HEADER VIRAL PROTEIN 17-AUG-01 1JSN TITLE STRUCTURE OF AVIAN H5 HAEMAGGLUTININ COMPLEXED WITH LSTA RECEPTRO TITLE 2 ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: HAEMAGGLUTININ (HA1 CHAIN); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-325; COMPND 5 OTHER_DETAILS: AUTO CLEAVED FRAGMENT OF N-TERMINUS; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HAEMAGGLUTININ (HA2 CHAIN); COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 1-176; COMPND 10 OTHER_DETAILS: AUTO CLEAVED FRAGMENT OF C-TERMINUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/DUCK/SINGAPORE/3/97; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 7 ORGANISM_TAXID: 11320; SOURCE 8 STRAIN: A/DUCK/SINGAPORE/3/97 KEYWDS INFLUENZA, RECEPTOR COMPLEX, FUSION PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.HA,D.J.STEVENS,J.J.SKEHEL,D.C.WILEY REVDAT 7 16-OCT-24 1JSN 1 HETSYN REVDAT 6 29-JUL-20 1JSN 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 13-JUL-11 1JSN 1 VERSN REVDAT 4 24-FEB-09 1JSN 1 VERSN REVDAT 3 01-APR-03 1JSN 1 JRNL REVDAT 2 03-OCT-01 1JSN 1 JRNL REVDAT 1 26-SEP-01 1JSN 0 JRNL AUTH Y.HA,D.J.STEVENS,J.J.SKEHEL,D.C.WILEY JRNL TITL X-RAY STRUCTURES OF H5 AVIAN AND H9 SWINE INFLUENZA VIRUS JRNL TITL 2 HEMAGGLUTININS BOUND TO AVIAN AND HUMAN RECEPTOR ANALOGS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 11181 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11562490 JRNL DOI 10.1073/PNAS.201401198 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 27009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2042 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27009 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 40.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MME-PEG 2000, NICL2, HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 65.81300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.99715 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 84.70333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 65.81300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.99715 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 84.70333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 65.81300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.99715 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 84.70333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 65.81300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.99715 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 84.70333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 65.81300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.99715 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.70333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 65.81300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.99715 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 84.70333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.99431 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 169.40667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 75.99431 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 169.40667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 75.99431 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 169.40667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 75.99431 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 169.40667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 75.99431 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 169.40667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 75.99431 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 169.40667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 322 REMARK 465 ARG A 323 REMARK 465 GLU A 324 REMARK 465 THR A 325 REMARK 465 GLN B 161 REMARK 465 TYR B 162 REMARK 465 SER B 163 REMARK 465 GLU B 164 REMARK 465 GLU B 165 REMARK 465 ALA B 166 REMARK 465 ARG B 167 REMARK 465 LEU B 168 REMARK 465 ASN B 169 REMARK 465 ARG B 170 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 ILE B 173 REMARK 465 SER B 174 REMARK 465 GLY B 175 REMARK 465 VAL B 176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 93 CB CG CD OE1 OE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS A 277 CD CE NZ REMARK 470 GLU A 301 CD OE1 OE2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 GLU B 11 CD OE1 OE2 REMARK 470 VAL B 18 CG1 CG2 REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 LYS B 38 CD CE NZ REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 LYS B 43 CD CE NZ REMARK 470 LYS B 83 CD CE NZ REMARK 470 LEU B 89 CG CD1 CD2 REMARK 470 LEU B 124 CD1 CD2 REMARK 470 ARG B 127 CD NE CZ NH1 NH2 REMARK 470 ASP B 128 CG OD1 OD2 REMARK 470 LYS B 131 CD CE NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 THR B 156 OG1 CG2 REMARK 470 ASP B 158 CG OD1 OD2 REMARK 470 TYR B 159 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO B 160 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 180 O HOH B 180 11446 1.08 REMARK 500 NE2 HIS B 142 NE2 HIS B 142 11446 2.11 REMARK 500 OD1 ASN A 206 NH1 ARG A 216 3655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 8 154.17 -48.84 REMARK 500 ARG A 53 -106.01 56.49 REMARK 500 GLU A 93 -154.32 164.95 REMARK 500 ASP A 97 43.43 39.07 REMARK 500 SER A 142 -149.84 -130.69 REMARK 500 GLN A 192 -46.42 71.53 REMARK 500 THR A 202 -151.05 -124.41 REMARK 500 ASN A 236 -6.39 78.70 REMARK 500 GLU A 251 -57.63 -125.72 REMARK 500 LYS A 258 45.47 -80.43 REMARK 500 SER A 262 -97.15 -131.09 REMARK 500 ALA A 263 139.71 97.82 REMARK 500 ASN A 273 71.49 41.99 REMARK 500 HIS A 295 143.56 -171.10 REMARK 500 GLU A 301 93.29 -66.91 REMARK 500 LEU A 311 89.55 -154.28 REMARK 500 THR A 315 -50.23 -126.52 REMARK 500 ALA B 5 -81.93 -71.15 REMARK 500 GLN B 15 1.41 -58.16 REMARK 500 VAL B 18 -16.05 -42.74 REMARK 500 ALA B 35 116.81 -161.12 REMARK 500 LEU B 124 3.50 -69.85 REMARK 500 ARG B 127 -113.02 36.43 REMARK 500 TYR B 141 -60.65 -99.30 REMARK 500 LYS B 143 137.92 -30.46 REMARK 500 ASP B 145 -157.01 -120.84 REMARK 500 GLU B 150 -4.09 -58.29 REMARK 500 THR B 156 42.34 -109.91 REMARK 500 ASP B 158 128.27 98.12 REMARK 500 TYR B 159 8.80 -66.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JSI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF H9 HAEMAGGLUTININ BOUND TO LSTC RECEPTOR ANALOG REMARK 900 RELATED ID: 1JSH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF H9 HAEMAGGLUTININ COMPLEXED WITH LSTA RECEPTOR REMARK 900 ANALOG REMARK 900 RELATED ID: 1JSD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SWINE H9 HAEMAGGLUTININ REMARK 900 RELATED ID: 1JSM RELATED DB: PDB REMARK 900 STRUCTURE OF H5 AVIAN HAEMAGGLUTININ REMARK 900 RELATED ID: 1JSO RELATED DB: PDB REMARK 900 STRUCTURE OF AVIAN H5 HAEMAGGLUTININ BOUND TO LSTC RECEPTOR ANALOG DBREF 1JSN A 1 325 UNP A5Z226 A5Z226_I97A2 17 341 DBREF 1JSN B 1 176 PDB 1JSN 1JSN 1 176 SEQRES 1 A 325 ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 2 A 325 GLU GLN VAL ASP THR ILE MET GLU LYS ASN VAL THR VAL SEQRES 3 A 325 THR HIS ALA GLN ASP ILE LEU GLU LYS THR HIS ASN GLY SEQRES 4 A 325 LYS LEU CYS ASP LEU ASN GLY VAL LYS PRO LEU ILE LEU SEQRES 5 A 325 ARG ASP CYS SER VAL ALA GLY TRP LEU LEU GLY ASN PRO SEQRES 6 A 325 MET CYS ASP GLU PHE LEU ASN VAL PRO GLU TRP SER TYR SEQRES 7 A 325 ILE VAL GLU LYS ASP ASN PRO VAL ASN GLY LEU CYS TYR SEQRES 8 A 325 PRO GLU ASN PHE ASN ASP TYR GLU GLU LEU LYS HIS LEU SEQRES 9 A 325 LEU SER SER THR ASN HIS PHE GLU LYS ILE ARG ILE ILE SEQRES 10 A 325 PRO ARG SER SER TRP SER ASN HIS ASP ALA SER SER GLY SEQRES 11 A 325 VAL SER SER ALA CYS PRO TYR ASN GLY ARG SER SER PHE SEQRES 12 A 325 PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASN ASN ALA SEQRES 13 A 325 TYR PRO THR ILE LYS ARG SER TYR ASN ASN THR ASN GLN SEQRES 14 A 325 GLU ASP LEU LEU ILE LEU TRP GLY ILE HIS HIS PRO ASN SEQRES 15 A 325 ASP ALA ALA GLU GLN THR LYS LEU TYR GLN ASN PRO THR SEQRES 16 A 325 THR TYR VAL SER VAL GLY THR SER THR LEU ASN GLN ARG SEQRES 17 A 325 SER VAL PRO GLU ILE ALA THR ARG PRO LYS VAL ASN GLY SEQRES 18 A 325 GLN SER GLY ARG MET GLU PHE PHE TRP THR ILE LEU LYS SEQRES 19 A 325 PRO ASN ASP ALA ILE ASN PHE GLU SER ASN GLY ASN PHE SEQRES 20 A 325 ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS LYS GLY SEQRES 21 A 325 GLY SER ALA ILE MET LYS SER GLY LEU GLU TYR GLY ASN SEQRES 22 A 325 CYS ASN THR LYS CYS GLN THR PRO MET GLY ALA ILE ASN SEQRES 23 A 325 SER SER MET PRO PHE HIS ASN ILE HIS PRO LEU THR ILE SEQRES 24 A 325 GLY GLU CYS PRO LYS TYR VAL LYS SER GLY ARG LEU VAL SEQRES 25 A 325 LEU ALA THR GLY LEU ARG ASN VAL PRO GLN ARG GLU THR SEQRES 1 B 176 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 176 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 176 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 B 176 SER THR GLN LYS ALA ILE ASP GLY THR THR ASN LYS VAL SEQRES 5 B 176 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 B 176 VAL GLY LYS GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 B 176 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 B 176 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 B 176 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 176 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 B 176 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 176 CYS ASP ASN GLU CYS MET GLU SER VAL LYS ASN GLY THR SEQRES 13 B 176 TYR ASP TYR PRO GLN TYR SER GLU GLU ALA ARG LEU ASN SEQRES 14 B 176 ARG GLU GLU ILE SER GLY VAL MODRES 1JSN ASN A 11 ASN GLYCOSYLATION SITE MODRES 1JSN ASN A 23 ASN GLYCOSYLATION SITE MODRES 1JSN ASN A 165 ASN GLYCOSYLATION SITE MODRES 1JSN ASN A 286 ASN GLYCOSYLATION SITE MODRES 1JSN ASN B 154 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 15 HET GAL D 2 11 HET SIA D 3 20 HET NAG E 1 14 HET NAG E 2 14 HET NAG A 326 14 HET NAG A 327 14 HET NAG A 331 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 4 GAL C6 H12 O6 FORMUL 4 SIA C11 H19 N O9 FORMUL 9 HOH *216(H2 O) HELIX 1 1 SER A 56 GLY A 63 1 8 HELIX 2 2 ASN A 64 LEU A 71 5 8 HELIX 3 3 ASP A 97 SER A 106 1 10 HELIX 4 4 PRO A 118 TRP A 122 5 5 HELIX 5 5 ASP A 183 GLN A 192 1 10 HELIX 6 6 ASP B 37 MET B 59 1 23 HELIX 7 7 GLU B 74 ARG B 127 1 54 HELIX 8 8 ASP B 145 GLY B 155 1 11 SHEET 1 A 5 GLY B 31 ALA B 36 0 SHEET 2 A 5 TYR B 22 ASN B 28 -1 N TYR B 24 O ALA B 35 SHEET 3 A 5 GLN A 2 TYR A 7 -1 N GLY A 6 O GLY B 23 SHEET 4 A 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 3 SHEET 5 A 5 ALA B 130 GLU B 132 -1 N LYS B 131 O GLU B 139 SHEET 1 B 2 GLN A 15 VAL A 16 0 SHEET 2 B 2 VAL A 24 THR A 25 -1 O VAL A 24 N VAL A 16 SHEET 1 C 2 ALA A 29 ASP A 31 0 SHEET 2 C 2 VAL A 312 ALA A 314 -1 O LEU A 313 N GLN A 30 SHEET 1 D 3 LEU A 33 GLU A 34 0 SHEET 2 D 3 PHE A 291 HIS A 292 1 O PHE A 291 N GLU A 34 SHEET 3 D 3 LYS A 304 TYR A 305 1 O LYS A 304 N HIS A 292 SHEET 1 E 2 LEU A 41 LEU A 44 0 SHEET 2 E 2 TYR A 271 THR A 276 1 O CYS A 274 N ASP A 43 SHEET 1 F 3 LEU A 50 ILE A 51 0 SHEET 2 F 3 ILE A 79 GLU A 81 1 O VAL A 80 N LEU A 50 SHEET 3 F 3 ILE A 264 LYS A 266 1 O MET A 265 N ILE A 79 SHEET 1 G 5 GLU A 93 PHE A 95 0 SHEET 2 G 5 ARG A 225 LEU A 233 1 O MET A 226 N ASN A 94 SHEET 3 G 5 ASP A 171 HIS A 180 -1 N LEU A 172 O LEU A 233 SHEET 4 G 5 PHE A 247 PRO A 250 -1 O ILE A 248 N GLY A 177 SHEET 5 G 5 VAL A 147 TRP A 149 -1 N VAL A 148 O ALA A 249 SHEET 1 H 5 GLU A 93 PHE A 95 0 SHEET 2 H 5 ARG A 225 LEU A 233 1 O MET A 226 N ASN A 94 SHEET 3 H 5 ASP A 171 HIS A 180 -1 N LEU A 172 O LEU A 233 SHEET 4 H 5 TYR A 252 ILE A 256 -1 O TYR A 254 N LEU A 173 SHEET 5 H 5 GLU A 112 ARG A 115 -1 N GLU A 112 O LYS A 255 SHEET 1 I 2 SER A 132 TYR A 137 0 SHEET 2 I 2 ARG A 140 SER A 142 -1 O SER A 142 N SER A 132 SHEET 1 J 4 ILE A 160 ASN A 165 0 SHEET 2 J 4 ALA A 238 SER A 243 -1 O SER A 243 N ILE A 160 SHEET 3 J 4 VAL A 198 GLY A 201 -1 N SER A 199 O GLU A 242 SHEET 4 J 4 ASN A 206 SER A 209 -1 O GLN A 207 N VAL A 200 SHEET 1 K 3 GLY A 283 ILE A 285 0 SHEET 2 K 3 CYS A 278 THR A 280 -1 N CYS A 278 O ILE A 285 SHEET 3 K 3 ILE A 299 GLY A 300 -1 O ILE A 299 N GLN A 279 SSBOND 1 CYS A 4 CYS B 137 1555 1555 2.04 SSBOND 2 CYS A 42 CYS A 274 1555 1555 2.05 SSBOND 3 CYS A 55 CYS A 67 1555 1555 2.04 SSBOND 4 CYS A 90 CYS A 135 1555 1555 2.07 SSBOND 5 CYS A 278 CYS A 302 1555 1555 2.05 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.03 LINK ND2 ASN A 11 C1 NAG A 326 1555 1555 1.45 LINK ND2 ASN A 23 C1 NAG A 327 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 286 C1 NAG A 331 1555 1555 1.46 LINK ND2 ASN B 154 C1 NAG E 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O3 NAG D 1 C1 GAL D 2 1555 1555 1.39 LINK O3 GAL D 2 C2 SIA D 3 1555 1555 1.39 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.40 CRYST1 131.626 131.626 254.110 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007597 0.004386 0.000000 0.00000 SCALE2 0.000000 0.008773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003935 0.00000