HEADER IMMUNE SYSTEM, LYSOZYME 22-AUG-01 1JTT TITLE DEGENERATE INTERFACES IN ANTIGEN-ANTIBODY COMPLEXES COMPND MOL_ID: 1; COMPND 2 MOLECULE: VH SINGLE-DOMAIN ANTIBODY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: VH DOMAIN FRAGMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LYSOZYME; COMPND 8 CHAIN: L; COMPND 9 FRAGMENT: ENZYME; COMPND 10 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 11 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_COMMON: ARABIAN CAMEL; SOURCE 4 ORGANISM_TAXID: 9838; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHEN1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 11 ORGANISM_COMMON: CHICKEN; SOURCE 12 ORGANISM_TAXID: 9031; SOURCE 13 OTHER_DETAILS: PURCHASED FROM SIGMA KEYWDS IMMUNOGLOBULIN, HEAVY CHAIN ANTIBODY, VHH, INTERFACE, IMMUNE SYSTEM, KEYWDS 2 LYSOZYME EXPDTA X-RAY DIFFRACTION AUTHOR K.DECANNIERE,T.R.TRANSUE,A.DESMYTER,D.MAES,S.MUYLDERMANS,L.WYNS REVDAT 6 30-OCT-24 1JTT 1 REMARK REVDAT 5 16-AUG-23 1JTT 1 REMARK LINK REVDAT 4 04-OCT-17 1JTT 1 REMARK REVDAT 3 24-FEB-09 1JTT 1 VERSN REVDAT 2 12-AUG-03 1JTT 1 DBREF REVDAT 1 05-DEC-01 1JTT 0 JRNL AUTH K.DECANNIERE,T.R.TRANSUE,A.DESMYTER,D.MAES,S.MUYLDERMANS, JRNL AUTH 2 L.WYNS JRNL TITL DEGENERATE INTERFACES IN ANTIGEN-ANTIBODY COMPLEXES. JRNL REF J.MOL.BIOL. V. 313 473 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11676532 JRNL DOI 10.1006/JMBI.2001.5075 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.DESMYTER,T.R.TRANSUE,M.A.GHAHROUDI,M.H.THI,F.POORTMANS, REMARK 1 AUTH 2 R.HAMERS,S.MUYLDERMANS,L.WYNS REMARK 1 TITL CRYSTAL STRUCTURE OF A CAMEL SINGLE-DOMAIN VH ANTIBODY REMARK 1 TITL 2 FRAGMENT IN COMPLEX WITH LYSOZYME REMARK 1 REF NAT.STRUCT.BIOL. V. 3 803 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 9.1 REMARK 3 NUMBER OF REFLECTIONS : 19935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : RFREE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.79100 REMARK 3 B22 (A**2) : -1.14100 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.39600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : SI CRYSTAL MONOCHROMETER REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : 0.15000 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : 0.43200 REMARK 200 FOR SHELL : 3.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1MEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NAFORMATE, 100MM NA CITRATE, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.11000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.11000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.84563 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -36.42000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.98256 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 503 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 92 172.50 174.73 REMARK 500 THR A 115 46.50 -107.87 REMARK 500 ASP L 101 -122.71 68.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH L 490 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 42 O REMARK 620 2 ASN L 103 O 140.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 74 O REMARK 620 2 ASN A 74 OD1 81.1 REMARK 620 3 ASN A 77 OD1 88.7 151.8 REMARK 620 4 HOH A 415 O 160.8 81.3 110.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 OD1 REMARK 620 2 GLY A 119 O 84.1 REMARK 620 3 ASP A 121 OD2 96.6 85.0 REMARK 620 4 HOH A 467 O 85.3 106.0 169.0 REMARK 620 5 HOH A 507 O 120.8 148.2 73.4 96.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR L 20 OH REMARK 620 2 LYS L 96 O 82.6 REMARK 620 3 VAL L 99 O 118.9 77.2 REMARK 620 4 FMT L 406 O2 67.7 84.5 159.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU L 35 OE1 REMARK 620 2 FMT L 404 O2 90.1 REMARK 620 3 HOH L 440 O 92.8 153.7 REMARK 620 4 HOH L 441 O 112.3 115.3 87.7 REMARK 620 5 HOH L 472 O 82.1 81.1 73.4 157.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER L 60 O REMARK 620 2 CYS L 64 O 81.4 REMARK 620 3 SER L 72 OG 91.5 161.8 REMARK 620 4 ARG L 73 O 99.1 92.4 105.2 REMARK 620 5 HOH L 454 O 172.6 100.5 84.6 88.0 REMARK 620 6 HOH L 455 O 83.8 85.3 77.2 176.1 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA L 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT L 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT L 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT L 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT L 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT L 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT L 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT L 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT L 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MEL RELATED DB: PDB REMARK 900 RELATED ID: 1JTO RELATED DB: PDB REMARK 900 RELATED ID: 1JTP RELATED DB: PDB DBREF 1JTT A 1 133 GB 2392447 2392447 1 133 DBREF 1JTT L 1 120 UNP P00698 LYSC_CHICK 19 138 SEQRES 1 A 133 ASP VAL GLN LEU GLN ALA SER GLY GLY GLY SER VAL GLN SEQRES 2 A 133 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 133 TYR THR ILE GLY PRO TYR CYS MET GLY TRP PHE ARG GLN SEQRES 4 A 133 ALA PRO GLY LYS GLU ARG GLU GLY VAL ALA ALA ILE ASN SEQRES 5 A 133 MET GLY GLY GLY ILE THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 133 GLY ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR SEQRES 7 A 133 VAL TYR LEU LEU MET ASN SER LEU GLU PRO GLU ASP THR SEQRES 8 A 133 ALA ILE TYR TYR CYS ALA ALA ASP SER THR ILE TYR ALA SEQRES 9 A 133 SER TYR TYR GLU CYS GLY HIS GLY LEU SER THR GLY GLY SEQRES 10 A 133 TYR GLY TYR ASP SER TRP GLY GLN GLY THR GLN VAL THR SEQRES 11 A 133 VAL SER SER SEQRES 1 L 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 L 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 L 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 L 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 L 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 L 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 L 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 L 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 L 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 L 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET NA A 301 1 HET NA A 306 1 HET NA A 307 1 HET FMT A 403 3 HET NA L 302 1 HET NA L 304 1 HET NA L 305 1 HET FMT L 401 3 HET FMT L 402 3 HET FMT L 404 3 HET FMT L 405 3 HET FMT L 406 3 HET FMT L 407 3 HET FMT L 408 3 HET FMT L 409 3 HETNAM NA SODIUM ION HETNAM FMT FORMIC ACID FORMUL 3 NA 6(NA 1+) FORMUL 6 FMT 9(C H2 O2) FORMUL 18 HOH *213(H2 O) HELIX 1 1 ASN A 74 LYS A 76 5 3 HELIX 2 2 GLU A 87 THR A 91 5 5 HELIX 3 3 GLY A 110 THR A 115 1 6 HELIX 4 4 GLY L 4 HIS L 15 1 12 HELIX 5 5 ASN L 19 TYR L 23 5 5 HELIX 6 6 SER L 24 ASN L 37 1 14 HELIX 7 7 PRO L 79 SER L 85 5 7 HELIX 8 8 ILE L 88 VAL L 99 1 12 HELIX 9 9 GLY L 104 ALA L 107 5 4 HELIX 10 10 TRP L 108 CYS L 115 1 8 HELIX 11 11 ASP L 119 ARG L 125 5 7 SHEET 1 A 4 GLN A 3 GLY A 8 0 SHEET 2 A 4 LEU A 18 SER A 25 -1 O SER A 25 N GLN A 3 SHEET 3 A 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 A 4 PHE A 68 ASP A 73 -1 N THR A 69 O LEU A 82 SHEET 1 B 5 THR A 58 TYR A 60 0 SHEET 2 B 5 GLU A 46 ASN A 52 -1 N ALA A 50 O TYR A 59 SHEET 3 B 5 CYS A 33 GLN A 39 -1 N TRP A 36 O ALA A 49 SHEET 4 B 5 ALA A 92 ASP A 99 -1 O TYR A 95 N PHE A 37 SHEET 5 B 5 SER A 122 TRP A 123 -1 O SER A 122 N ALA A 98 SHEET 1 C 6 THR A 58 TYR A 60 0 SHEET 2 C 6 GLU A 46 ASN A 52 -1 N ALA A 50 O TYR A 59 SHEET 3 C 6 CYS A 33 GLN A 39 -1 N TRP A 36 O ALA A 49 SHEET 4 C 6 ALA A 92 ASP A 99 -1 O TYR A 95 N PHE A 37 SHEET 5 C 6 THR A 127 SER A 132 -1 O THR A 127 N TYR A 94 SHEET 6 C 6 GLY A 10 GLN A 13 1 N VAL A 12 O SER A 132 SHEET 1 D 3 THR L 43 ARG L 45 0 SHEET 2 D 3 THR L 51 TYR L 53 -1 O ASP L 52 N ASN L 44 SHEET 3 D 3 ILE L 58 ASN L 59 -1 O ILE L 58 N TYR L 53 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.02 SSBOND 2 CYS A 33 CYS A 109 1555 1555 2.06 SSBOND 3 CYS L 6 CYS L 127 1555 1555 2.05 SSBOND 4 CYS L 30 CYS L 115 1555 1555 2.06 SSBOND 5 CYS L 64 CYS L 80 1555 1555 2.05 SSBOND 6 CYS L 76 CYS L 94 1555 1555 2.02 LINK O GLY A 42 NA NA A 307 1555 1555 2.82 LINK O ASN A 74 NA NA A 306 1555 1555 2.75 LINK OD1 ASN A 74 NA NA A 306 1555 1555 2.73 LINK OD1 ASN A 77 NA NA A 306 1555 1555 2.55 LINK OD1 ASP A 99 NA NA A 301 1555 1555 2.48 LINK O GLY A 119 NA NA A 301 1555 1555 2.29 LINK OD2 ASP A 121 NA NA A 301 1555 1555 2.54 LINK NA NA A 301 O HOH A 467 1555 1555 2.43 LINK NA NA A 301 O HOH A 507 1555 1555 2.34 LINK NA NA A 306 O HOH A 415 1555 1555 2.36 LINK NA NA A 307 O ASN L 103 1555 4556 2.58 LINK OH TYR L 20 NA NA L 304 1555 1555 2.82 LINK OE1 GLU L 35 NA NA L 305 1555 1555 2.50 LINK O SER L 60 NA NA L 302 1555 1555 2.33 LINK O CYS L 64 NA NA L 302 1555 1555 2.48 LINK OG SER L 72 NA NA L 302 1555 1555 2.48 LINK O ARG L 73 NA NA L 302 1555 1555 2.36 LINK O LYS L 96 NA NA L 304 1555 1555 2.54 LINK O VAL L 99 NA NA L 304 1555 1555 2.32 LINK NA NA L 302 O HOH L 454 1555 1555 2.41 LINK NA NA L 302 O HOH L 455 1555 1555 2.44 LINK NA NA L 304 O2 FMT L 406 1555 1555 2.97 LINK NA NA L 305 O2 FMT L 404 1555 1555 2.41 LINK NA NA L 305 O HOH L 440 1555 1555 2.42 LINK NA NA L 305 O HOH L 441 1555 1555 2.71 LINK NA NA L 305 O HOH L 472 1555 1555 2.78 CISPEP 1 GLY A 30 PRO A 31 0 0.15 CISPEP 2 GLY A 30 PRO A 31 0 0.63 SITE 1 AC1 6 ASP A 99 THR A 101 GLY A 119 ASP A 121 SITE 2 AC1 6 HOH A 467 HOH A 507 SITE 1 AC2 6 SER L 60 CYS L 64 SER L 72 ARG L 73 SITE 2 AC2 6 HOH L 454 HOH L 455 SITE 1 AC3 5 TYR L 20 LYS L 96 VAL L 99 SER L 100 SITE 2 AC3 5 FMT L 406 SITE 1 AC4 5 GLU L 35 FMT L 404 HOH L 440 HOH L 441 SITE 2 AC4 5 HOH L 472 SITE 1 AC5 3 ASN A 74 ASN A 77 HOH A 415 SITE 1 AC6 5 GLY A 42 ARG L 21 SER L 100 ASP L 101 SITE 2 AC6 5 ASN L 103 SITE 1 AC7 4 ALA L 42 ASN L 44 ARG L 68 HOH L 442 SITE 1 AC8 9 ASN L 65 GLY L 67 ARG L 68 THR L 69 SITE 2 AC8 9 PRO L 70 SER L 72 HOH L 454 HOH L 455 SITE 3 AC8 9 HOH L 478 SITE 1 AC9 8 ALA A 6 TYR A 94 TYR A 95 CYS A 96 SITE 2 AC9 8 GLY A 124 GLY A 126 THR A 127 HOH A 419 SITE 1 BC1 6 SER A 105 HOH A 471 GLU L 35 VAL L 109 SITE 2 BC1 6 ALA L 110 NA L 305 SITE 1 BC2 4 GLN A 39 HOH A 492 TYR L 20 ARG L 21 SITE 1 BC3 5 TYR L 20 LYS L 96 LYS L 97 NA L 304 SITE 2 BC3 5 HOH L 488 SITE 1 BC4 5 TYR A 106 ARG L 45 ASN L 46 THR L 47 SITE 2 BC4 5 HOH L 470 SITE 1 BC5 4 GLY L 4 ARG L 5 CYS L 6 GLU L 7 SITE 1 BC6 3 ILE A 29 HOH A 505 ARG L 5 CRYST1 128.220 72.840 38.660 90.00 106.94 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007799 0.000000 0.002375 0.00000 SCALE2 0.000000 0.013729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027040 0.00000