HEADER CHAPERONE 11-SEP-01 1JYA TITLE CRYSTAL STRUCTURE OF SYCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YOPE REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: YOPE CHAPERONE SYCE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 GENE: SYCE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS SPECIFIC CHAPERONE, TYPE III SECRETION, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR P.GHOSH,S.BIRTALAN REVDAT 4 31-JAN-18 1JYA 1 REMARK REVDAT 3 24-FEB-09 1JYA 1 VERSN REVDAT 2 13-MAR-02 1JYA 1 SOURCE REMARK DBREF REVDAT 1 31-OCT-01 1JYA 0 JRNL AUTH S.BIRTALAN,P.GHOSH JRNL TITL STRUCTURE OF THE YERSINIA TYPE III SECRETORY SYSTEM JRNL TITL 2 CHAPERONE SYCE. JRNL REF NAT.STRUCT.BIOL. V. 8 974 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11685245 JRNL DOI 10.1038/NSB1101-974 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 46896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2376 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4487 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 207 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1895 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.02300 REMARK 3 B22 (A**2) : 0.31900 REMARK 3 B33 (A**2) : 1.70300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.160 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.01 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ATOMIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.036 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.818 ; 7.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.349 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.542 ; 9.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : 0.36500 REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: 25% PEG 4000, 0.3M MGCL2,0.1M TRIS, PH 8.5, 0.001M DTT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5, TEMPERATURE 100K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.87000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.87000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.87000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.59500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.87000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.59500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 119 REMARK 465 SER A 120 REMARK 465 SER A 121 REMARK 465 LEU A 122 REMARK 465 ILE A 123 REMARK 465 SER A 124 REMARK 465 PRO A 125 REMARK 465 PRO A 126 REMARK 465 ARG A 127 REMARK 465 SER A 128 REMARK 465 PHE A 129 REMARK 465 SER A 130 REMARK 465 MSE B 1 REMARK 465 ILE B 123 REMARK 465 SER B 124 REMARK 465 PRO B 125 REMARK 465 PRO B 126 REMARK 465 ARG B 127 REMARK 465 SER B 128 REMARK 465 PHE B 129 REMARK 465 SER B 130 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER B 53 REMARK 475 VAL B 83 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 21 CB CG OD1 OD2 REMARK 480 GLU A 33 CG CD OE1 OE2 REMARK 480 GLU A 59 CG CD OE1 OE2 REMARK 480 ASP A 99 CG OD1 OD2 REMARK 480 ASN A 101 OD1 ND2 REMARK 480 GLU A 115 CD OE1 OE2 REMARK 480 ARG A 116 NE CZ NH1 NH2 REMARK 480 GLN A 118 CG CD OE1 NE2 REMARK 480 TYR B 2 CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLN B 6 CG CD OE1 NE2 REMARK 480 GLN B 10 CG CD OE1 NE2 REMARK 480 GLN B 13 CG CD OE1 NE2 REMARK 480 LEU B 17 CG CD1 CD2 REMARK 480 ILE B 19 CB CG1 CG2 CD1 REMARK 480 THR B 22 OG1 CG2 REMARK 480 GLU B 24 CG CD OE1 OE2 REMARK 480 ASP B 55 CG OD1 OD2 REMARK 480 ASN B 56 CG OD1 ND2 REMARK 480 ASN B 57 CG OD1 ND2 REMARK 480 GLU B 59 CG CD OE1 OE2 REMARK 480 ASN B 101 CG OD1 ND2 REMARK 480 ARG B 116 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 55 O SER B 120 2.09 REMARK 500 O THR B 119 O HOH B 161 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 26 C ILE A 27 N 0.178 REMARK 500 SER B 120 CB SER B 120 OG -0.291 REMARK 500 SER B 120 C SER B 121 N -0.164 REMARK 500 SER B 121 CB SER B 121 OG 0.524 REMARK 500 SER B 121 C LEU B 122 N -0.317 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 26 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 ILE A 27 CA - C - N ANGL. DEV. = 21.7 DEGREES REMARK 500 ILE A 27 O - C - N ANGL. DEV. = -22.8 DEGREES REMARK 500 ASN B 91 CA - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 ASN B 91 O - C - N ANGL. DEV. = 14.8 DEGREES REMARK 500 GLN B 118 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 SER B 120 CA - CB - OG ANGL. DEV. = -24.3 DEGREES REMARK 500 SER B 120 CA - C - N ANGL. DEV. = 15.4 DEGREES REMARK 500 SER B 120 O - C - N ANGL. DEV. = -21.0 DEGREES REMARK 500 SER B 121 C - N - CA ANGL. DEV. = 23.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 41 117.66 -160.23 REMARK 500 GLU B 82 -50.56 -29.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 120 SER B 121 131.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 120 18.25 REMARK 500 SER B 121 16.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE SYCE PROTEIN, CHAINS A-B, MATCHES REMARK 999 SWISS PROT ENTRY P31491, WHOSE SOURCE IS YERSINIA PESTIS. REMARK 999 THE SOURCE OF THE SYCE PROTEIN IN THIS ENTRY IS YERSINIA REMARK 999 PSEUDOTUBERCULOSIS. DBREF 1JYA A 1 130 UNP P31491 YERA_YERPE 1 130 DBREF 1JYA B 1 130 UNP P31491 YERA_YERPE 1 130 SEQRES 1 A 130 MSE TYR SER PHE GLU GLN ALA ILE THR GLN LEU PHE GLN SEQRES 2 A 130 GLN LEU SER LEU SER ILE PRO ASP THR ILE GLU PRO VAL SEQRES 3 A 130 ILE GLY VAL LYS VAL GLY GLU PHE ALA CYS HIS ILE THR SEQRES 4 A 130 GLU HIS PRO VAL GLY GLN ILE LEU MSE PHE THR LEU PRO SEQRES 5 A 130 SER LEU ASP ASN ASN ASP GLU LYS GLU THR LEU LEU SER SEQRES 6 A 130 HIS ASN ILE PHE SER GLN ASP ILE LEU LYS PRO ILE LEU SEQRES 7 A 130 SER TRP ASP GLU VAL GLY GLY HIS PRO VAL LEU TRP ASN SEQRES 8 A 130 ARG GLN PRO LEU ASN SER LEU ASP ASN ASN SER LEU TYR SEQRES 9 A 130 THR GLN LEU GLU MSE LEU VAL GLN GLY ALA GLU ARG LEU SEQRES 10 A 130 GLN THR SER SER LEU ILE SER PRO PRO ARG SER PHE SER SEQRES 1 B 130 MSE TYR SER PHE GLU GLN ALA ILE THR GLN LEU PHE GLN SEQRES 2 B 130 GLN LEU SER LEU SER ILE PRO ASP THR ILE GLU PRO VAL SEQRES 3 B 130 ILE GLY VAL LYS VAL GLY GLU PHE ALA CYS HIS ILE THR SEQRES 4 B 130 GLU HIS PRO VAL GLY GLN ILE LEU MSE PHE THR LEU PRO SEQRES 5 B 130 SER LEU ASP ASN ASN ASP GLU LYS GLU THR LEU LEU SER SEQRES 6 B 130 HIS ASN ILE PHE SER GLN ASP ILE LEU LYS PRO ILE LEU SEQRES 7 B 130 SER TRP ASP GLU VAL GLY GLY HIS PRO VAL LEU TRP ASN SEQRES 8 B 130 ARG GLN PRO LEU ASN SER LEU ASP ASN ASN SER LEU TYR SEQRES 9 B 130 THR GLN LEU GLU MSE LEU VAL GLN GLY ALA GLU ARG LEU SEQRES 10 B 130 GLN THR SER SER LEU ILE SER PRO PRO ARG SER PHE SER MODRES 1JYA MSE A 48 MET SELENOMETHIONINE MODRES 1JYA MSE A 109 MET SELENOMETHIONINE MODRES 1JYA MSE B 48 MET SELENOMETHIONINE MODRES 1JYA MSE B 109 MET SELENOMETHIONINE HET MSE A 48 8 HET MSE A 109 8 HET MSE B 48 8 HET MSE B 109 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *133(H2 O) HELIX 1 1 SER A 3 SER A 16 1 14 HELIX 2 2 GLU A 59 SER A 65 1 7 HELIX 3 3 HIS A 66 ILE A 68 5 3 HELIX 4 4 ASN A 96 LEU A 98 5 3 HELIX 5 5 ASN A 101 LEU A 117 1 17 HELIX 6 6 SER B 3 LEU B 15 1 13 HELIX 7 7 GLU B 59 SER B 65 1 7 HELIX 8 8 HIS B 66 ILE B 68 5 3 HELIX 9 9 ASN B 96 LEU B 98 5 3 HELIX 10 10 ASN B 101 SER B 120 1 20 SHEET 1 A 5 VAL A 26 VAL A 31 0 SHEET 2 A 5 PHE A 34 GLU A 40 -1 O ILE A 38 N ILE A 27 SHEET 3 A 5 GLN A 45 THR A 50 -1 O LEU A 47 N THR A 39 SHEET 4 A 5 HIS A 86 PRO A 94 -1 O GLN A 93 N ILE A 46 SHEET 5 A 5 ILE A 77 ASP A 81 -1 N ILE A 77 O TRP A 90 SHEET 1 B 5 VAL B 26 VAL B 31 0 SHEET 2 B 5 PHE B 34 GLU B 40 -1 O ILE B 38 N ILE B 27 SHEET 3 B 5 GLN B 45 THR B 50 -1 O LEU B 47 N THR B 39 SHEET 4 B 5 HIS B 86 PRO B 94 -1 O GLN B 93 N ILE B 46 SHEET 5 B 5 ILE B 77 ASP B 81 -1 N ASP B 81 O HIS B 86 LINK C LEU A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N PHE A 49 1555 1555 1.33 LINK C GLU A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N LEU A 110 1555 1555 1.33 LINK C LEU B 47 N MSE B 48 1555 1555 1.33 LINK C MSE B 48 N PHE B 49 1555 1555 1.33 LINK C GLU B 108 N MSE B 109 1555 1555 1.33 LINK C MSE B 109 N LEU B 110 1555 1555 1.33 CISPEP 1 HIS A 41 PRO A 42 0 -1.63 CISPEP 2 HIS B 41 PRO B 42 0 -0.57 CRYST1 46.000 75.190 137.740 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007260 0.00000