HEADER DNA 29-AUG-01 1JVE TITLE NMR STRUCTURE OF AN AT-RICH DNA WITH THE GAA-HAIRPIN LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: AT-RICH DNA WITH THE GAA-HAIRPIN LOOP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: DESIGNED AT-RICH SEQUENCE KEYWDS DEOXYRIBONUCLEIC ACID, DNA OLIGONUCLEOTIDE, STEM-AND-LOOP, AT-RICH, KEYWDS 2 GAA HAIRPIN LOOP, PRIBNOW BOX, DNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR N.B.ULYANOV,W.R.BAUER,T.L.JAMES REVDAT 3 23-FEB-22 1JVE 1 REMARK REVDAT 2 24-FEB-09 1JVE 1 VERSN REVDAT 1 22-MAY-02 1JVE 0 JRNL AUTH N.B.ULYANOV,W.R.BAUER,T.L.JAMES JRNL TITL HIGH-RESOLUTION NMR STRUCTURE OF AN AT-RICH DNA SEQUENCE. JRNL REF J.BIOMOL.NMR V. 22 265 2002 JRNL REFN ISSN 0925-2738 JRNL PMID 11991355 JRNL DOI 10.1023/A:1014987532546 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1, DYANA 1.5, MINICARLO ALPHA VERSION REMARK 3 AUTHORS : VARIAN ASSOCIATES, INC. (VNMR), GUNTERT, P. REMARK 3 (DYANA), ULYANOV, N.B., GORLER, A., GORIN, A.A., REMARK 3 ZHURKIN, V.B. (MINICARLO) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE NMR REFINEMENT WAS BASED ON A TOTAL OF 434 INTERPROTON DISTANCE REMARK 3 RESTRAINTS (16.1 PER RESIDUE). REMARK 3 THE RESTRAINTS INCLUDE 353 MARDIGRAS-DERIVED REMARK 3 QUANTITATIVE RESTRAINTS FOR NONEXCHANGEABLE REMARK 3 PROTONS (WITH AN AVERAGE FLAT-WELL REMARK 3 WIDTH OF 1.51 ANGSTROMS), 63 REMARK 3 QUALITATIVE RESTRAINTS FOR EXCHANGEABLE REMARK 3 PROTONS, AND 18 H-BOND RESTRAINTS REMARK 3 FOR WATSON-CRICK GC PAIRS. REMARK 4 REMARK 4 1JVE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014227. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 30 MM K+ REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM DNA; PHOSPHATE BUFFER: 30 MM REMARK 210 K+; 1MM EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D-NOESY; DQF-COSY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.8, SPARKY 3.1, REMARK 210 MARDIGRAS 3.2 REMARK 210 METHOD USED : FULL MATRIX RELAXATION ANALYSIS REMARK 210 OF NOE, RANDOM ERROR ANALYSIS OF REMARK 210 NOE, SIMULATED ANNEALING USING REMARK 210 TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING USING REMARK 210 METROPOLIS MONTE CARLO, REMARK 210 RESTRAINED MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION (A REMARK 210 WEIGHTED SUM OF CONFORMATIONAL REMARK 210 ENERGY AND RESTRAINT ENERGY). REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 1JVE A 1 27 PDB 1JVE 1JVE 1 27 SEQRES 1 A 27 DC DC DT DA DA DT DT DA DT DA DA DC DG SEQRES 2 A 27 DA DA DG DT DT DA DT DA DA DT DT DA DG SEQRES 3 A 27 DG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1