HEADER VIRAL PROTEIN COMPLEX 21-AUG-97 1JXP TITLE BK STRAIN HEPATITIS C VIRUS (HCV) NS3-NS4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 SERINE PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HYDROLASE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NS4A; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: STRUCTURAL PROTEIN NS4A; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: HEPATITIS C VIRUS PROTEINS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS (ISOLATE BK); SOURCE 3 ORGANISM_TAXID: 11105; SOURCE 4 STRAIN: BK STRAIN ISOLATE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS (ISOLATE BK); SOURCE 9 ORGANISM_TAXID: 11105; SOURCE 10 STRAIN: BK STRAIN ISOLATE; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX (VIRAL NONSTRUCTURAL PROTEINS), HYDROLASE, SERINE PROTEINASE, KEYWDS 2 VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.YAN,S.MUNSHI,Z.CHEN REVDAT 4 07-FEB-24 1JXP 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1JXP 1 VERSN REVDAT 2 24-FEB-09 1JXP 1 VERSN REVDAT 1 14-JAN-98 1JXP 0 JRNL AUTH Y.YAN,Y.LI,S.MUNSHI,V.SARDANA,J.L.COLE,M.SARDANA, JRNL AUTH 2 C.STEINKUEHLER,L.TOMEI,R.DE FRANCESCO,L.C.KUO,Z.CHEN JRNL TITL COMPLEX OF NS3 PROTEASE AND NS4A PEPTIDE OF BK STRAIN JRNL TITL 2 HEPATITIS C VIRUS: A 2.2 A RESOLUTION STRUCTURE IN A JRNL TITL 3 HEXAGONAL CRYSTAL FORM. JRNL REF PROTEIN SCI. V. 7 837 1998 JRNL REFN ISSN 0961-8368 JRNL PMID 9568891 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-96 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.55000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.55000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.55000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 83.55000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.55000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 83.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO NS3 PROTEASE-NS4A PEPTIDE COMPLEXES IN THE REMARK 300 ASYMMETRIC UNIT. THE TWO HCV NS3 PROTEASE MOLECULES IN REMARK 300 EACH COMPLEX ARE LABELED AS CHAIN A AND CHAIN B. THE TWO REMARK 300 NS4A PEPTIDES IN EACH COMPLEX ARE LABELED AS C AND D. REMARK 300 CHAIN A IS NUMBERED 1 - 186, CHAIN B IS NUMBERED 1 - 186, REMARK 300 CHAIN C IS NUMBERED 220 - 235 AND CHAIN D IS NUMBERED REMARK 300 220 - 235. THERE IS ONE ZINC ATOM IN EACH COMPLEX. ZINC REMARK 300 ATOMS ARE NUMBERED 190 AND 490. WATER MOLECULES ARE REMARK 300 NUMBERED 601 - 921. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 54120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -508.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 48.48000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 83.96982 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -48.48000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 83.96982 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 48.48000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 83.96982 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 83.55000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 83.55000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -48.48000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 83.96982 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 83.55000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 180 REMARK 465 ALA A 181 REMARK 465 SER A 182 REMARK 465 LYS A 183 REMARK 465 LYS A 184 REMARK 465 LYS A 185 REMARK 465 LYS A 186 REMARK 465 LYS C 220 REMARK 465 GLY C 233 REMARK 465 ARG C 234 REMARK 465 LYS C 235 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 ARG B 180 REMARK 465 ALA B 181 REMARK 465 SER B 182 REMARK 465 LYS B 183 REMARK 465 LYS B 184 REMARK 465 LYS B 185 REMARK 465 LYS B 186 REMARK 465 LYS D 220 REMARK 465 GLY D 233 REMARK 465 ARG D 234 REMARK 465 LYS D 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 16 O HOH A 890 2.15 REMARK 500 SG CYS A 16 O HOH A 727 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 16 CB CYS A 16 SG 0.102 REMARK 500 CYS A 97 CB CYS A 97 SG 0.129 REMARK 500 CYS B 16 CB CYS B 16 SG 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 96 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 PRO A 115 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 32 -60.38 -165.99 REMARK 500 THR A 38 -167.17 -117.05 REMARK 500 PHE A 43 -167.31 -168.08 REMARK 500 ASP A 81 47.67 36.17 REMARK 500 CYS A 97 -86.75 -97.13 REMARK 500 THR A 98 76.60 43.50 REMARK 500 CYS A 99 16.36 -148.84 REMARK 500 ARG A 119 51.39 -116.34 REMARK 500 SER A 122 20.44 -145.69 REMARK 500 PRO A 129 86.35 -45.08 REMARK 500 PRO A 146 -23.44 -30.05 REMARK 500 ARG A 161 66.31 30.49 REMARK 500 LYS B 26 30.37 -95.67 REMARK 500 THR B 40 -66.15 -107.42 REMARK 500 PHE B 43 -156.48 -130.83 REMARK 500 MET B 74 -70.67 -93.32 REMARK 500 ASN B 77 78.40 -110.99 REMARK 500 ALA B 91 93.19 7.14 REMARK 500 ARG B 92 98.38 -69.58 REMARK 500 PRO B 96 -170.78 -59.72 REMARK 500 CYS B 97 -86.66 -63.45 REMARK 500 THR B 98 103.20 64.30 REMARK 500 CYS B 99 -50.60 158.98 REMARK 500 SER B 101 132.29 -36.56 REMARK 500 ALA B 111 55.67 73.09 REMARK 500 ARG B 118 96.11 -48.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 190 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 99 SG 83.6 REMARK 620 3 CYS A 145 SG 102.1 124.9 REMARK 620 4 HOH A 653 O 107.7 102.3 126.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 490 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 97 O 82.8 REMARK 620 3 THR B 98 O 110.1 58.8 REMARK 620 4 CYS B 99 SG 132.9 128.8 73.1 REMARK 620 5 CYS B 145 SG 115.1 127.4 134.8 75.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 490 DBREF 1JXP A 1 180 UNP P26663 POLG_HCVBK 1026 1205 DBREF 1JXP C 221 234 UNP P26663 POLG_HCVBK 1677 1690 DBREF 1JXP B 1 180 UNP P26663 POLG_HCVBK 1026 1205 DBREF 1JXP D 221 234 UNP P26663 POLG_HCVBK 1677 1690 SEQADV 1JXP SER A 7 UNP P26663 ALA 1033 CONFLICT SEQADV 1JXP ILE A 18 UNP P26663 VAL 1044 CONFLICT SEQADV 1JXP TYR A 56 UNP P26663 PHE 1082 CONFLICT SEQADV 1JXP GLN A 86 UNP P26663 HIS 1112 CONFLICT SEQADV 1JXP SER A 122 UNP P26663 GLY 1148 CONFLICT SEQADV 1JXP VAL A 170 UNP P26663 ILE 1196 CONFLICT SEQADV 1JXP SER B 7 UNP P26663 ALA 1033 CONFLICT SEQADV 1JXP ILE B 18 UNP P26663 VAL 1044 CONFLICT SEQADV 1JXP TYR B 56 UNP P26663 PHE 1082 CONFLICT SEQADV 1JXP GLN B 86 UNP P26663 HIS 1112 CONFLICT SEQADV 1JXP SER B 122 UNP P26663 GLY 1148 CONFLICT SEQADV 1JXP VAL B 170 UNP P26663 ILE 1196 CONFLICT SEQRES 1 A 186 ALA PRO ILE THR ALA TYR SER GLN GLN THR ARG GLY LEU SEQRES 2 A 186 LEU GLY CYS ILE ILE THR SER LEU THR GLY ARG ASP LYS SEQRES 3 A 186 ASN GLN VAL GLU GLY GLU VAL GLN VAL VAL SER THR ALA SEQRES 4 A 186 THR GLN SER PHE LEU ALA THR CYS VAL ASN GLY VAL CYS SEQRES 5 A 186 TRP THR VAL TYR HIS GLY ALA GLY SER LYS THR LEU ALA SEQRES 6 A 186 GLY PRO LYS GLY PRO ILE THR GLN MET TYR THR ASN VAL SEQRES 7 A 186 ASP GLN ASP LEU VAL GLY TRP GLN ALA PRO PRO GLY ALA SEQRES 8 A 186 ARG SER LEU THR PRO CYS THR CYS GLY SER SER ASP LEU SEQRES 9 A 186 TYR LEU VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG SEQRES 10 A 186 ARG ARG GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG SEQRES 11 A 186 PRO VAL SER TYR LEU LYS GLY SER SER GLY GLY PRO LEU SEQRES 12 A 186 LEU CYS PRO SER GLY HIS ALA VAL GLY ILE PHE ARG ALA SEQRES 13 A 186 ALA VAL CYS THR ARG GLY VAL ALA LYS ALA VAL ASP PHE SEQRES 14 A 186 VAL PRO VAL GLU SER MET GLU THR THR MET ARG ALA SER SEQRES 15 A 186 LYS LYS LYS LYS SEQRES 1 C 16 LYS GLY SER VAL VAL ILE VAL GLY ARG ILE ILE LEU SER SEQRES 2 C 16 GLY ARG LYS SEQRES 1 B 186 ALA PRO ILE THR ALA TYR SER GLN GLN THR ARG GLY LEU SEQRES 2 B 186 LEU GLY CYS ILE ILE THR SER LEU THR GLY ARG ASP LYS SEQRES 3 B 186 ASN GLN VAL GLU GLY GLU VAL GLN VAL VAL SER THR ALA SEQRES 4 B 186 THR GLN SER PHE LEU ALA THR CYS VAL ASN GLY VAL CYS SEQRES 5 B 186 TRP THR VAL TYR HIS GLY ALA GLY SER LYS THR LEU ALA SEQRES 6 B 186 GLY PRO LYS GLY PRO ILE THR GLN MET TYR THR ASN VAL SEQRES 7 B 186 ASP GLN ASP LEU VAL GLY TRP GLN ALA PRO PRO GLY ALA SEQRES 8 B 186 ARG SER LEU THR PRO CYS THR CYS GLY SER SER ASP LEU SEQRES 9 B 186 TYR LEU VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG SEQRES 10 B 186 ARG ARG GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG SEQRES 11 B 186 PRO VAL SER TYR LEU LYS GLY SER SER GLY GLY PRO LEU SEQRES 12 B 186 LEU CYS PRO SER GLY HIS ALA VAL GLY ILE PHE ARG ALA SEQRES 13 B 186 ALA VAL CYS THR ARG GLY VAL ALA LYS ALA VAL ASP PHE SEQRES 14 B 186 VAL PRO VAL GLU SER MET GLU THR THR MET ARG ALA SER SEQRES 15 B 186 LYS LYS LYS LYS SEQRES 1 D 16 LYS GLY SER VAL VAL ILE VAL GLY ARG ILE ILE LEU SER SEQRES 2 D 16 GLY ARG LYS HET ZN A 190 1 HET ZN B 490 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *215(H2 O) HELIX 1 1 LEU A 13 LEU A 21 1 9 HELIX 2 2 TYR A 56 ALA A 59 1 4 HELIX 3 3 VAL A 132 LEU A 135 5 4 HELIX 4 4 VAL A 172 GLU A 176 1 5 HELIX 5 5 LEU B 13 LEU B 21 1 9 HELIX 6 6 TYR B 56 ALA B 59 1 4 HELIX 7 7 VAL B 78 GLN B 80 5 3 HELIX 8 8 VAL B 172 THR B 177 1 6 SHEET 1 A 5 VAL A 33 SER A 37 0 SHEET 2 A 5 SER A 42 VAL A 48 -1 N ALA A 45 O GLN A 34 SHEET 3 A 5 VAL A 51 VAL A 55 -1 N TRP A 53 O THR A 46 SHEET 4 A 5 LEU A 82 GLN A 86 -1 N TRP A 85 O CYS A 52 SHEET 5 A 5 GLN A 73 ASN A 77 -1 N ASN A 77 O LEU A 82 SHEET 1 B 2 LEU A 64 GLY A 66 0 SHEET 2 B 2 GLY A 69 ILE A 71 -1 N ILE A 71 O LEU A 64 SHEET 1 C 7 VAL A 113 ARG A 117 0 SHEET 2 C 7 ASP A 103 VAL A 107 -1 N LEU A 106 O ILE A 114 SHEET 3 C 7 PRO A 142 CYS A 145 -1 N LEU A 144 O TYR A 105 SHEET 4 C 7 HIS A 149 VAL A 158 -1 N GLY A 152 O LEU A 143 SHEET 5 C 7 ALA A 166 PRO A 171 -1 N VAL A 170 O ILE A 153 SHEET 6 C 7 ARG A 123 LEU A 126 -1 N GLY A 124 O VAL A 167 SHEET 7 C 7 VAL A 116 ARG A 118 -1 N ARG A 117 O SER A 125 SHEET 1 D 4 VAL B 33 SER B 37 0 SHEET 2 D 4 SER B 42 VAL B 48 -1 N ALA B 45 O GLN B 34 SHEET 3 D 4 VAL B 51 VAL B 55 -1 N TRP B 53 O THR B 46 SHEET 4 D 4 LEU B 82 GLN B 86 -1 N TRP B 85 O CYS B 52 SHEET 1 E 6 ASP B 103 VAL B 107 0 SHEET 2 E 6 VAL B 113 ARG B 118 -1 N VAL B 116 O LEU B 104 SHEET 3 E 6 ARG B 123 LEU B 126 -1 N SER B 125 O ARG B 117 SHEET 4 E 6 ALA B 166 PRO B 171 -1 N VAL B 167 O GLY B 124 SHEET 5 E 6 ALA B 150 VAL B 158 -1 N VAL B 158 O ALA B 166 SHEET 6 E 6 PRO B 142 LEU B 144 -1 N LEU B 143 O VAL B 151 LINK SG CYS A 97 ZN ZN A 190 1555 1555 2.29 LINK SG CYS A 99 ZN ZN A 190 1555 1555 2.46 LINK SG CYS A 145 ZN ZN A 190 1555 1555 1.76 LINK ZN ZN A 190 O HOH A 653 1555 1555 2.32 LINK SG CYS B 97 ZN ZN B 490 1555 1555 2.53 LINK O CYS B 97 ZN ZN B 490 1555 1555 2.61 LINK O THR B 98 ZN ZN B 490 1555 1555 2.35 LINK SG CYS B 99 ZN ZN B 490 1555 1555 2.56 LINK SG CYS B 145 ZN ZN B 490 1555 1555 2.58 SITE 1 AC1 5 CYS A 97 CYS A 99 SER A 101 CYS A 145 SITE 2 AC1 5 HOH A 653 SITE 1 AC2 5 CYS B 97 THR B 98 CYS B 99 CYS B 145 SITE 2 AC2 5 HOH B 876 CRYST1 96.960 96.960 167.100 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010314 0.005955 0.000000 0.00000 SCALE2 0.000000 0.011909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005984 0.00000