 O ILE A 26 SHEET 3 C 3 GLU A 109 ASP A 112 -1 O ILE A 111 N VAL A 14 SHEET 1 D 6 ILE A 64 ASP A 65 0 SHEET 2 D 6 ALA A 68 GLU A 70 -1 O ALA A 68 N ASP A 65 SHEET 3 D 6 VAL B 76 LYS B 83 -1 O GLU B 79 N VAL A 69 SHEET 4 D 6 THR B 88 GLY B 103 -1 O ASP B 93 N LEU B 78 SHEET 5 D 6 ILE B 2 VAL B 7 0 SHEET 6 D 6 GLY B 29 HIS B 31 -1 O GLY B 30 N THR B 4 SHEET 1 E 5 ILE A 64 ASP A 65 0 SHEET 2 E 5 ALA A 68 GLU A 70 -1 O ALA A 68 N ASP A 65 SHEET 3 E 5 VAL B 76 LYS B 83 -1 O GLU B 79 N VAL A 69 SHEET 4 E 5 THR B 88 GLY B 103 -1 O ASP B 93 N LEU B 78 SHEET 5 E 5 ILE B 52 PRO B 56 0 SHEET 1 F 3 GLU B 109 ASP B 112 0 SHEET 2 F 3 LYS B 13 LYS B 18 -1 N VAL B 14 O ILE B 111 SHEET 3 F 3 VAL B 9 GLU B 10 0 SHEET 1 G 3 GLU B 109 ASP B 112 0 SHEET 2 G 3 LYS B 13 LYS B 18 -1 N VAL B 14 O ILE B 111 SHEET 3 G 3 TYR B 25 ILE B 26 0 SHEET 1 H 6 ILE D 64 ASP D 65 0 SHEET 2 H 6 ALA D 68 GLU D 70 -1 O ALA D 68 N ASP D 65 SHEET 3 H 6 VAL C 76 TYR C 84 -1 N GLU C 79 O VAL D 69 SHEET 4 H 6 GLU C 87 GLY C 103 -1 O ASP C 93 N LEU C 78 SHEET 5 H 6 ILE C 2 VAL C 7 0 SHEET 6 H 6 GLY C 29 HIS C 31 -1 O GLY C 30 N THR C 4 SHEET 1 I 5 ILE D 64 ASP D 65 0 SHEET 2 I 5 ALA D 68 GLU D 70 -1 O ALA D 68 N ASP D 65 SHEET 3 I 5 VAL C 76 TYR C 84 -1 N GLU C 79 O VAL D 69 SHEET 4 I 5 GLU C 87 GLY C 103 -1 O ASP C 93 N LEU C 78 SHEET 5 I 5 ILE C 52 ILE C 57 0 SHEET 1 J 3 GLU C 109 ASP C 112 0 SHEET 2 J 3 LYS C 13 LYS C 18 -1 N VAL C 14 O ILE C 111 SHEET 3 J 3 VAL C 9 GLU C 10 0 SHEET 1 K 3 GLU C 109 ASP C 112 0 SHEET 2 K 3 LYS C 13 LYS C 18 -1 N VAL C 14 O ILE C 111 SHEET 3 K 3 TYR C 25 ILE C 26 0 SHEET 1 L 5 ALA C 68 GLU C 70 0 SHEET 2 L 5 VAL D 76 LYS D 83 -1 O GLU D 79 N VAL C 69 SHEET 3 L 5 THR D 88 GLY D 103 -1 O ASP D 93 N LEU D 78 SHEET 4 L 5 ILE D 2 VAL D 7 0 SHEET 5 L 5 GLY D 29 HIS D 31 -1 O GLY D 30 N THR D 4 SHEET 1 M 4 ALA C 68 GLU C 70 0 SHEET 2 M 4 VAL D 76 LYS D 83 -1 O GLU D 79 N VAL C 69 SHEET 3 M 4 THR D 88 GLY D 103 -1 O ASP D 93 N LEU D 78 SHEET 4 M 4 ILE D 52 ILE D 57 0 SHEET 1 N 3 GLU D 109 ASP D 112 0 SHEET 2 N 3 LYS D 13 LYS D 18 -1 N LEU D 16 O GLU D 109 SHEET 3 N 3 VAL D 9 GLU D 10 0 SHEET 1 O 3 GLU D 109 ASP D 112 0 SHEET 2 O 3 LYS D 13 LYS D 18 -1 N LEU D 16 O GLU D 109 SHEET 3 O 3 TYR D 25 ILE D 26 0 SITE 1 AC1 8 LEU A 145 GLY C 58 PHE C 59 MET C 73 SITE 2 AC1 8 PRO C 74 LEU C 75 TYR D 61 MET D 73 SITE 1 AC2 7 LEU B 8 VAL B 9 GLU B 10 VAL B 98 SITE 2 AC2 7 LYS B 99 ARG B 100 LEU D 149 SITE 1 AC3 4 PHE A 59 THR A 60 TYR A 61 ILE C 142 SITE 1 AC4 6 TYR A 61 GLY B 58 PHE B 59 MET B 73 SITE 2 AC4 6 PRO B 74 LEU B 75 SITE 1 AC5 4 HIS C 19 LYS C 20 GLY C 29 GLU C 49 SITE 1 AC6 5 GLU C 10 ASN C 11 LYS C 13 ARG C 100 SITE 2 AC6 5 TRP C 110 CRYST1 52.469 81.464 73.888 90.00 99.96 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019059 0.000000 0.003347 0.00000 SCALE2 0.000000 0.012275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013741 0.00000