data_1K5E # _entry.id 1K5E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1K5E pdb_00001k5e 10.2210/pdb1k5e/pdb RCSB RCSB014581 ? ? WWPDB D_1000014581 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-01-23 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1K5E _pdbx_database_status.recvd_initial_deposition_date 2001-10-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1K5F _pdbx_database_related.details ;1K5F is the SAME STRUCTURE WITH (S)-(N-PHENYL-2-HYDROXY-ETHYL)-2'-DEOXY-ADENOSINE-5'-MONOPHOSPHATE. ; _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hennard, C.' 1 'Finneman, J.' 2 'Harris, C.M.' 3 'Harris, T.M.' 4 'Stone, M.P.' 5 # _citation.id primary _citation.title ;The nonmutagenic (R)- and (S)-beta-(N(6)-adenyl)styrene oxide adducts are oriented in the major groove and show little perturbation to DNA structure. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 40 _citation.page_first 9780 _citation.page_last 9791 _citation.year 2001 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11502171 _citation.pdbx_database_id_DOI 10.1021/bi010564v # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hennard, C.' 1 ? primary 'Finneman, J.' 2 ? primary 'Harris, C.M.' 3 ? primary 'Harris, T.M.' 4 ? primary 'Stone, M.P.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*GP*AP*CP*(ABR)P*AP*GP*AP*AP*G)-3'" 3536.411 1 ? ? ? 'N-RAS Protooncogene' 2 polymer syn "5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'" 3291.145 1 ? ? ? 'N-RAS Protooncogene' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DG)(DA)(DC)(ABR)(DA)(DG)(DA)(DA)(DG)' CGGACAAGAAG A ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DT)(DC)(DT)(DT)(DG)(DT)(DC)(DC)(DG)' CTTCTTGTCCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 ABR n 1 7 DA n 1 8 DG n 1 9 DA n 1 10 DA n 1 11 DG n 2 1 DC n 2 2 DT n 2 3 DT n 2 4 DC n 2 5 DT n 2 6 DT n 2 7 DG n 2 8 DT n 2 9 DC n 2 10 DC n 2 11 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This sequence was generated by an oligonucleotide synthesizer' 2 1 sample ? ? ? ? ? 'This sequence was generated by an oligonucleotide synthesizer' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ABR 'DNA linking' n "(R)-(N-PHENYL-2-HYDROXY-ETHYL)-2'-DEOXY-ADENOSINE-5'-MONOPHOSPHATE" ? 'C18 H22 N5 O7 P' 451.370 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 ABR 6 6 6 ABR ABR A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DG 11 11 11 DG G A . n B 2 1 DC 1 12 12 DC C B . n B 2 2 DT 2 13 13 DT T B . n B 2 3 DT 3 14 14 DT T B . n B 2 4 DC 4 15 15 DC C B . n B 2 5 DT 5 16 16 DT T B . n B 2 6 DT 6 17 17 DT T B . n B 2 7 DG 7 18 18 DG G B . n B 2 8 DT 8 19 19 DT T B . n B 2 9 DC 9 20 20 DC C B . n B 2 10 DC 10 21 21 DC C B . n B 2 11 DG 11 22 22 DG G B . n # _exptl.entry_id 1K5E _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1K5E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1K5E _struct.title 'Solution Structure of R-styrene Adduct in the Ras61 Sequence' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1K5E _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'styrene, DNA adduct, solution structure of DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1K5E 1K5E ? ? ? 2 2 PDB 1K5E 1K5E ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1K5E A 1 ? 11 ? 1K5E 1 ? 11 ? 1 11 2 2 1K5E B 1 ? 11 ? 1K5E 12 ? 22 ? 12 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 5 "O3'" ? ? ? 1_555 A ABR 6 P ? ? A DC 5 A ABR 6 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale2 covale both ? A ABR 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A ABR 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.613 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 3 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 3 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 3 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A ABR 6 N1 ? ? ? 1_555 B DT 6 N3 ? ? A ABR 6 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A ABR 6 N6 ? ? ? 1_555 B DT 6 O4 ? ? A ABR 6 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 7 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 7 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 10 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 10 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HA A ABR 6 ? ? O4 B DT 16 ? ? 1.43 2 1 "H2''" B DC 15 ? ? "O5'" B DT 16 ? ? 1.48 3 1 CA A ABR 6 ? ? O4 B DT 16 ? ? 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.86 108.30 2.56 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.85 108.30 2.55 0.30 N 3 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 117.58 113.10 4.48 0.50 N 4 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.98 106.40 -2.42 0.40 N 5 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.10 108.30 2.80 0.30 N 6 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.66 113.10 4.56 0.50 N 7 1 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.89 106.40 -2.51 0.40 N 8 1 N7 A DA 4 ? ? C8 A DA 4 ? ? N9 A DA 4 ? ? 117.63 113.80 3.83 0.50 N 9 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.77 108.30 2.47 0.30 N 10 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.13 108.30 1.83 0.30 N 11 1 N7 A DA 7 ? ? C8 A DA 7 ? ? N9 A DA 7 ? ? 117.65 113.80 3.85 0.50 N 12 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.30 108.30 2.00 0.30 N 13 1 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.78 113.10 4.68 0.50 N 14 1 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.87 106.40 -2.53 0.40 N 15 1 N7 A DA 9 ? ? C8 A DA 9 ? ? N9 A DA 9 ? ? 117.46 113.80 3.66 0.50 N 16 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.72 108.30 2.42 0.30 N 17 1 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.65 113.80 3.85 0.50 N 18 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.39 108.30 2.09 0.30 N 19 1 N7 A DG 11 ? ? C8 A DG 11 ? ? N9 A DG 11 ? ? 117.67 113.10 4.57 0.50 N 20 1 C8 A DG 11 ? ? N9 A DG 11 ? ? C4 A DG 11 ? ? 103.88 106.40 -2.52 0.40 N 21 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 110.33 108.30 2.03 0.30 N 22 1 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 110.95 108.30 2.65 0.30 N 23 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 111.10 108.30 2.80 0.30 N 24 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.85 108.30 2.55 0.30 N 25 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 110.54 108.30 2.24 0.30 N 26 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 110.54 108.30 2.24 0.30 N 27 1 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.89 108.30 2.59 0.30 N 28 1 N7 B DG 18 ? ? C8 B DG 18 ? ? N9 B DG 18 ? ? 117.59 113.10 4.49 0.50 N 29 1 C8 B DG 18 ? ? N9 B DG 18 ? ? C4 B DG 18 ? ? 103.80 106.40 -2.60 0.40 N 30 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.77 108.30 2.47 0.30 N 31 1 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.19 108.30 2.89 0.30 N 32 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 111.02 108.30 2.72 0.30 N 33 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.17 108.30 2.87 0.30 N 34 1 N7 B DG 22 ? ? C8 B DG 22 ? ? N9 B DG 22 ? ? 117.63 113.10 4.53 0.50 N 35 1 C8 B DG 22 ? ? N9 B DG 22 ? ? C4 B DG 22 ? ? 103.79 106.40 -2.61 0.40 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ABR _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ABR _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DA _pdbx_struct_mod_residue.details ? # _pdbx_nmr_ensemble.entry_id 1K5E _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'back calculated data agree with experimental NOESY spectrum' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1K5E _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '130 OD260 of double stranded oligodeoxynucleotide are dissolved in 0.5 ml nmr buffer containing 99.996% D2O.' _pdbx_nmr_sample_details.solvent_system 'The buffer is 10mM sodium phosphate pH 6.9 containing 100mM NaCl and 0.05mM Na2EDTA.' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.9 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10mM phosphate buffer' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 Noesy 2 1 1 DQF-COSY # _pdbx_nmr_details.entry_id 1K5E _pdbx_nmr_details.text 'NOESY at 100, 150 and 200 ms mixing time' # _pdbx_nmr_refine.entry_id 1K5E _pdbx_nmr_refine.method ;simulated annealing, molecular dynamics, matrix relaxation ; _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Felix 97 collection 'Molecular simulations' 1 MARDIGRAS 3.0 refinement 'James, TL' 2 X-PLOR 3.85 'iterative matrix relaxation' Brunger 3 CORMA 4.0 'data analysis' James 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ABR P P N N 1 ABR OP1 O N N 2 ABR OP2 O N N 3 ABR "O5'" O N N 4 ABR "C5'" C N N 5 ABR "C4'" C N R 6 ABR "O4'" O N N 7 ABR "C1'" C N R 8 ABR N9 N Y N 9 ABR C4 C Y N 10 ABR N3 N Y N 11 ABR C2 C Y N 12 ABR N1 N Y N 13 ABR C6 C Y N 14 ABR N6 N N N 15 ABR CA C N R 16 ABR OA O N N 17 ABR CB C N N 18 ABR CS6 C Y N 19 ABR CS1 C Y N 20 ABR CS5 C Y N 21 ABR CS2 C Y N 22 ABR CS4 C Y N 23 ABR CS3 C Y N 24 ABR C5 C Y N 25 ABR N7 N Y N 26 ABR C8 C Y N 27 ABR "C2'" C N N 28 ABR "C3'" C N S 29 ABR "O3'" O N N 30 ABR OP3 O N N 31 ABR HOP2 H N N 32 ABR "H5'" H N N 33 ABR "H5''" H N N 34 ABR "H4'" H N N 35 ABR "H1'" H N N 36 ABR H2 H N N 37 ABR H6 H N N 38 ABR HA H N N 39 ABR HOA H N N 40 ABR HB1 H N N 41 ABR HB2 H N N 42 ABR HS1 H N N 43 ABR HS5 H N N 44 ABR HS2 H N N 45 ABR HS4 H N N 46 ABR HS3 H N N 47 ABR H8 H N N 48 ABR "H2'" H N N 49 ABR "H2''" H N N 50 ABR "H3'" H N N 51 ABR "HO3'" H N N 52 ABR HOP3 H N N 53 DA OP3 O N N 54 DA P P N N 55 DA OP1 O N N 56 DA OP2 O N N 57 DA "O5'" O N N 58 DA "C5'" C N N 59 DA "C4'" C N R 60 DA "O4'" O N N 61 DA "C3'" C N S 62 DA "O3'" O N N 63 DA "C2'" C N N 64 DA "C1'" C N R 65 DA N9 N Y N 66 DA C8 C Y N 67 DA N7 N Y N 68 DA C5 C Y N 69 DA C6 C Y N 70 DA N6 N N N 71 DA N1 N Y N 72 DA C2 C Y N 73 DA N3 N Y N 74 DA C4 C Y N 75 DA HOP3 H N N 76 DA HOP2 H N N 77 DA "H5'" H N N 78 DA "H5''" H N N 79 DA "H4'" H N N 80 DA "H3'" H N N 81 DA "HO3'" H N N 82 DA "H2'" H N N 83 DA "H2''" H N N 84 DA "H1'" H N N 85 DA H8 H N N 86 DA H61 H N N 87 DA H62 H N N 88 DA H2 H N N 89 DC OP3 O N N 90 DC P P N N 91 DC OP1 O N N 92 DC OP2 O N N 93 DC "O5'" O N N 94 DC "C5'" C N N 95 DC "C4'" C N R 96 DC "O4'" O N N 97 DC "C3'" C N S 98 DC "O3'" O N N 99 DC "C2'" C N N 100 DC "C1'" C N R 101 DC N1 N N N 102 DC C2 C N N 103 DC O2 O N N 104 DC N3 N N N 105 DC C4 C N N 106 DC N4 N N N 107 DC C5 C N N 108 DC C6 C N N 109 DC HOP3 H N N 110 DC HOP2 H N N 111 DC "H5'" H N N 112 DC "H5''" H N N 113 DC "H4'" H N N 114 DC "H3'" H N N 115 DC "HO3'" H N N 116 DC "H2'" H N N 117 DC "H2''" H N N 118 DC "H1'" H N N 119 DC H41 H N N 120 DC H42 H N N 121 DC H5 H N N 122 DC H6 H N N 123 DG OP3 O N N 124 DG P P N N 125 DG OP1 O N N 126 DG OP2 O N N 127 DG "O5'" O N N 128 DG "C5'" C N N 129 DG "C4'" C N R 130 DG "O4'" O N N 131 DG "C3'" C N S 132 DG "O3'" O N N 133 DG "C2'" C N N 134 DG "C1'" C N R 135 DG N9 N Y N 136 DG C8 C Y N 137 DG N7 N Y N 138 DG C5 C Y N 139 DG C6 C N N 140 DG O6 O N N 141 DG N1 N N N 142 DG C2 C N N 143 DG N2 N N N 144 DG N3 N N N 145 DG C4 C Y N 146 DG HOP3 H N N 147 DG HOP2 H N N 148 DG "H5'" H N N 149 DG "H5''" H N N 150 DG "H4'" H N N 151 DG "H3'" H N N 152 DG "HO3'" H N N 153 DG "H2'" H N N 154 DG "H2''" H N N 155 DG "H1'" H N N 156 DG H8 H N N 157 DG H1 H N N 158 DG H21 H N N 159 DG H22 H N N 160 DT OP3 O N N 161 DT P P N N 162 DT OP1 O N N 163 DT OP2 O N N 164 DT "O5'" O N N 165 DT "C5'" C N N 166 DT "C4'" C N R 167 DT "O4'" O N N 168 DT "C3'" C N S 169 DT "O3'" O N N 170 DT "C2'" C N N 171 DT "C1'" C N R 172 DT N1 N N N 173 DT C2 C N N 174 DT O2 O N N 175 DT N3 N N N 176 DT C4 C N N 177 DT O4 O N N 178 DT C5 C N N 179 DT C7 C N N 180 DT C6 C N N 181 DT HOP3 H N N 182 DT HOP2 H N N 183 DT "H5'" H N N 184 DT "H5''" H N N 185 DT "H4'" H N N 186 DT "H3'" H N N 187 DT "HO3'" H N N 188 DT "H2'" H N N 189 DT "H2''" H N N 190 DT "H1'" H N N 191 DT H3 H N N 192 DT H71 H N N 193 DT H72 H N N 194 DT H73 H N N 195 DT H6 H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ABR P OP1 doub N N 1 ABR P OP2 sing N N 2 ABR P "O5'" sing N N 3 ABR P OP3 sing N N 4 ABR OP2 HOP2 sing N N 5 ABR "O5'" "C5'" sing N N 6 ABR "C5'" "C4'" sing N N 7 ABR "C5'" "H5'" sing N N 8 ABR "C5'" "H5''" sing N N 9 ABR "C4'" "O4'" sing N N 10 ABR "C4'" "C3'" sing N N 11 ABR "C4'" "H4'" sing N N 12 ABR "O4'" "C1'" sing N N 13 ABR "C1'" N9 sing N N 14 ABR "C1'" "C2'" sing N N 15 ABR "C1'" "H1'" sing N N 16 ABR N9 C4 sing Y N 17 ABR N9 C8 sing Y N 18 ABR C4 N3 doub Y N 19 ABR C4 C5 sing Y N 20 ABR N3 C2 sing Y N 21 ABR C2 N1 doub Y N 22 ABR C2 H2 sing N N 23 ABR N1 C6 sing Y N 24 ABR C6 N6 sing N N 25 ABR C6 C5 doub Y N 26 ABR N6 CB sing N N 27 ABR N6 H6 sing N N 28 ABR CA OA sing N N 29 ABR CA CB sing N N 30 ABR CA CS6 sing N N 31 ABR CA HA sing N N 32 ABR OA HOA sing N N 33 ABR CB HB1 sing N N 34 ABR CB HB2 sing N N 35 ABR CS6 CS1 doub Y N 36 ABR CS6 CS5 sing Y N 37 ABR CS1 CS2 sing Y N 38 ABR CS1 HS1 sing N N 39 ABR CS5 CS4 doub Y N 40 ABR CS5 HS5 sing N N 41 ABR CS2 CS3 doub Y N 42 ABR CS2 HS2 sing N N 43 ABR CS4 CS3 sing Y N 44 ABR CS4 HS4 sing N N 45 ABR CS3 HS3 sing N N 46 ABR C5 N7 sing Y N 47 ABR N7 C8 doub Y N 48 ABR C8 H8 sing N N 49 ABR "C2'" "C3'" sing N N 50 ABR "C2'" "H2'" sing N N 51 ABR "C2'" "H2''" sing N N 52 ABR "C3'" "O3'" sing N N 53 ABR "C3'" "H3'" sing N N 54 ABR "O3'" "HO3'" sing N N 55 ABR OP3 HOP3 sing N N 56 DA OP3 P sing N N 57 DA OP3 HOP3 sing N N 58 DA P OP1 doub N N 59 DA P OP2 sing N N 60 DA P "O5'" sing N N 61 DA OP2 HOP2 sing N N 62 DA "O5'" "C5'" sing N N 63 DA "C5'" "C4'" sing N N 64 DA "C5'" "H5'" sing N N 65 DA "C5'" "H5''" sing N N 66 DA "C4'" "O4'" sing N N 67 DA "C4'" "C3'" sing N N 68 DA "C4'" "H4'" sing N N 69 DA "O4'" "C1'" sing N N 70 DA "C3'" "O3'" sing N N 71 DA "C3'" "C2'" sing N N 72 DA "C3'" "H3'" sing N N 73 DA "O3'" "HO3'" sing N N 74 DA "C2'" "C1'" sing N N 75 DA "C2'" "H2'" sing N N 76 DA "C2'" "H2''" sing N N 77 DA "C1'" N9 sing N N 78 DA "C1'" "H1'" sing N N 79 DA N9 C8 sing Y N 80 DA N9 C4 sing Y N 81 DA C8 N7 doub Y N 82 DA C8 H8 sing N N 83 DA N7 C5 sing Y N 84 DA C5 C6 sing Y N 85 DA C5 C4 doub Y N 86 DA C6 N6 sing N N 87 DA C6 N1 doub Y N 88 DA N6 H61 sing N N 89 DA N6 H62 sing N N 90 DA N1 C2 sing Y N 91 DA C2 N3 doub Y N 92 DA C2 H2 sing N N 93 DA N3 C4 sing Y N 94 DC OP3 P sing N N 95 DC OP3 HOP3 sing N N 96 DC P OP1 doub N N 97 DC P OP2 sing N N 98 DC P "O5'" sing N N 99 DC OP2 HOP2 sing N N 100 DC "O5'" "C5'" sing N N 101 DC "C5'" "C4'" sing N N 102 DC "C5'" "H5'" sing N N 103 DC "C5'" "H5''" sing N N 104 DC "C4'" "O4'" sing N N 105 DC "C4'" "C3'" sing N N 106 DC "C4'" "H4'" sing N N 107 DC "O4'" "C1'" sing N N 108 DC "C3'" "O3'" sing N N 109 DC "C3'" "C2'" sing N N 110 DC "C3'" "H3'" sing N N 111 DC "O3'" "HO3'" sing N N 112 DC "C2'" "C1'" sing N N 113 DC "C2'" "H2'" sing N N 114 DC "C2'" "H2''" sing N N 115 DC "C1'" N1 sing N N 116 DC "C1'" "H1'" sing N N 117 DC N1 C2 sing N N 118 DC N1 C6 sing N N 119 DC C2 O2 doub N N 120 DC C2 N3 sing N N 121 DC N3 C4 doub N N 122 DC C4 N4 sing N N 123 DC C4 C5 sing N N 124 DC N4 H41 sing N N 125 DC N4 H42 sing N N 126 DC C5 C6 doub N N 127 DC C5 H5 sing N N 128 DC C6 H6 sing N N 129 DG OP3 P sing N N 130 DG OP3 HOP3 sing N N 131 DG P OP1 doub N N 132 DG P OP2 sing N N 133 DG P "O5'" sing N N 134 DG OP2 HOP2 sing N N 135 DG "O5'" "C5'" sing N N 136 DG "C5'" "C4'" sing N N 137 DG "C5'" "H5'" sing N N 138 DG "C5'" "H5''" sing N N 139 DG "C4'" "O4'" sing N N 140 DG "C4'" "C3'" sing N N 141 DG "C4'" "H4'" sing N N 142 DG "O4'" "C1'" sing N N 143 DG "C3'" "O3'" sing N N 144 DG "C3'" "C2'" sing N N 145 DG "C3'" "H3'" sing N N 146 DG "O3'" "HO3'" sing N N 147 DG "C2'" "C1'" sing N N 148 DG "C2'" "H2'" sing N N 149 DG "C2'" "H2''" sing N N 150 DG "C1'" N9 sing N N 151 DG "C1'" "H1'" sing N N 152 DG N9 C8 sing Y N 153 DG N9 C4 sing Y N 154 DG C8 N7 doub Y N 155 DG C8 H8 sing N N 156 DG N7 C5 sing Y N 157 DG C5 C6 sing N N 158 DG C5 C4 doub Y N 159 DG C6 O6 doub N N 160 DG C6 N1 sing N N 161 DG N1 C2 sing N N 162 DG N1 H1 sing N N 163 DG C2 N2 sing N N 164 DG C2 N3 doub N N 165 DG N2 H21 sing N N 166 DG N2 H22 sing N N 167 DG N3 C4 sing N N 168 DT OP3 P sing N N 169 DT OP3 HOP3 sing N N 170 DT P OP1 doub N N 171 DT P OP2 sing N N 172 DT P "O5'" sing N N 173 DT OP2 HOP2 sing N N 174 DT "O5'" "C5'" sing N N 175 DT "C5'" "C4'" sing N N 176 DT "C5'" "H5'" sing N N 177 DT "C5'" "H5''" sing N N 178 DT "C4'" "O4'" sing N N 179 DT "C4'" "C3'" sing N N 180 DT "C4'" "H4'" sing N N 181 DT "O4'" "C1'" sing N N 182 DT "C3'" "O3'" sing N N 183 DT "C3'" "C2'" sing N N 184 DT "C3'" "H3'" sing N N 185 DT "O3'" "HO3'" sing N N 186 DT "C2'" "C1'" sing N N 187 DT "C2'" "H2'" sing N N 188 DT "C2'" "H2''" sing N N 189 DT "C1'" N1 sing N N 190 DT "C1'" "H1'" sing N N 191 DT N1 C2 sing N N 192 DT N1 C6 sing N N 193 DT C2 O2 doub N N 194 DT C2 N3 sing N N 195 DT N3 C4 sing N N 196 DT N3 H3 sing N N 197 DT C4 O4 doub N N 198 DT C4 C5 sing N N 199 DT C5 C7 sing N N 200 DT C5 C6 doub N N 201 DT C7 H71 sing N N 202 DT C7 H72 sing N N 203 DT C7 H73 sing N N 204 DT C6 H6 sing N N 205 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1K5E 'double helix' 1K5E 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.115 -0.122 0.324 -8.032 -10.320 -2.802 1 A_DC1:DG22_B A 1 ? B 22 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 -0.223 -0.095 -0.232 -10.951 -9.208 1.042 2 A_DG2:DC21_B A 2 ? B 21 ? 19 1 1 A DG 3 1_555 B DC 9 1_555 -0.195 -0.105 -0.209 -10.182 -10.098 0.655 3 A_DG3:DC20_B A 3 ? B 20 ? 19 1 1 A DA 4 1_555 B DT 8 1_555 0.101 -0.196 0.399 -10.001 -2.904 1.895 4 A_DA4:DT19_B A 4 ? B 19 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.318 -0.083 0.119 -6.305 7.304 1.607 5 A_DC5:DG18_B A 5 ? B 18 ? 19 1 1 A ABR 6 1_555 B DT 6 1_555 -0.039 -0.147 -0.300 6.967 -12.813 -1.586 6 A_ABR6:DT17_B A 6 ? B 17 ? 20 1 1 A DA 7 1_555 B DT 5 1_555 -0.049 -0.170 0.160 1.649 -11.783 4.197 7 A_DA7:DT16_B A 7 ? B 16 ? 20 1 1 A DG 8 1_555 B DC 4 1_555 -0.065 -0.179 -0.176 -2.161 -13.492 -3.323 8 A_DG8:DC15_B A 8 ? B 15 ? 19 1 1 A DA 9 1_555 B DT 3 1_555 -0.055 -0.123 0.164 -0.962 -2.256 0.142 9 A_DA9:DT14_B A 9 ? B 14 ? 20 1 1 A DA 10 1_555 B DT 2 1_555 -0.031 -0.118 -0.064 3.950 -7.185 2.190 10 A_DA10:DT13_B A 10 ? B 13 ? 20 1 1 A DG 11 1_555 B DC 1 1_555 -0.095 -0.162 0.160 1.145 -14.343 -3.004 11 A_DG11:DC12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 0.047 -0.621 3.098 1.345 11.695 29.098 -3.165 0.144 2.656 22.167 -2.549 31.342 1 AA_DC1DG2:DC21DG22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DG 2 1_555 B DC 10 1_555 A DG 3 1_555 B DC 9 1_555 -0.039 -0.637 3.301 -3.411 4.403 32.846 -1.844 -0.499 3.179 7.718 5.979 33.302 2 AA_DG2DG3:DC20DC21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DG 3 1_555 B DC 9 1_555 A DA 4 1_555 B DT 8 1_555 0.353 -0.829 3.262 -6.529 0.138 33.315 -1.443 -1.639 3.135 0.238 11.254 33.931 3 AA_DG3DA4:DT19DC20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DA 4 1_555 B DT 8 1_555 A DC 5 1_555 B DG 7 1_555 -0.021 -1.079 3.180 4.330 1.862 32.073 -2.249 0.771 3.085 3.348 -7.784 32.409 4 AA_DA4DC5:DG18DT19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DC 5 1_555 B DG 7 1_555 A ABR 6 1_555 B DT 6 1_555 -0.532 -0.755 2.745 6.820 3.705 30.234 -1.974 2.040 2.462 6.960 -12.812 31.192 5 AA_DC5ABR6:DT17DG18_BB A 5 ? B 18 ? A 6 ? B 17 ? 1 A ABR 6 1_555 B DT 6 1_555 A DA 7 1_555 B DT 5 1_555 -0.383 0.807 3.507 -4.363 4.643 41.305 0.600 0.037 3.594 6.535 6.141 41.772 6 AA_ABR6DA7:DT16DT17_BB A 6 ? B 17 ? A 7 ? B 16 ? 1 A DA 7 1_555 B DT 5 1_555 A DG 8 1_555 B DC 4 1_555 -0.687 -0.595 3.291 -2.651 5.042 33.304 -1.841 0.753 3.213 8.719 4.584 33.775 7 AA_DA7DG8:DC15DT16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DG 8 1_555 B DC 4 1_555 A DA 9 1_555 B DT 3 1_555 0.179 -0.820 2.744 -6.287 3.729 34.795 -1.792 -1.048 2.575 6.152 10.371 35.531 8 AA_DG8DA9:DT14DC15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DA 9 1_555 B DT 3 1_555 A DA 10 1_555 B DT 2 1_555 -0.226 -0.776 3.215 1.092 -2.710 34.935 -0.886 0.538 3.256 -4.505 -1.814 35.053 9 AA_DA9DA10:DT13DT14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DA 10 1_555 B DT 2 1_555 A DG 11 1_555 B DC 1 1_555 -0.387 -0.692 3.486 0.539 -5.343 30.003 -0.161 0.854 3.545 -10.217 -1.031 30.469 10 AA_DA10DG11:DC12DT13_BB A 10 ? B 13 ? A 11 ? B 12 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.field_strength 500 # _atom_sites.entry_id 1K5E _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_