HEADER TRANSFERASE/CELL CYCLE 03-OCT-01 1K3N TITLE NMR STRUCTURE OF THE FHA1 DOMAIN OF RAD53 IN COMPLEX WITH A RAD9- TITLE 2 DERIVED PHOSPHOTHREONINE (AT T155) PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE SPK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FHA DOMAIN (FHA1); COMPND 5 EC: 2.7.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA REPAIR PROTEIN RAD9; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 149-161; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SPK1 OR RAD53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS PHOSPHOTHREONINE PEPTIDE WAS CHEMICALLY SOURCE 14 SYNTHESIZED. KEYWDS FHA DOMAIN, RAD53, RAD9, PHOSPHOTHREONINE, PHOSPHOPROTEIN, KEYWDS 2 TRANSFERASE-CELL CYCLE COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.YUAN,S.YONGKIETTRAKUL,I.-J.L.BYEON,S.ZHOU,M.-D.TSAI REVDAT 5 06-NOV-24 1K3N 1 REMARK REVDAT 4 23-FEB-22 1K3N 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1K3N 1 VERSN REVDAT 2 01-APR-03 1K3N 1 JRNL REVDAT 1 05-DEC-01 1K3N 0 JRNL AUTH C.YUAN,S.YONGKIETTRAKUL,I.J.BYEON,S.ZHOU,M.D.TSAI JRNL TITL SOLUTION STRUCTURES OF TWO FHA1-PHOSPHOTHREONINE PEPTIDE JRNL TITL 2 COMPLEXES PROVIDE INSIGHT INTO THE STRUCTURAL BASIS OF THE JRNL TITL 3 LIGAND SPECIFICITY OF FHA1 FROM YEAST RAD53. JRNL REF J.MOL.BIOL. V. 314 563 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11846567 JRNL DOI 10.1006/JMBI.2001.5140 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.LIAO,C.YUAN,M.I.SU,S.YONGKIETTRAKUL,D.QIN,H.LI,I.J.BYEON, REMARK 1 AUTH 2 D.PEI,M.D.TSAI REMARK 1 TITL STRUCTURE OF THE FHA1 DOMAIN OF YEAST RAD53 AND REMARK 1 TITL 2 IDENTIFICATION OF BINDING SITES FOR BOTH FHA1 AND ITS TARGET REMARK 1 TITL 3 PROTEIN RAD9. REMARK 1 REF J.MOL.BIOL. V. 304 941 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2000.4291 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K3N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000014519. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE, 1MM DTT, REMARK 210 AND 1 MM EDTA REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM FHA1 U-15N,13C; 10 MM REMARK 210 SODIUM PHOSPHATE BUFFER (PH 6.5), REMARK 210 1MM DTT, AND 1 MM EDTA; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D_13C/15N-FILTERED_NOESY; 3D_13C-EDITED_13C/ REMARK 210 15N-FILTERED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, CNS 1.0 REMARK 210 METHOD USED : THE COMPLEX STRUCTURES ARE REMARK 210 GENERATED USING A TOTAL OF 2438 REMARK 210 RESTRAINTS. AMONG THEM, 3 REMARK 210 ARTIFICAL CONSTRAINTS, 192 TALOS- REMARK 210 DERIVED DIHEDRAL ANGLE RESTRAINS, REMARK 210 78 RESTRAINTS FROM H-BOND, 16 REMARK 210 INTERMOLECULAR DISTANCE REMARK 210 CONSTRAINS, AND 2149 INTRA-FHA1 REMARK 210 AND INTRA-PEPTIDE DISTANCE REMARK 210 CONSTRAINTS. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H PHE A 68 O PHE A 89 1.55 REMARK 500 H TRP A 66 O ILE A 91 1.58 REMARK 500 H GLN A 90 O ASN A 102 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 25 -174.71 64.48 REMARK 500 1 ASN A 31 -23.80 -154.87 REMARK 500 1 GLN A 42 -43.44 -145.36 REMARK 500 1 SER A 61 -165.02 62.27 REMARK 500 1 LYS A 63 -63.85 -90.41 REMARK 500 1 ASN A 80 68.77 176.32 REMARK 500 1 GLU A 95 -79.59 62.70 REMARK 500 1 ASP A 96 -41.96 -135.26 REMARK 500 1 ASN A 98 -174.90 -63.73 REMARK 500 1 ILE A 104 39.50 -144.26 REMARK 500 1 ASN A 119 34.86 34.19 REMARK 500 1 ASP A 128 174.96 -55.79 REMARK 500 1 ASP A 161 159.38 61.03 REMARK 500 1 ARG A 162 77.90 60.72 REMARK 500 1 GLN B 170 -60.65 -101.95 REMARK 500 1 PRO B 172 90.47 -66.69 REMARK 500 1 PRO B 175 106.99 -53.47 REMARK 500 1 LEU B 176 -179.37 -173.42 REMARK 500 2 ASN A 31 39.75 179.68 REMARK 500 2 GLN A 42 -45.60 -149.62 REMARK 500 2 LYS A 63 -72.90 -102.10 REMARK 500 2 LEU A 78 -71.63 -78.93 REMARK 500 2 ASN A 80 47.84 -175.32 REMARK 500 2 GLU A 95 -176.15 56.27 REMARK 500 2 ASN A 98 -176.44 -177.24 REMARK 500 2 ILE A 104 37.42 -150.75 REMARK 500 2 ASN A 119 33.14 35.89 REMARK 500 2 ASP A 128 174.56 -58.14 REMARK 500 2 ASP A 161 134.16 -172.40 REMARK 500 2 LYS B 166 150.60 62.11 REMARK 500 2 MET B 167 -47.29 -147.29 REMARK 500 2 THR B 168 116.76 62.06 REMARK 500 2 PHE B 169 -68.93 66.53 REMARK 500 2 TPO B 171 90.97 59.60 REMARK 500 2 ASP B 174 108.36 -176.80 REMARK 500 2 LEU B 176 179.82 59.77 REMARK 500 3 GLN A 25 81.20 60.47 REMARK 500 3 ASN A 31 34.03 -171.40 REMARK 500 3 GLN A 42 -40.57 -149.38 REMARK 500 3 LYS A 63 -61.77 -109.23 REMARK 500 3 LEU A 78 -72.64 -77.49 REMARK 500 3 ASN A 80 51.62 -173.62 REMARK 500 3 GLU A 95 -168.18 -56.47 REMARK 500 3 ASP A 96 -62.29 73.53 REMARK 500 3 ILE A 104 40.67 -146.61 REMARK 500 3 ASN A 119 36.27 34.91 REMARK 500 3 ASP A 128 173.40 -56.34 REMARK 500 3 ASN A 158 -90.90 43.52 REMARK 500 3 ASP A 161 93.18 60.61 REMARK 500 3 ARG A 162 73.27 -155.86 REMARK 500 REMARK 500 THIS ENTRY HAS 331 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G3G RELATED DB: PDB REMARK 900 1G3G IS THE NMR STRUCTURE OF THE FHA1 DOMAIN OF YEAST RAD53. REMARK 900 RELATED ID: 1K3J RELATED DB: PDB REMARK 900 1K3J IS THE REFINED NMR STRUCTURE OF THE FHA1 DOMAIN OF YEAST RAD53. DBREF 1K3N A 14 164 UNP P22216 RAD53_YEAST 14 164 DBREF 1K3N B 165 177 UNP P14737 RAD9_YEAST 149 161 SEQADV 1K3N TPO B 171 UNP P14737 THR 155 MODIFIED RESIDUE SEQRES 1 A 151 ALA THR GLN ARG PHE LEU ILE GLU LYS PHE SER GLN GLU SEQRES 2 A 151 GLN ILE GLY GLU ASN ILE VAL CYS ARG VAL ILE CYS THR SEQRES 3 A 151 THR GLY GLN ILE PRO ILE ARG ASP LEU SER ALA ASP ILE SEQRES 4 A 151 SER GLN VAL LEU LYS GLU LYS ARG SER ILE LYS LYS VAL SEQRES 5 A 151 TRP THR PHE GLY ARG ASN PRO ALA CYS ASP TYR HIS LEU SEQRES 6 A 151 GLY ASN ILE SER ARG LEU SER ASN LYS HIS PHE GLN ILE SEQRES 7 A 151 LEU LEU GLY GLU ASP GLY ASN LEU LEU LEU ASN ASP ILE SEQRES 8 A 151 SER THR ASN GLY THR TRP LEU ASN GLY GLN LYS VAL GLU SEQRES 9 A 151 LYS ASN SER ASN GLN LEU LEU SER GLN GLY ASP GLU ILE SEQRES 10 A 151 THR VAL GLY VAL GLY VAL GLU SER ASP ILE LEU SER LEU SEQRES 11 A 151 VAL ILE PHE ILE ASN ASP LYS PHE LYS GLN CYS LEU GLU SEQRES 12 A 151 GLN ASN LYS VAL ASP ARG ILE ARG SEQRES 1 B 13 LYS LYS MET THR PHE GLN TPO PRO THR ASP PRO LEU GLU MODRES 1K3N TPO B 171 THR PHOSPHOTHREONINE HET TPO B 171 17 HETNAM TPO PHOSPHOTHREONINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO C4 H10 N O6 P HELIX 1 1 THR A 15 GLN A 25 1 11 HELIX 2 2 ASP A 51 GLU A 58 1 8 HELIX 3 3 ASN A 148 ASN A 158 1 11 SHEET 1 A 6 ARG A 46 LEU A 48 0 SHEET 2 A 6 CYS A 34 ILE A 37 -1 N CYS A 34 O LEU A 48 SHEET 3 A 6 LEU A 141 ILE A 147 -1 O PHE A 146 N ARG A 35 SHEET 4 A 6 GLU A 129 VAL A 132 -1 N VAL A 132 O LEU A 141 SHEET 5 A 6 THR A 109 LEU A 111 -1 N TRP A 110 O THR A 131 SHEET 6 A 6 GLN A 114 LYS A 115 -1 O GLN A 114 N LEU A 111 SHEET 1 B 5 TYR A 76 HIS A 77 0 SHEET 2 B 5 ILE A 62 GLY A 69 1 N GLY A 69 O TYR A 76 SHEET 3 B 5 PHE A 89 GLY A 94 -1 O PHE A 89 N PHE A 68 SHEET 4 B 5 LEU A 99 ASP A 103 -1 O ASN A 102 N GLN A 90 SHEET 5 B 5 ASN A 121 LEU A 123 -1 O GLN A 122 N LEU A 101 LINK C GLN B 170 N TPO B 171 1555 1555 1.33 LINK C TPO B 171 N PRO B 172 1555 1555 1.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1