HEADER CYTOKINE 23-AUG-01 1JTZ TITLE CRYSTAL STRUCTURE OF TRANCE/RANKL CYTOKINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 11; COMPND 3 CHAIN: X, Y, Z; COMPND 4 FRAGMENT: C-TERMINAL RECEPTOR-BINDING ECTODOMAIN, RESIDUES 156-316; COMPND 5 SYNONYM: TNF-RELATED ACTIVATION-INDUCED CYTOKINE, TRANCE, RECEPTOR COMPND 6 ACTIVATOR OF NF-KAPPA-B LIGAND, RANKL, OSTEOCLAST DIFFERENTIATION COMPND 7 FACTOR, ODF, OSTEOPROTEGERIN LIGAND, OPGL, TNFSF11; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RANKL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS TUMOR NECROSIS FACTOR SUPERFAMILY MEMBER, JELLYROLL, BETA-SANDWICH, KEYWDS 2 CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.NELSON,D.H.FREMONT REVDAT 4 16-AUG-23 1JTZ 1 SEQADV REVDAT 3 24-FEB-09 1JTZ 1 VERSN REVDAT 2 28-JAN-03 1JTZ 1 JRNL REVDAT 1 12-SEP-01 1JTZ 0 JRNL AUTH J.LAM,C.A.NELSON,F.P.ROSS,S.L.TEITELBAUM,D.H.FREMONT JRNL TITL CRYSTAL STRUCTURE OF THE TRANCE/RANKL CYTOKINE REVEALS JRNL TITL 2 DETERMINANTS OF RECEPTOR-LIGAND SPECIFICITY JRNL REF J.CLIN.INVEST. V. 108 971 2001 JRNL REFN ISSN 0021-9738 JRNL PMID 11581298 JRNL DOI 10.1172/JCI200113890 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 53633.890 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 16018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 781 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1765 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE : 0.4400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 93 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.046 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3684 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.16000 REMARK 3 B22 (A**2) : 19.96000 REMARK 3 B33 (A**2) : -13.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.43 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.62 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.820 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.270 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.560 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.580 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.26 REMARK 3 BSOL : 36.73 REMARK 3 REMARK 3 NCS MODEL : NCS CONSTRAINED USING FIVE GROUPS, GROUPS 1-5 RMS FOR REMARK 3 X COMPARED TO Y, GROUPS 6-10 RMS FOR X COMPARED TO Z REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.3500; 10 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 2 POSITIONAL (A) : 0.8491; 2 REMARK 3 GROUP 2 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 3 POSITIONAL (A) : 1.1252; 2 REMARK 3 GROUP 3 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 4 POSITIONAL (A) : 1.1133; 2 REMARK 3 GROUP 4 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 5 POSITIONAL (A) : 1.6253; 2 REMARK 3 GROUP 5 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 6 POSITIONAL (A) : 0.3269; 10 REMARK 3 GROUP 6 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 7 POSITIONAL (A) : 0.8817; 2 REMARK 3 GROUP 7 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 8 POSITIONAL (A) : 0.7802; 2 REMARK 3 GROUP 8 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 9 POSITIONAL (A) : 0.7380; 2 REMARK 3 GROUP 9 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 10 POSITIONAL (A) : 1.4771; 2 REMARK 3 GROUP 10 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE FOLLOWING RESIDUES WERE INCLUDED IN 5 GROUPS REMARK 3 NCS GROUP 1:162-171,180-223,235-244,252-263,269-316 REMARK 3 NCS GROUP 2:172-179 REMARK 3 NCS GROUP 3:224-233 REMARK 3 NCS GROUP 4:245-251 REMARK 3 NCS GROUP 5:264-268 REMARK 3 NOTES: RESIDUES INCLUDED IN GROUPS 1-5 REMARK 3 (RMS FOR MONOMER X VERSUS MONOMER Y) IS REMARK 3 IDENTICAL TO GROUPS 6-10 (RMS FOR MONOMER REMARK 3 X VERSUS MONOMER Z) REMARK 4 REMARK 4 1JTZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16705 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44900 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: CHIMERA OF PDB ENTRIES 1TNR (CHAIN A) AND 1D4V REMARK 200 (CHAIN B) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-14% PEG 4000, 16 MM CALCIUM REMARK 280 CHLORIDE, 80 MM HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER WHICH COMPRISES THE REMARK 300 ASYMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X 146 REMARK 465 PRO X 147 REMARK 465 LEU X 148 REMARK 465 GLY X 149 REMARK 465 SER X 150 REMARK 465 PRO X 151 REMARK 465 GLU X 152 REMARK 465 PHE X 153 REMARK 465 PRO X 154 REMARK 465 ARG X 155 REMARK 465 ARG X 156 REMARK 465 GLY X 157 REMARK 465 LYS X 158 REMARK 465 PRO X 159 REMARK 465 GLU X 160 REMARK 465 ALA X 161 REMARK 465 GLY Y 146 REMARK 465 PRO Y 147 REMARK 465 LEU Y 148 REMARK 465 GLY Y 149 REMARK 465 SER Y 150 REMARK 465 PRO Y 151 REMARK 465 GLU Y 152 REMARK 465 PHE Y 153 REMARK 465 PRO Y 154 REMARK 465 ARG Y 155 REMARK 465 ARG Y 156 REMARK 465 GLY Y 157 REMARK 465 LYS Y 158 REMARK 465 PRO Y 159 REMARK 465 GLU Y 160 REMARK 465 ALA Y 161 REMARK 465 GLY Z 146 REMARK 465 PRO Z 147 REMARK 465 LEU Z 148 REMARK 465 GLY Z 149 REMARK 465 SER Z 150 REMARK 465 PRO Z 151 REMARK 465 GLU Z 152 REMARK 465 PHE Z 153 REMARK 465 PRO Z 154 REMARK 465 ARG Z 155 REMARK 465 ARG Z 156 REMARK 465 GLY Z 157 REMARK 465 LYS Z 158 REMARK 465 PRO Z 159 REMARK 465 GLU Z 160 REMARK 465 ALA Z 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO Y 249 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO Y 249 C - N - CD ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 172 -35.53 -38.14 REMARK 500 ASP X 189 -35.50 -133.96 REMARK 500 ASN X 197 -64.02 87.94 REMARK 500 THR X 232 131.25 174.57 REMARK 500 PRO X 249 2.59 -62.03 REMARK 500 ALA Y 165 136.60 -174.44 REMARK 500 SER Y 173 75.11 -113.66 REMARK 500 PRO Y 175 -145.10 -69.63 REMARK 500 HIS Y 179 150.45 -44.74 REMARK 500 HIS Y 188 13.43 -153.54 REMARK 500 ASP Y 189 -26.45 -141.70 REMARK 500 ASN Y 197 -70.46 90.78 REMARK 500 GLU Y 225 -17.61 -47.38 REMARK 500 SER Y 227 40.77 -91.76 REMARK 500 ASP Y 233 -70.41 -10.88 REMARK 500 LYS Y 247 12.58 -61.98 REMARK 500 ILE Y 248 83.77 153.04 REMARK 500 PRO Y 249 47.01 -42.81 REMARK 500 ASN Y 266 96.42 -53.23 REMARK 500 PHE Z 164 159.48 174.37 REMARK 500 PRO Z 175 -140.53 -73.95 REMARK 500 SER Z 176 134.26 -170.34 REMARK 500 HIS Z 188 27.65 -150.36 REMARK 500 ASP Z 189 -55.37 -146.69 REMARK 500 ASN Z 197 -67.97 72.48 REMARK 500 THR Z 232 -130.22 -163.46 REMARK 500 ILE Z 248 102.65 -160.15 REMARK 500 PRO Z 249 -2.71 -57.76 REMARK 500 SER Z 264 -151.59 -86.37 REMARK 500 SER Z 267 138.63 123.38 REMARK 500 TYR Z 272 125.44 -172.00 REMARK 500 GLN Z 313 146.34 -170.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 1JTZ X 156 316 UNP O35235 TNF11_MOUSE 156 316 DBREF 1JTZ Y 156 316 UNP O35235 TNF11_MOUSE 156 316 DBREF 1JTZ Z 156 316 UNP O35235 TNF11_MOUSE 156 316 SEQADV 1JTZ GLY X 146 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PRO X 147 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ LEU X 148 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ GLY X 149 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ SER X 150 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PRO X 151 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ GLU X 152 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PHE X 153 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PRO X 154 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ ARG X 155 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ GLY Y 146 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PRO Y 147 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ LEU Y 148 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ GLY Y 149 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ SER Y 150 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PRO Y 151 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ GLU Y 152 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PHE Y 153 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PRO Y 154 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ ARG Y 155 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ GLY Z 146 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PRO Z 147 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ LEU Z 148 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ GLY Z 149 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ SER Z 150 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PRO Z 151 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ GLU Z 152 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PHE Z 153 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ PRO Z 154 UNP O35235 CLONING ARTIFACT SEQADV 1JTZ ARG Z 155 UNP O35235 CLONING ARTIFACT SEQRES 1 X 171 GLY PRO LEU GLY SER PRO GLU PHE PRO ARG ARG GLY LYS SEQRES 2 X 171 PRO GLU ALA GLN PRO PHE ALA HIS LEU THR ILE ASN ALA SEQRES 3 X 171 ALA SER ILE PRO SER GLY SER HIS LYS VAL THR LEU SER SEQRES 4 X 171 SER TRP TYR HIS ASP ARG GLY TRP ALA LYS ILE SER ASN SEQRES 5 X 171 MET THR LEU SER ASN GLY LYS LEU ARG VAL ASN GLN ASP SEQRES 6 X 171 GLY PHE TYR TYR LEU TYR ALA ASN ILE CYS PHE ARG HIS SEQRES 7 X 171 HIS GLU THR SER GLY SER VAL PRO THR ASP TYR LEU GLN SEQRES 8 X 171 LEU MET VAL TYR VAL VAL LYS THR SER ILE LYS ILE PRO SEQRES 9 X 171 SER SER HIS ASN LEU MET LYS GLY GLY SER THR LYS ASN SEQRES 10 X 171 TRP SER GLY ASN SER GLU PHE HIS PHE TYR SER ILE ASN SEQRES 11 X 171 VAL GLY GLY PHE PHE LYS LEU ARG ALA GLY GLU GLU ILE SEQRES 12 X 171 SER ILE GLN VAL SER ASN PRO SER LEU LEU ASP PRO ASP SEQRES 13 X 171 GLN ASP ALA THR TYR PHE GLY ALA PHE LYS VAL GLN ASP SEQRES 14 X 171 ILE ASP SEQRES 1 Y 171 GLY PRO LEU GLY SER PRO GLU PHE PRO ARG ARG GLY LYS SEQRES 2 Y 171 PRO GLU ALA GLN PRO PHE ALA HIS LEU THR ILE ASN ALA SEQRES 3 Y 171 ALA SER ILE PRO SER GLY SER HIS LYS VAL THR LEU SER SEQRES 4 Y 171 SER TRP TYR HIS ASP ARG GLY TRP ALA LYS ILE SER ASN SEQRES 5 Y 171 MET THR LEU SER ASN GLY LYS LEU ARG VAL ASN GLN ASP SEQRES 6 Y 171 GLY PHE TYR TYR LEU TYR ALA ASN ILE CYS PHE ARG HIS SEQRES 7 Y 171 HIS GLU THR SER GLY SER VAL PRO THR ASP TYR LEU GLN SEQRES 8 Y 171 LEU MET VAL TYR VAL VAL LYS THR SER ILE LYS ILE PRO SEQRES 9 Y 171 SER SER HIS ASN LEU MET LYS GLY GLY SER THR LYS ASN SEQRES 10 Y 171 TRP SER GLY ASN SER GLU PHE HIS PHE TYR SER ILE ASN SEQRES 11 Y 171 VAL GLY GLY PHE PHE LYS LEU ARG ALA GLY GLU GLU ILE SEQRES 12 Y 171 SER ILE GLN VAL SER ASN PRO SER LEU LEU ASP PRO ASP SEQRES 13 Y 171 GLN ASP ALA THR TYR PHE GLY ALA PHE LYS VAL GLN ASP SEQRES 14 Y 171 ILE ASP SEQRES 1 Z 171 GLY PRO LEU GLY SER PRO GLU PHE PRO ARG ARG GLY LYS SEQRES 2 Z 171 PRO GLU ALA GLN PRO PHE ALA HIS LEU THR ILE ASN ALA SEQRES 3 Z 171 ALA SER ILE PRO SER GLY SER HIS LYS VAL THR LEU SER SEQRES 4 Z 171 SER TRP TYR HIS ASP ARG GLY TRP ALA LYS ILE SER ASN SEQRES 5 Z 171 MET THR LEU SER ASN GLY LYS LEU ARG VAL ASN GLN ASP SEQRES 6 Z 171 GLY PHE TYR TYR LEU TYR ALA ASN ILE CYS PHE ARG HIS SEQRES 7 Z 171 HIS GLU THR SER GLY SER VAL PRO THR ASP TYR LEU GLN SEQRES 8 Z 171 LEU MET VAL TYR VAL VAL LYS THR SER ILE LYS ILE PRO SEQRES 9 Z 171 SER SER HIS ASN LEU MET LYS GLY GLY SER THR LYS ASN SEQRES 10 Z 171 TRP SER GLY ASN SER GLU PHE HIS PHE TYR SER ILE ASN SEQRES 11 Z 171 VAL GLY GLY PHE PHE LYS LEU ARG ALA GLY GLU GLU ILE SEQRES 12 Z 171 SER ILE GLN VAL SER ASN PRO SER LEU LEU ASP PRO ASP SEQRES 13 Z 171 GLN ASP ALA THR TYR PHE GLY ALA PHE LYS VAL GLN ASP SEQRES 14 Z 171 ILE ASP FORMUL 4 HOH *147(H2 O) HELIX 1 1 THR X 226 GLY X 228 5 3 HELIX 2 2 ASN X 294 LEU X 298 5 5 HELIX 3 3 THR Y 226 GLY Y 228 5 3 HELIX 4 4 ASN Y 294 LEU Y 298 5 5 HELIX 5 5 THR Z 226 GLY Z 228 5 3 HELIX 6 6 ASN Z 294 LEU Z 298 5 5 SHEET 1 A 5 PHE X 269 LEU X 282 0 SHEET 2 A 5 GLY X 211 HIS X 224 -1 N TYR X 213 O PHE X 280 SHEET 3 A 5 TYR X 306 GLN X 313 -1 O TYR X 306 N ASN X 218 SHEET 4 A 5 PHE X 164 ILE X 169 -1 N ALA X 165 O ALA X 309 SHEET 5 A 5 TRP X 186 TYR X 187 0 SHEET 1 B 5 PHE X 269 LEU X 282 0 SHEET 2 B 5 GLY X 211 HIS X 224 -1 N TYR X 213 O PHE X 280 SHEET 3 B 5 TYR X 306 GLN X 313 -1 O TYR X 306 N ASN X 218 SHEET 4 B 5 PHE X 164 ILE X 169 -1 N ALA X 165 O ALA X 309 SHEET 5 B 5 LYS X 194 SER X 196 0 SHEET 1 C 4 SER X 251 ASN X 262 0 SHEET 2 C 4 TYR X 234 SER X 245 -1 N LYS X 243 O HIS X 252 SHEET 3 C 4 GLU X 286 VAL X 292 -1 O GLN X 291 N TYR X 240 SHEET 4 C 4 VAL X 181 LEU X 183 0 SHEET 1 D 5 SER X 251 ASN X 262 0 SHEET 2 D 5 TYR X 234 SER X 245 -1 N LYS X 243 O HIS X 252 SHEET 3 D 5 GLU X 286 VAL X 292 -1 O GLN X 291 N TYR X 240 SHEET 4 D 5 LEU X 205 ARG X 206 0 SHEET 5 D 5 THR X 199 LEU X 200 -1 N THR X 199 O ARG X 206 SHEET 1 E 5 LYS Y 194 SER Y 196 0 SHEET 2 E 5 PHE Y 164 THR Y 168 -1 N PHE Y 164 O SER Y 196 SHEET 3 E 5 TYR Y 306 ASP Y 314 -1 O PHE Y 307 N LEU Y 167 SHEET 4 E 5 GLY Y 211 HIS Y 224 -1 N PHE Y 212 O VAL Y 312 SHEET 5 E 5 PHE Y 269 LEU Y 282 -1 O HIS Y 270 N HIS Y 223 SHEET 1 F 4 SER Y 251 ASN Y 262 0 SHEET 2 F 4 TYR Y 234 THR Y 244 -1 N VAL Y 241 O LEU Y 254 SHEET 3 F 4 GLU Y 287 VAL Y 292 -1 O SER Y 289 N VAL Y 242 SHEET 4 F 4 VAL Y 181 LEU Y 183 0 SHEET 1 G 5 SER Y 251 ASN Y 262 0 SHEET 2 G 5 TYR Y 234 THR Y 244 -1 N VAL Y 241 O LEU Y 254 SHEET 3 G 5 GLU Y 287 VAL Y 292 -1 O SER Y 289 N VAL Y 242 SHEET 4 G 5 LYS Y 204 ARG Y 206 0 SHEET 5 G 5 THR Y 199 LEU Y 200 -1 N THR Y 199 O ARG Y 206 SHEET 1 H 5 PHE Z 269 LEU Z 282 0 SHEET 2 H 5 GLY Z 211 HIS Z 224 -1 N TYR Z 213 O PHE Z 280 SHEET 3 H 5 TYR Z 306 GLN Z 313 -1 O TYR Z 306 N ASN Z 218 SHEET 4 H 5 PHE Z 164 ILE Z 169 -1 N ALA Z 165 O ALA Z 309 SHEET 5 H 5 TRP Z 186 TYR Z 187 0 SHEET 1 I 5 PHE Z 269 LEU Z 282 0 SHEET 2 I 5 GLY Z 211 HIS Z 224 -1 N TYR Z 213 O PHE Z 280 SHEET 3 I 5 TYR Z 306 GLN Z 313 -1 O TYR Z 306 N ASN Z 218 SHEET 4 I 5 PHE Z 164 ILE Z 169 -1 N ALA Z 165 O ALA Z 309 SHEET 5 I 5 LYS Z 194 SER Z 196 0 SHEET 1 J 4 SER Z 251 ASN Z 262 0 SHEET 2 J 4 TYR Z 234 THR Z 244 -1 N LYS Z 243 O HIS Z 252 SHEET 3 J 4 GLU Z 287 VAL Z 292 -1 O GLN Z 291 N TYR Z 240 SHEET 4 J 4 VAL Z 181 LEU Z 183 0 SHEET 1 K 5 SER Z 251 ASN Z 262 0 SHEET 2 K 5 TYR Z 234 THR Z 244 -1 N LYS Z 243 O HIS Z 252 SHEET 3 K 5 GLU Z 287 VAL Z 292 -1 O GLN Z 291 N TYR Z 240 SHEET 4 K 5 LEU Z 205 ARG Z 206 0 SHEET 5 K 5 THR Z 199 LEU Z 200 -1 N THR Z 199 O ARG Z 206 CRYST1 65.300 82.000 99.500 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015314 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010050 0.00000