HEADER DNA BINDING PROTEIN 08-SEP-01 1JXS TITLE SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF INTERLEUKIN ENHANCER TITLE 2 BINDING FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN ENHANCER BINDING FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 SYNONYM: ILF-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ILF-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS DNA-BINDING DOMAIN, WINGED HELIX, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.J.CHUANG,P.P.LIU,C.LI,Y.H.HSIEH,S.W.CHEN,S.H.CHEN,W.Y.JENG REVDAT 4 29-MAY-24 1JXS 1 REMARK REVDAT 3 23-FEB-22 1JXS 1 REMARK REVDAT 2 24-FEB-09 1JXS 1 VERSN REVDAT 1 11-MAR-03 1JXS 0 JRNL AUTH P.P.LIU,Y.C.CHEN,C.LI,Y.H.HSIEH,S.W.CHEN,S.H.CHEN,W.Y.JENG, JRNL AUTH 2 W.J.CHUANG JRNL TITL SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF INTERLEUKIN JRNL TITL 2 ENHANCER BINDING FACTOR 1 (FOXK1A) JRNL REF PROTEINS: V. 49 543 2002 JRNL REF 2 STRUCT.,FUNCT.,GENET. JRNL REFN ISSN 0887-3585 JRNL PMID 12402362 JRNL DOI 10.1002/PROT.10227 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.85 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JXS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014308. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300; 300; 300 REMARK 210 PH : 6; 6; 6; 6 REMARK 210 IONIC STRENGTH : 125; 125; 125; 125 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM ILF, 25MM PHOSPHATE BUFFER, REMARK 210 100MM NACL; 3MM ILF, 25MM REMARK 210 PHOSPHATE BUFFER, 100MM NACL; REMARK 210 3MM ILF U-15N, 25MM PHOSPHATE REMARK 210 BUFFER, 100MM NACL; 2MM ILF U- REMARK 210 15N, 13C, 25MM PHOSPHATE BUFFER, REMARK 210 100MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; DQF-COSY; TOCSY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AURELIA 2.7.10, XWINNMR 2.6 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY REMARK 210 -DYNAMICAL SIMULATED ANNEALING REMARK 210 METHOD REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: HNCA, HN(CO)CA, HNCBCA, CBCA(CO)NH, HBHA(CBCA)NH, REMARK 210 HBHA(CBCACO)NH REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 6 -157.97 -122.07 REMARK 500 1 VAL A 13 -70.46 -64.19 REMARK 500 1 GLN A 14 -25.85 -39.10 REMARK 500 1 ASP A 21 -24.77 167.34 REMARK 500 1 ASN A 36 -70.27 -94.91 REMARK 500 1 TYR A 39 -72.32 -108.53 REMARK 500 1 ARG A 41 -45.97 -157.94 REMARK 500 1 ALA A 43 -33.78 178.53 REMARK 500 1 GLN A 48 -82.13 -52.83 REMARK 500 1 PRO A 65 -85.88 -78.71 REMARK 500 1 SER A 67 -149.55 -167.21 REMARK 500 1 GLU A 69 28.26 39.84 REMARK 500 1 SER A 75 141.91 -175.06 REMARK 500 1 ARG A 78 -163.95 -106.52 REMARK 500 1 ALA A 82 34.95 -94.39 REMARK 500 1 SER A 83 -57.17 -131.64 REMARK 500 1 GLU A 84 -81.71 -43.04 REMARK 500 1 SER A 85 -30.40 -31.97 REMARK 500 1 ALA A 91 -62.30 -98.63 REMARK 500 1 ARG A 93 -153.28 -77.42 REMARK 500 1 ARG A 96 94.93 -164.30 REMARK 500 2 LYS A 3 94.29 -33.65 REMARK 500 2 TYR A 6 -160.75 -112.07 REMARK 500 2 ASP A 21 -20.81 161.92 REMARK 500 2 PRO A 38 -72.35 -72.75 REMARK 500 2 TYR A 39 -70.84 -114.18 REMARK 500 2 TYR A 40 25.98 44.10 REMARK 500 2 ARG A 41 63.93 -167.89 REMARK 500 2 THR A 42 -35.97 -172.44 REMARK 500 2 GLN A 48 -82.61 -48.20 REMARK 500 2 PRO A 65 -165.46 -75.32 REMARK 500 2 ARG A 66 42.36 -86.36 REMARK 500 2 GLN A 68 71.23 -105.60 REMARK 500 2 GLU A 69 88.00 41.43 REMARK 500 2 ARG A 78 -163.51 -109.23 REMARK 500 2 SER A 83 -51.27 -146.53 REMARK 500 2 SER A 85 -28.41 -37.72 REMARK 500 2 ARG A 93 -156.42 -101.55 REMARK 500 2 LYS A 94 -168.76 -126.32 REMARK 500 2 ARG A 95 68.71 -119.18 REMARK 500 3 ASP A 21 -19.83 159.58 REMARK 500 3 THR A 31 -6.71 -55.32 REMARK 500 3 HIS A 32 -70.78 -100.84 REMARK 500 3 ASN A 36 -87.97 -99.23 REMARK 500 3 TYR A 37 165.78 -44.42 REMARK 500 3 PRO A 38 -87.12 -72.97 REMARK 500 3 TYR A 40 -50.48 164.25 REMARK 500 3 ARG A 41 50.22 -93.93 REMARK 500 3 THR A 42 -43.26 -150.02 REMARK 500 3 GLN A 48 -87.37 -49.62 REMARK 500 REMARK 500 THIS ENTRY HAS 373 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 41 0.21 SIDE CHAIN REMARK 500 1 ARG A 59 0.30 SIDE CHAIN REMARK 500 1 ARG A 66 0.26 SIDE CHAIN REMARK 500 1 ARG A 78 0.15 SIDE CHAIN REMARK 500 1 ARG A 93 0.21 SIDE CHAIN REMARK 500 1 ARG A 95 0.27 SIDE CHAIN REMARK 500 1 ARG A 96 0.30 SIDE CHAIN REMARK 500 1 ARG A 98 0.25 SIDE CHAIN REMARK 500 2 ARG A 41 0.17 SIDE CHAIN REMARK 500 2 ARG A 52 0.28 SIDE CHAIN REMARK 500 2 ARG A 59 0.31 SIDE CHAIN REMARK 500 2 ARG A 66 0.23 SIDE CHAIN REMARK 500 2 ARG A 78 0.32 SIDE CHAIN REMARK 500 2 ARG A 93 0.31 SIDE CHAIN REMARK 500 2 ARG A 95 0.30 SIDE CHAIN REMARK 500 2 ARG A 98 0.19 SIDE CHAIN REMARK 500 3 ARG A 41 0.17 SIDE CHAIN REMARK 500 3 ARG A 52 0.22 SIDE CHAIN REMARK 500 3 ARG A 59 0.29 SIDE CHAIN REMARK 500 3 ARG A 66 0.20 SIDE CHAIN REMARK 500 3 ARG A 78 0.32 SIDE CHAIN REMARK 500 3 ARG A 93 0.20 SIDE CHAIN REMARK 500 3 ARG A 95 0.23 SIDE CHAIN REMARK 500 3 ARG A 96 0.20 SIDE CHAIN REMARK 500 3 ARG A 98 0.12 SIDE CHAIN REMARK 500 4 ARG A 41 0.29 SIDE CHAIN REMARK 500 4 ARG A 52 0.23 SIDE CHAIN REMARK 500 4 ARG A 59 0.31 SIDE CHAIN REMARK 500 4 ARG A 66 0.23 SIDE CHAIN REMARK 500 4 ARG A 78 0.25 SIDE CHAIN REMARK 500 4 ARG A 95 0.32 SIDE CHAIN REMARK 500 4 ARG A 96 0.27 SIDE CHAIN REMARK 500 4 ARG A 98 0.31 SIDE CHAIN REMARK 500 5 ARG A 41 0.18 SIDE CHAIN REMARK 500 5 ARG A 52 0.09 SIDE CHAIN REMARK 500 5 ARG A 59 0.13 SIDE CHAIN REMARK 500 5 ARG A 66 0.32 SIDE CHAIN REMARK 500 5 ARG A 78 0.26 SIDE CHAIN REMARK 500 5 ARG A 93 0.22 SIDE CHAIN REMARK 500 5 ARG A 95 0.32 SIDE CHAIN REMARK 500 5 ARG A 96 0.31 SIDE CHAIN REMARK 500 5 ARG A 98 0.25 SIDE CHAIN REMARK 500 6 ARG A 41 0.31 SIDE CHAIN REMARK 500 6 ARG A 52 0.16 SIDE CHAIN REMARK 500 6 ARG A 59 0.13 SIDE CHAIN REMARK 500 6 ARG A 66 0.27 SIDE CHAIN REMARK 500 6 ARG A 78 0.27 SIDE CHAIN REMARK 500 6 ARG A 93 0.24 SIDE CHAIN REMARK 500 6 ARG A 95 0.28 SIDE CHAIN REMARK 500 6 ARG A 96 0.22 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 169 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4829 RELATED DB: BMRB REMARK 900 1H, 15N AND 13C RESONANCE ASSIGNMENTS FOR THE DNA-BINDING DOMAIN OF REMARK 900 INTERLEUKIN ENHANCER BINDING FACTOR DBREF 1JXS A 1 98 UNP Q01167 FOXK2_HUMAN 251 348 SEQRES 1 A 98 ASP SER LYS PRO PRO TYR SER TYR ALA GLN LEU ILE VAL SEQRES 2 A 98 GLN ALA ILE THR MET ALA PRO ASP LYS GLN LEU THR LEU SEQRES 3 A 98 ASN GLY ILE TYR THR HIS ILE THR LYS ASN TYR PRO TYR SEQRES 4 A 98 TYR ARG THR ALA ASP LYS GLY TRP GLN ASN SER ILE ARG SEQRES 5 A 98 HIS ASN LEU SER LEU ASN ARG TYR PHE ILE LYS VAL PRO SEQRES 6 A 98 ARG SER GLN GLU GLU PRO GLY LYS GLY SER PHE TRP ARG SEQRES 7 A 98 ILE ASP PRO ALA SER GLU SER LYS LEU ILE GLU GLN ALA SEQRES 8 A 98 PHE ARG LYS ARG ARG PRO ARG HELIX 1 1 ALA A 9 MET A 18 1 10 HELIX 2 2 THR A 25 TYR A 37 1 13 HELIX 3 3 TRP A 47 ASN A 58 1 12 HELIX 4 4 SER A 83 ARG A 93 1 11 SHEET 1 A 3 GLN A 23 LEU A 24 0 SHEET 2 A 3 PHE A 76 ILE A 79 -1 O TRP A 77 N LEU A 24 SHEET 3 A 3 PHE A 61 VAL A 64 -1 N VAL A 64 O PHE A 76 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1