HEADER VIRAL PROTEIN 19-SEP-01 1K0H TITLE SOLUTION STRUCTURE OF BACTERIOPHAGE LAMBDA GPFII COMPND MOL_ID: 1; COMPND 2 MOLECULE: GPFII; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAIL ATTACHMENT PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 GENE: FII; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(LAMBDADE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS TWISTED BETA-SANDWICH, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.L.MAXWELL,A.A.YEE,C.H.ARROWSMITH,M.GOLD,A.R.DAVIDSON REVDAT 5 29-MAY-24 1K0H 1 REMARK REVDAT 4 23-FEB-22 1K0H 1 REMARK REVDAT 3 24-FEB-09 1K0H 1 VERSN REVDAT 2 18-DEC-02 1K0H 1 REMARK REVDAT 1 17-JUL-02 1K0H 0 JRNL AUTH K.L.MAXWELL,A.A.YEE,C.H.ARROWSMITH,M.GOLD,A.R.DAVIDSON JRNL TITL THE SOLUTION STRUCTURE OF THE BACTERIOPHAGE LAMBDA HEAD-TAIL JRNL TITL 2 JOINING PROTEIN, GPFII. JRNL REF J.MOL.BIOL. V. 318 1395 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12083526 JRNL DOI 10.1016/S0022-2836(02)00276-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K0H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000014405. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM GPFII U-15N, 13C; 10MM REMARK 210 PHOSPHATE BUFFER NA, 200MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, XEASY 1.3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 83 H GLU A 86 1.54 REMARK 500 H LEU A 65 O LEU A 103 1.57 REMARK 500 H ILE A 29 O ALA A 37 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 6 -76.29 64.48 REMARK 500 1 LEU A 7 -59.21 -163.76 REMARK 500 1 ASP A 9 60.12 -156.50 REMARK 500 1 ALA A 10 -54.80 -144.13 REMARK 500 1 ALA A 15 -66.29 -144.17 REMARK 500 1 ASP A 16 67.88 68.02 REMARK 500 1 GLU A 17 146.45 -173.87 REMARK 500 1 THR A 18 76.13 67.42 REMARK 500 1 ASN A 48 -73.29 70.90 REMARK 500 1 TYR A 51 -77.70 -100.85 REMARK 500 1 VAL A 56 -46.31 -161.09 REMARK 500 1 ARG A 57 -64.25 67.76 REMARK 500 1 VAL A 58 24.01 49.29 REMARK 500 1 GLU A 59 -49.57 -165.09 REMARK 500 1 THR A 69 -101.43 -171.21 REMARK 500 1 ASP A 70 35.29 177.95 REMARK 500 1 LEU A 75 61.53 -65.05 REMARK 500 1 ARG A 77 159.44 -42.02 REMARK 500 1 GLU A 86 31.16 98.65 REMARK 500 1 ARG A 92 174.15 -44.29 REMARK 500 1 SER A 94 85.02 -161.61 REMARK 500 1 ASP A 96 -52.16 -170.72 REMARK 500 1 ASP A 97 77.11 -108.18 REMARK 500 1 LEU A 103 77.22 61.99 REMARK 500 1 VAL A 109 94.12 -32.08 REMARK 500 1 ALA A 112 109.78 -48.87 REMARK 500 1 VAL A 113 25.16 -141.04 REMARK 500 1 ASN A 114 76.27 48.63 REMARK 500 2 ALA A 2 -68.63 69.28 REMARK 500 2 ASP A 5 60.75 -107.18 REMARK 500 2 PHE A 8 117.91 59.76 REMARK 500 2 ASP A 9 -51.51 -127.42 REMARK 500 2 ALA A 10 -64.62 -178.94 REMARK 500 2 ALA A 15 -179.11 55.02 REMARK 500 2 THR A 18 91.36 52.42 REMARK 500 2 TYR A 22 172.28 -59.26 REMARK 500 2 MET A 23 -81.99 -62.87 REMARK 500 2 GLU A 33 -75.63 -57.10 REMARK 500 2 GLU A 47 48.11 -107.66 REMARK 500 2 TYR A 51 63.11 -68.45 REMARK 500 2 ALA A 52 -67.12 67.21 REMARK 500 2 GLN A 54 136.51 69.72 REMARK 500 2 VAL A 58 37.58 -94.79 REMARK 500 2 GLU A 59 71.63 74.96 REMARK 500 2 SER A 61 -44.57 -169.99 REMARK 500 2 THR A 69 122.86 167.49 REMARK 500 2 ASP A 70 62.28 -66.36 REMARK 500 2 LEU A 75 63.24 -67.11 REMARK 500 2 ILE A 83 -136.84 -122.70 REMARK 500 2 GLU A 86 19.78 57.71 REMARK 500 REMARK 500 THIS ENTRY HAS 298 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1K0H A 1 117 UNP P03714 VCF2_LAMBD 1 117 SEQRES 1 A 117 MET ALA ASP PHE ASP ASN LEU PHE ASP ALA ALA ILE ALA SEQRES 2 A 117 ARG ALA ASP GLU THR ILE ARG GLY TYR MET GLY THR SER SEQRES 3 A 117 ALA THR ILE THR SER GLY GLU GLN SER GLY ALA VAL ILE SEQRES 4 A 117 ARG GLY VAL PHE ASP ASP PRO GLU ASN ILE SER TYR ALA SEQRES 5 A 117 GLY GLN GLY VAL ARG VAL GLU GLY SER SER PRO SER LEU SEQRES 6 A 117 PHE VAL ARG THR ASP GLU VAL ARG GLN LEU ARG ARG GLY SEQRES 7 A 117 ASP THR LEU THR ILE GLY GLU GLU ASN PHE TRP VAL ASP SEQRES 8 A 117 ARG VAL SER PRO ASP ASP GLY GLY SER CYS HIS LEU TRP SEQRES 9 A 117 LEU GLY ARG GLY VAL PRO PRO ALA VAL ASN ARG ARG ARG SHEET 1 A 5 SER A 64 VAL A 67 0 SHEET 2 A 5 ALA A 37 ASP A 44 -1 N ASP A 44 O SER A 64 SHEET 3 A 5 SER A 26 THR A 30 -1 N ILE A 29 O ALA A 37 SHEET 4 A 5 THR A 80 ILE A 83 -1 O THR A 80 N THR A 30 SHEET 5 A 5 PHE A 88 TRP A 89 -1 O PHE A 88 N LEU A 81 CISPEP 1 PRO A 110 PRO A 111 3 0.49 CISPEP 2 PRO A 110 PRO A 111 8 0.82 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1