HEADER RNA 14-SEP-01 1JZC TITLE THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA TITLE 2 PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*GP*GP*UP*GP*CP*AP*UP*GP*GP*CP*AP*CP*C)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MUTANT RNA TRILOOP 5'AUG3'OF THE RNA PROMOTER REGION SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS A MUTANT TRILOOP OF WHICH THE WILD SOURCE 4 TYPE IS NATURALLY OCCURING IN BROME MOSAIC VIRUS GENOMIC RNA KEYWDS RNA, BROME MOSAIC VIRUS, BMV, TRILOOP, REPLICATION, PROMOTER, RNA KEYWDS 2 POLYMERASE EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR C.-H.KIM,C.C.KAO REVDAT 3 23-FEB-22 1JZC 1 REMARK REVDAT 2 24-FEB-09 1JZC 1 VERSN REVDAT 1 07-OCT-03 1JZC 0 JRNL AUTH C.-H.KIM,C.C.KAO JRNL TITL A MUTANT VIRAL RNA PROMOTER WITH AN ALTERED CONFORMATION JRNL TITL 2 RETAINS EFFICIENT RECOGNITION BY A VIRAL RNA REPLICASE JRNL TITL 3 THROUGH A SOLUTION-EXPOSED ADENINE JRNL REF RNA V. 7 1476 2001 JRNL REFN ISSN 1355-8382 JRNL PMID 11680852 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.-H.KIM,C.C.KAO,I.TINOCO JR. REMARK 1 TITL RNA MOTIFS THAT DETERMINE SPECIFICITY BETWEEN A VIRAL REMARK 1 TITL 2 REPLICASE AND ITS PROMOTER REMARK 1 REF NAT.STRUCT.BIOL. V. 7 415 2000 REMARK 1 REFN ISSN 1072-8368 REMARK 1 DOI 10.1038/75202 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.-H.KIM,I.TINOCO JR. REMARK 1 TITL STRUCTURAL AND THERMODYNAMIC STUDIES ON MUTANT RNA MOTIFS REMARK 1 TITL 2 THAT IMPAIR THE SPECIFICITY BETWEEN A VIRAL REPLICASE AND REMARK 1 TITL 3 ITS PROMOTER REMARK 1 REF J.MOL.BIOL. V. 307 827 2001 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2001.4497 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.1 REMARK 3 AUTHORS : AXEL BRUNGER (X-PLOR), AXEL BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014364. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 283 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 10 MM NACL; 10 MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM RNA TRILOOP 13MER, 10MM NA REMARK 210 PHOSPHATE, PH=6.5; 2 MM RNA REMARK 210 TRILOOP 13MER, 10MM NA PHOSPHATE, REMARK 210 PH=6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, UXNMR, FELIX REMARK 210 METHOD USED : SIMULATED ANNEALING RESTRAINED REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 17 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : A STRUCUTRE AVERAGED OVER THESE REMARK 210 17 CALCULATED STRUCTURES. REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ESH RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE STEM-TRILOOP IN THE RNA PROMOTER REMARK 900 REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA REMARK 900 RELATED ID: 1I46 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE MUTANT STEM-TRILOOP IN THE RNA REMARK 900 PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA REMARK 900 RELATED ID: 1I4B RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE MUTANT STEM-TRILOOP IN THE RNA REMARK 900 PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA REMARK 900 RELATED ID: 1I4C RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE MUTANT STEM-TRILOOP IN THE RNA REMARK 900 PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA DBREF 1JZC A 1 13 PDB 1JZC 1JZC 1 13 SEQRES 1 A 13 G G U G C A U G G C A C C CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000