HEADER LIGASE 03-SEP-01 1JW9 TITLE STRUCTURE OF THE NATIVE MOEB-MOAD PROTEIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MOLYBDOPTERIN [MPT] CONVERTING FACTOR, SUBUNIT 1; COMPND 7 CHAIN: D; COMPND 8 SYNONYM: MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MOEB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 GENE: MOAD; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MOEB: MODIFIED ROSSMANN FOLD; (2) CYS-X-X-CYS ZINC-BINDING MOTIFS; KEYWDS 2 MOAD: UBIQUITIN-LIKE FOLD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.LAKE,M.M.WUEBBENS,K.V.RAJAGOPALAN,H.SCHINDELIN REVDAT 4 07-FEB-24 1JW9 1 REMARK REVDAT 3 13-JUL-11 1JW9 1 VERSN REVDAT 2 24-FEB-09 1JW9 1 VERSN REVDAT 1 21-NOV-01 1JW9 0 JRNL AUTH M.W.LAKE,M.M.WUEBBENS,K.V.RAJAGOPALAN,H.SCHINDELIN JRNL TITL MECHANISM OF UBIQUITIN ACTIVATION REVEALED BY THE STRUCTURE JRNL TITL 2 OF A BACTERIAL MOEB-MOAD COMPLEX. JRNL REF NATURE V. 414 325 2001 JRNL REFN ISSN 0028-0836 JRNL PMID 11713534 JRNL DOI 10.1038/35104586 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 36267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1514 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2407 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.021 ; 0.021 REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.213 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.581 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.218 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.396 ; 4.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37865 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.06950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.91600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.91600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.53475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.91600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.91600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.60425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.91600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.91600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.53475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.91600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.91600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.60425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.06950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A HETERODIMER COMPRISED OF (1) REMARK 300 MOLECULE OF MOEB AND (1) MOLECULE OF MOAD. THE HETEROTETRAMER IS REMARK 300 GENERATED BY APPLYING: -Y+1,-X+1,1/2-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 77.83200 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 77.83200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.06950 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLU B 182 REMARK 465 ASN B 183 REMARK 465 ALA B 184 REMARK 465 LEU B 185 REMARK 465 THR B 186 REMARK 465 CYS B 187 REMARK 465 VAL B 188 REMARK 465 GLN B 249 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 189 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 322 O HOH B 409 1.46 REMARK 500 O HOH B 313 O HOH B 416 1.74 REMARK 500 N GLY B 20 O HOH B 408 1.86 REMARK 500 O2 SO4 B 252 O HOH B 378 1.90 REMARK 500 O HOH B 330 O HOH B 378 1.92 REMARK 500 O HOH B 414 O HOH B 415 1.94 REMARK 500 OD1 ASP B 127 NH1 ARG B 135 1.95 REMARK 500 O HOH D 98 O HOH D 116 2.15 REMARK 500 ND2 ASN B 70 O2 SO4 B 252 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 413 O HOH B 413 8665 0.82 REMARK 500 O HOH B 346 O HOH B 417 6555 1.74 REMARK 500 O HOH B 304 O HOH B 417 6555 2.08 REMARK 500 O4 SO4 B 251 O HOH B 370 8665 2.18 REMARK 500 O HOH B 405 O HOH D 93 8665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 9 CG MET B 9 SD 0.157 REMARK 500 GLN B 48 CB GLN B 48 CG -0.163 REMARK 500 ARG B 135 CG ARG B 135 CD 0.164 REMARK 500 GLY D 80 C GLY D 80 O -0.239 REMARK 500 GLY D 80 C GLY D 81 N -0.140 REMARK 500 GLY D 81 N GLY D 81 CA -0.174 REMARK 500 GLY D 81 CA GLY D 81 C -0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 234 CG - CD - NE ANGL. DEV. = 13.0 DEGREES REMARK 500 GLY D 80 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 GLY D 81 C - N - CA ANGL. DEV. = -21.6 DEGREES REMARK 500 GLY D 81 N - CA - C ANGL. DEV. = -27.2 DEGREES REMARK 500 GLY D 81 CA - C - O ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 21 -69.21 -101.51 REMARK 500 ASP B 22 -176.01 68.25 REMARK 500 ARG B 73 -4.57 -143.50 REMARK 500 ARG B 156 -111.60 50.71 REMARK 500 ALA D 8 -133.70 54.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY D 80 GLY D 81 39.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY D 80 -11.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 250 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 172 SG REMARK 620 2 CYS B 175 SG 123.4 REMARK 620 3 CYS B 244 SG 102.8 112.5 REMARK 620 4 CYS B 247 SG 114.0 94.0 110.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 82 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FMO RELATED DB: PDB REMARK 900 STRUCTURE OF MOLYBDOPTERIN SYNTHASE (MOAD IN COMPLEX WITH MOAE) REMARK 900 RELATED ID: 1JWA RELATED DB: PDB REMARK 900 STRUCTURE OF THE ATP-BOUND MOEB-MOAD PROTEIN COMPLEX REMARK 900 RELATED ID: 1JWB RELATED DB: PDB REMARK 900 STRUCTURE OF THE COVALENT ACYL-ADENYLATE FORM OF THE MOEB-MOAD REMARK 900 PROTEIN COMPLEX DBREF 1JW9 B 1 249 UNP P12282 MOEB_ECOLI 1 249 DBREF 1JW9 D 1 81 UNP P30748 MOAD_ECOLI 1 81 SEQRES 1 B 249 MET ALA GLU LEU SER ASP GLN GLU MET LEU ARG TYR ASN SEQRES 2 B 249 ARG GLN ILE ILE LEU ARG GLY PHE ASP PHE ASP GLY GLN SEQRES 3 B 249 GLU ALA LEU LYS ASP SER ARG VAL LEU ILE VAL GLY LEU SEQRES 4 B 249 GLY GLY LEU GLY CYS ALA ALA SER GLN TYR LEU ALA SER SEQRES 5 B 249 ALA GLY VAL GLY ASN LEU THR LEU LEU ASP PHE ASP THR SEQRES 6 B 249 VAL SER LEU SER ASN LEU GLN ARG GLN THR LEU HIS SER SEQRES 7 B 249 ASP ALA THR VAL GLY GLN PRO LYS VAL GLU SER ALA ARG SEQRES 8 B 249 ASP ALA LEU THR ARG ILE ASN PRO HIS ILE ALA ILE THR SEQRES 9 B 249 PRO VAL ASN ALA LEU LEU ASP ASP ALA GLU LEU ALA ALA SEQRES 10 B 249 LEU ILE ALA GLU HIS ASP LEU VAL LEU ASP CYS THR ASP SEQRES 11 B 249 ASN VAL ALA VAL ARG ASN GLN LEU ASN ALA GLY CYS PHE SEQRES 12 B 249 ALA ALA LYS VAL PRO LEU VAL SER GLY ALA ALA ILE ARG SEQRES 13 B 249 MET GLU GLY GLN ILE THR VAL PHE THR TYR GLN ASP GLY SEQRES 14 B 249 GLU PRO CYS TYR ARG CYS LEU SER ARG LEU PHE GLY GLU SEQRES 15 B 249 ASN ALA LEU THR CYS VAL GLU ALA GLY VAL MET ALA PRO SEQRES 16 B 249 LEU ILE GLY VAL ILE GLY SER LEU GLN ALA MET GLU ALA SEQRES 17 B 249 ILE LYS MET LEU ALA GLY TYR GLY LYS PRO ALA SER GLY SEQRES 18 B 249 LYS ILE VAL MET TYR ASP ALA MET THR CYS GLN PHE ARG SEQRES 19 B 249 GLU MET LYS LEU MET ARG ASN PRO GLY CYS GLU VAL CYS SEQRES 20 B 249 GLY GLN SEQRES 1 D 81 MET ILE LYS VAL LEU PHE PHE ALA GLN VAL ARG GLU LEU SEQRES 2 D 81 VAL GLY THR ASP ALA THR GLU VAL ALA ALA ASP PHE PRO SEQRES 3 D 81 THR VAL GLU ALA LEU ARG GLN HIS MET ALA ALA GLN SER SEQRES 4 D 81 ASP ARG TRP ALA LEU ALA LEU GLU ASP GLY LYS LEU LEU SEQRES 5 D 81 ALA ALA VAL ASN GLN THR LEU VAL SER PHE ASP HIS PRO SEQRES 6 D 81 LEU THR ASP GLY ASP GLU VAL ALA PHE PHE PRO PRO VAL SEQRES 7 D 81 THR GLY GLY HET ZN B 250 1 HET SO4 B 251 5 HET SO4 B 252 5 HET SO4 D 82 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 ZN ZN 2+ FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *215(H2 O) HELIX 1 1 SER B 5 TYR B 12 1 8 HELIX 2 2 TYR B 12 ILE B 17 1 6 HELIX 3 3 PHE B 21 SER B 32 1 12 HELIX 4 4 GLY B 40 GLY B 54 1 15 HELIX 5 5 SER B 67 ARG B 73 5 7 HELIX 6 6 SER B 78 VAL B 82 5 5 HELIX 7 7 PRO B 85 ASN B 98 1 14 HELIX 8 8 ASP B 111 GLU B 121 1 11 HELIX 9 9 ASN B 131 LYS B 146 1 16 HELIX 10 10 CYS B 172 ARG B 178 1 7 HELIX 11 11 MET B 193 GLY B 214 1 22 HELIX 12 12 PHE D 7 GLY D 15 1 9 HELIX 13 13 THR D 27 ALA D 37 1 11 HELIX 14 14 SER D 39 LEU D 46 1 8 SHEET 1 A 8 ALA B 102 VAL B 106 0 SHEET 2 A 8 ASN B 57 LEU B 61 1 N LEU B 60 O VAL B 106 SHEET 3 A 8 ARG B 33 VAL B 37 1 N ILE B 36 O THR B 59 SHEET 4 A 8 LEU B 124 ASP B 127 1 O LEU B 126 N LEU B 35 SHEET 5 A 8 LEU B 149 ILE B 155 1 O VAL B 150 N VAL B 125 SHEET 6 A 8 GLU B 158 PHE B 164 -1 O GLU B 158 N ILE B 155 SHEET 7 A 8 LYS B 222 ASP B 227 -1 O VAL B 224 N ILE B 161 SHEET 8 A 8 GLN B 232 LYS B 237 -1 O GLN B 232 N ASP B 227 SHEET 1 B 5 ALA D 18 VAL D 21 0 SHEET 2 B 5 ILE D 2 PHE D 6 -1 N ILE D 2 O VAL D 21 SHEET 3 B 5 GLU D 71 PHE D 75 1 O VAL D 72 N LEU D 5 SHEET 4 B 5 LEU D 52 VAL D 55 -1 N ALA D 54 O ALA D 73 SHEET 5 B 5 THR D 58 LEU D 59 -1 O THR D 58 N VAL D 55 LINK SG CYS B 172 ZN ZN B 250 1555 1555 2.35 LINK SG CYS B 175 ZN ZN B 250 1555 1555 2.41 LINK SG CYS B 244 ZN ZN B 250 1555 1555 2.36 LINK SG CYS B 247 ZN ZN B 250 1555 1555 2.22 SITE 1 AC1 4 CYS B 172 CYS B 175 CYS B 244 CYS B 247 SITE 1 AC2 8 GLY B 41 LEU B 42 ARG B 73 GLN B 74 SITE 2 AC2 8 ILE B 197 HOH B 257 GLY D 81 HOH D 83 SITE 1 AC3 5 ARG B 19 ARG B 156 HOH B 272 HOH B 370 SITE 2 AC3 5 GLN D 9 SITE 1 AC4 7 ARG B 14 SER B 69 ASN B 70 ARG B 73 SITE 2 AC4 7 HOH B 330 HOH B 378 HOH B 383 CRYST1 77.832 77.832 102.139 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009791 0.00000