HEADER OXIDOREDUCTASE 29-AUG-01 1JVB TITLE ALCOHOL DEHYDROGENASE FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(H)-DEPENDENT ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: APO-ENZYME FORM; COMPND 5 EC: 1.1.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: APO-ENZYME FORM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: ADH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RB791; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PTRC99A KEYWDS ARCHAEON, ZINC, NAD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.ESPOSITO,F.SICA,A.ZAGARI,L.MAZZARELLA REVDAT 4 13-NOV-24 1JVB 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1JVB 1 VERSN REVDAT 2 01-APR-03 1JVB 1 JRNL REVDAT 1 29-AUG-02 1JVB 0 JRNL AUTH L.ESPOSITO,F.SICA,C.A.RAIA,A.GIORDANO,M.ROSSI,L.MAZZARELLA, JRNL AUTH 2 A.ZAGARI JRNL TITL CRYSTAL STRUCTURE OF THE ALCOHOL DEHYDROGENASE FROM THE JRNL TITL 2 HYPERTHERMOPHILIC ARCHAEON SULFOLOBUS SOLFATARICUS AT 1.85 A JRNL TITL 3 RESOLUTION. JRNL REF J.MOL.BIOL. V. 318 463 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12051852 JRNL DOI 10.1016/S0022-2836(02)00088-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.KORKHIN,A.J.KALB,M.PERETZ,O.BOGIN,Y.BURSTEIN,F.FROLOW REMARK 1 TITL NADP-DEPENDENT BACTERIAL ALCOHOL DEHYDROGENASES: CRYSTAL REMARK 1 TITL 2 STRUCTURE, CO-FACTOR-BINDING AND CO-FACTOR SPECIFICITY OF REMARK 1 TITL 3 THE ADHS OF CLOSTRIDIUM BEIJERINCKII AND THERMOANAEROBACTER REMARK 1 TITL 4 BROCKII REMARK 1 REF J.MOL.BIOL. V. 278 967 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1998.1750 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.EKLUND,B.NORDSTROM,E.ZEPPEZAUER,G.SODERLUND,I.OHLSSON, REMARK 1 AUTH 2 T.BOIWE,B.O.SODERBERG,O.TAPIA,C.I.BRANDEN,A.AKESON REMARK 1 TITL THREE DIMENSIONAL STRUCTURE OF HORSE LIVER REMARK 1 TITL 2 ALCOHOLDEHYDROGENASE AT 2.4 ANGSTROM RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 102 27 1976 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.J.BANFIELD,M.E.SALVUCCI,E.N.BAKER,C.A.SMITH REMARK 1 TITL CRYSTAL STRUCTURE OF NADP(H)-DEPENDENT KETOSE REDUCTASE FROM REMARK 1 TITL 2 BESIMIA ARGENTIFOLII AT 2.3 ANGSTROM RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 306 239 2001 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2000.4381 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 38129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3816 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2013 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 215 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.260 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.420 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.250 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.280 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 44.61 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9830, 0.9795, 0.9792, 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39211 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% (V/V) PEG 4000, 6% (V/V) REMARK 280 ISOPROPANOL, 50MM SODIUM CITRATE PH 5.6, 50MM TRIS PH 7.8, PH REMARK 280 6.3, BATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.65800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 62.65800 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.79500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.65800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.89750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.65800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.69250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.65800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.69250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.65800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.89750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 62.65800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 62.65800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.79500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.65800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.65800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.79500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.65800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 86.69250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.65800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 28.89750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.65800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 28.89750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.65800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 86.69250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.65800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.65800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 57.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y,-X,-Z, Y,X,-Z, REMARK 300 -X,-Y,Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 ARG A 48 CD NE CZ NH1 NH2 REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 206 CB CG CD OE1 OE2 REMARK 470 ARG A 307 NE CZ NH1 NH2 REMARK 470 ILE A 340 CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 108 60.70 -115.85 REMARK 500 ARG A 142 -57.50 -120.68 REMARK 500 CYS A 154 -62.71 -128.70 REMARK 500 SER A 238 -4.13 77.61 REMARK 500 ASN A 248 -51.17 -120.38 REMARK 500 VAL A 296 -122.12 31.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 126 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 HIS A 68 NE2 99.8 REMARK 620 3 GLU A 69 OE2 104.7 118.0 REMARK 620 4 CYS A 154 SG 121.5 106.6 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 98 OE2 REMARK 620 2 CYS A 101 SG 102.6 REMARK 620 3 CYS A 104 SG 110.7 112.6 REMARK 620 4 CYS A 112 SG 105.8 119.9 104.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZNS REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES THAT BIND THE CATALYTIC ZINC ION (ZN A REMARK 800 500) REMARK 800 REMARK 800 SITE_IDENTIFIER: ZNC REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES THAT BIND A STRUCTURAL ZINC ION (ZN A REMARK 800 400) IN THE CATALYTIC DOMAIN REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 DBREF 1JVB A 1 347 UNP P39462 ADH_SULSO 1 347 SEQADV 1JVB MSE A 1 UNP P39462 MET 1 MODIFIED RESIDUE SEQADV 1JVB MSE A 44 UNP P39462 MET 44 MODIFIED RESIDUE SEQADV 1JVB MSE A 138 UNP P39462 MET 138 MODIFIED RESIDUE SEQADV 1JVB MSE A 186 UNP P39462 MET 186 MODIFIED RESIDUE SEQADV 1JVB MSE A 269 UNP P39462 MET 269 MODIFIED RESIDUE SEQADV 1JVB MSE A 306 UNP P39462 MET 306 MODIFIED RESIDUE SEQADV 1JVB MSE A 317 UNP P39462 MET 317 MODIFIED RESIDUE SEQADV 1JVB MSE A 322 UNP P39462 MET 322 MODIFIED RESIDUE SEQRES 1 A 347 MSE ARG ALA VAL ARG LEU VAL GLU ILE GLY LYS PRO LEU SEQRES 2 A 347 SER LEU GLN GLU ILE GLY VAL PRO LYS PRO LYS GLY PRO SEQRES 3 A 347 GLN VAL LEU ILE LYS VAL GLU ALA ALA GLY VAL CYS HIS SEQRES 4 A 347 SER ASP VAL HIS MSE ARG GLN GLY ARG PHE GLY ASN LEU SEQRES 5 A 347 ARG ILE VAL GLU ASP LEU GLY VAL LYS LEU PRO VAL THR SEQRES 6 A 347 LEU GLY HIS GLU ILE ALA GLY LYS ILE GLU GLU VAL GLY SEQRES 7 A 347 ASP GLU VAL VAL GLY TYR SER LYS GLY ASP LEU VAL ALA SEQRES 8 A 347 VAL ASN PRO TRP GLN GLY GLU GLY ASN CYS TYR TYR CYS SEQRES 9 A 347 ARG ILE GLY GLU GLU HIS LEU CYS ASP SER PRO ARG TRP SEQRES 10 A 347 LEU GLY ILE ASN PHE ASP GLY ALA TYR ALA GLU TYR VAL SEQRES 11 A 347 ILE VAL PRO HIS TYR LYS TYR MSE TYR LYS LEU ARG ARG SEQRES 12 A 347 LEU ASN ALA VAL GLU ALA ALA PRO LEU THR CYS SER GLY SEQRES 13 A 347 ILE THR THR TYR ARG ALA VAL ARG LYS ALA SER LEU ASP SEQRES 14 A 347 PRO THR LYS THR LEU LEU VAL VAL GLY ALA GLY GLY GLY SEQRES 15 A 347 LEU GLY THR MSE ALA VAL GLN ILE ALA LYS ALA VAL SER SEQRES 16 A 347 GLY ALA THR ILE ILE GLY VAL ASP VAL ARG GLU GLU ALA SEQRES 17 A 347 VAL GLU ALA ALA LYS ARG ALA GLY ALA ASP TYR VAL ILE SEQRES 18 A 347 ASN ALA SER MET GLN ASP PRO LEU ALA GLU ILE ARG ARG SEQRES 19 A 347 ILE THR GLU SER LYS GLY VAL ASP ALA VAL ILE ASP LEU SEQRES 20 A 347 ASN ASN SER GLU LYS THR LEU SER VAL TYR PRO LYS ALA SEQRES 21 A 347 LEU ALA LYS GLN GLY LYS TYR VAL MSE VAL GLY LEU PHE SEQRES 22 A 347 GLY ALA ASP LEU HIS TYR HIS ALA PRO LEU ILE THR LEU SEQRES 23 A 347 SER GLU ILE GLN PHE VAL GLY SER LEU VAL GLY ASN GLN SEQRES 24 A 347 SER ASP PHE LEU GLY ILE MSE ARG LEU ALA GLU ALA GLY SEQRES 25 A 347 LYS VAL LYS PRO MSE ILE THR LYS THR MSE LYS LEU GLU SEQRES 26 A 347 GLU ALA ASN GLU ALA ILE ASP ASN LEU GLU ASN PHE LYS SEQRES 27 A 347 ALA ILE GLY ARG GLN VAL LEU ILE PRO MODRES 1JVB MSE A 1 MET SELENOMETHIONINE MODRES 1JVB MSE A 44 MET SELENOMETHIONINE MODRES 1JVB MSE A 138 MET SELENOMETHIONINE MODRES 1JVB MSE A 186 MET SELENOMETHIONINE MODRES 1JVB MSE A 269 MET SELENOMETHIONINE MODRES 1JVB MSE A 306 MET SELENOMETHIONINE MODRES 1JVB MSE A 317 MET SELENOMETHIONINE MODRES 1JVB MSE A 322 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 44 10 HET MSE A 138 8 HET MSE A 186 8 HET MSE A 269 8 HET MSE A 306 8 HET MSE A 317 8 HET MSE A 322 8 HET ZN A 400 1 HET ZN A 500 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *193(H2 O) HELIX 1 1 HIS A 39 ARG A 45 1 7 HELIX 2 2 CYS A 101 ILE A 106 1 6 HELIX 3 3 GLU A 108 CYS A 112 5 5 HELIX 4 4 HIS A 134 LYS A 136 5 3 HELIX 5 5 ASN A 145 ALA A 150 1 6 HELIX 6 6 PRO A 151 THR A 153 5 3 HELIX 7 7 CYS A 154 ALA A 166 1 13 HELIX 8 8 GLY A 181 SER A 195 1 15 HELIX 9 9 ARG A 205 GLY A 216 1 12 HELIX 10 10 ASP A 227 THR A 236 1 10 HELIX 11 11 SER A 250 SER A 255 1 6 HELIX 12 12 VAL A 256 LYS A 259 5 4 HELIX 13 13 HIS A 280 GLU A 288 1 9 HELIX 14 14 ASN A 298 ALA A 311 1 14 HELIX 15 15 GLU A 326 ASN A 336 1 11 SHEET 1 A 3 SER A 14 GLU A 17 0 SHEET 2 A 3 ARG A 2 LEU A 6 -1 N ARG A 5 O SER A 14 SHEET 3 A 3 VAL A 64 THR A 65 -1 O VAL A 64 N LEU A 6 SHEET 1 B 5 MSE A 138 LYS A 140 0 SHEET 2 B 5 LEU A 89 VAL A 92 -1 N ALA A 91 O TYR A 139 SHEET 3 B 5 GLU A 69 VAL A 77 -1 N GLY A 72 O VAL A 90 SHEET 4 B 5 VAL A 28 VAL A 37 -1 N LYS A 31 O LYS A 73 SHEET 5 B 5 TYR A 129 VAL A 132 -1 O VAL A 132 N VAL A 28 SHEET 1 C 6 MSE A 138 LYS A 140 0 SHEET 2 C 6 LEU A 89 VAL A 92 -1 N ALA A 91 O TYR A 139 SHEET 3 C 6 GLU A 69 VAL A 77 -1 N GLY A 72 O VAL A 90 SHEET 4 C 6 VAL A 28 VAL A 37 -1 N LYS A 31 O LYS A 73 SHEET 5 C 6 ARG A 342 ILE A 346 -1 O LEU A 345 N ALA A 35 SHEET 6 C 6 THR A 319 LYS A 323 1 N MSE A 322 O ILE A 346 SHEET 1 D 2 ARG A 48 PHE A 49 0 SHEET 2 D 2 LEU A 52 ARG A 53 -1 O LEU A 52 N PHE A 49 SHEET 1 E 2 TRP A 95 GLN A 96 0 SHEET 2 E 2 ARG A 116 TRP A 117 -1 O ARG A 116 N GLN A 96 SHEET 1 F 6 TYR A 219 ASN A 222 0 SHEET 2 F 6 THR A 198 ASP A 203 1 N GLY A 201 O TYR A 219 SHEET 3 F 6 THR A 173 VAL A 177 1 N LEU A 174 O ILE A 200 SHEET 4 F 6 VAL A 241 ASP A 246 1 O ILE A 245 N LEU A 175 SHEET 5 F 6 LEU A 261 MSE A 269 1 O VAL A 268 N VAL A 244 SHEET 6 F 6 GLN A 290 GLY A 293 1 O GLN A 290 N TYR A 267 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C HIS A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N ARG A 45 1555 1555 1.34 LINK C TYR A 137 N MSE A 138 1555 1555 1.32 LINK C MSE A 138 N TYR A 139 1555 1555 1.33 LINK C THR A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N ALA A 187 1555 1555 1.33 LINK C VAL A 268 N MSE A 269 1555 1555 1.33 LINK C MSE A 269 N VAL A 270 1555 1555 1.32 LINK C ILE A 305 N MSE A 306 1555 1555 1.33 LINK C MSE A 306 N ARG A 307 1555 1555 1.34 LINK C PRO A 316 N MSE A 317 1555 1555 1.33 LINK C MSE A 317 N ILE A 318 1555 1555 1.33 LINK C THR A 321 N MSE A 322 1555 1555 1.33 LINK C MSE A 322 N LYS A 323 1555 1555 1.33 LINK SG CYS A 38 ZN ZN A 500 1555 1555 2.34 LINK NE2 HIS A 68 ZN ZN A 500 1555 1555 2.05 LINK OE2 GLU A 69 ZN ZN A 500 1555 1555 2.01 LINK OE2 GLU A 98 ZN ZN A 400 1555 1555 2.04 LINK SG CYS A 101 ZN ZN A 400 1555 1555 2.29 LINK SG CYS A 104 ZN ZN A 400 1555 1555 2.24 LINK SG CYS A 112 ZN ZN A 400 1555 1555 2.33 LINK SG CYS A 154 ZN ZN A 500 1555 1555 2.31 CISPEP 1 LEU A 62 PRO A 63 0 -0.41 SITE 1 ZNS 4 CYS A 112 GLU A 98 CYS A 101 CYS A 104 SITE 1 ZNC 4 CYS A 38 CYS A 154 GLU A 69 HIS A 68 SITE 1 AC1 4 GLU A 98 CYS A 101 CYS A 104 CYS A 112 SITE 1 AC2 4 CYS A 38 HIS A 68 GLU A 69 CYS A 154 CRYST1 125.316 125.316 115.590 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008651 0.00000 HETATM 1 N MSE A 1 -40.463 -20.409 18.784 1.00 33.82 N HETATM 2 CA MSE A 1 -39.544 -19.564 19.598 1.00 32.02 C HETATM 3 C MSE A 1 -40.016 -18.128 19.600 1.00 30.27 C HETATM 4 O MSE A 1 -40.729 -17.742 18.698 1.00 30.49 O HETATM 5 CB MSE A 1 -38.154 -19.551 18.953 1.00 32.81 C HETATM 6 CG MSE A 1 -38.109 -18.705 17.686 1.00 31.51 C HETATM 7 SE MSE A 1 -36.201 -18.655 17.007 1.00 36.95 SE HETATM 8 CE MSE A 1 -36.461 -17.590 15.390 1.00 33.33 C