HEADER TRANSCRIPTION 18-OCT-01 1K74 TITLE THE 2.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF TITLE 2 THE HUMAN PPARGAMMA AND RXRALPHA LIGAND BINDING DOMAINS RESPECTIVELY TITLE 3 BOUND WITH GW409544 AND 9-CIS RETINOIC ACID AND CO-ACTIVATOR TITLE 4 PEPTIDES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN - RESIDUES 225 - 462; COMPND 5 SYNONYM: RXRALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; COMPND 9 CHAIN: D; COMPND 10 FRAGMENT: LIGAND BINDING DOMAIN RESIDUES - 206 - 477; COMPND 11 SYNONYM: PPARGAMMA; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: STEROID RECEPTOR COACTIVATOR; COMPND 15 CHAIN: B, E; COMPND 16 FRAGMENT: SRC-1 PEPTIDE; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PACYC184; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR: PRSET; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: CHEMICALLY SYNTHESIZED 25MER PORTION OF THE HUMAN SOURCE 18 SRC-1 COACTIVATOR PEPTIDE. KEYWDS THE HETERODIMER OF THE NUCLEAR RECEPTOR LIGAND BINDING DOMAINS OF KEYWDS 2 RXRALPHA AND PPARGAMMA BOUND RESPECTIVELY WITH 9-CIS RETINOIC ACID KEYWDS 3 AND GW409544 AND COACTIVATOR PEPTIDES, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR H.E.XU,M.H.LAMBERT,V.G.MONTANA,L.B.MOORE,J.L.COLLINS,J.A.OPLINGER, AUTHOR 2 S.A.KLIEWER,R.T.GAMPE JR.,D.D.MCKEE,J.T.MOORE,T.M.WILLSON REVDAT 4 07-FEB-24 1K74 1 REMARK SEQADV REVDAT 3 26-DEC-12 1K74 1 HET HETNAM VERSN REVDAT 2 24-FEB-09 1K74 1 VERSN REVDAT 1 05-DEC-01 1K74 0 JRNL AUTH H.E.XU,M.H.LAMBERT,V.G.MONTANA,K.D.PLUNKET,L.B.MOORE, JRNL AUTH 2 J.L.COLLINS,J.A.OPLINGER,S.A.KLIEWER,R.T.GAMPE JR., JRNL AUTH 3 D.D.MCKEE,J.T.MOORE,T.M.WILLSON JRNL TITL STRUCTURAL DETERMINANTS OF LIGAND BINDING SELECTIVITY JRNL TITL 2 BETWEEN THE PEROXISOME PROLIFERATOR-ACTIVATED RECEPTORS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 13919 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11698662 JRNL DOI 10.1073/PNAS.241410198 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2347 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 23791 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000014643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24986 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4K, NASCN, ETHYLENE GLYCOL, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.31000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.43000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 107.43000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.31000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 225 REMARK 465 ALA A 226 REMARK 465 HIS A 459 REMARK 465 GLN A 460 REMARK 465 MET A 461 REMARK 465 THR A 462 REMARK 465 MET D 195 REMARK 465 LYS D 196 REMARK 465 LYS D 197 REMARK 465 GLY D 198 REMARK 465 HIS D 199 REMARK 465 HIS D 200 REMARK 465 HIS D 201 REMARK 465 HIS D 202 REMARK 465 HIS D 203 REMARK 465 HIS D 204 REMARK 465 GLY D 205 REMARK 465 CYS B 619 REMARK 465 PRO B 620 REMARK 465 SER B 621 REMARK 465 SER B 622 REMARK 465 HIS B 623 REMARK 465 SER B 624 REMARK 465 SER B 625 REMARK 465 LEU B 626 REMARK 465 THR B 627 REMARK 465 GLU B 628 REMARK 465 ARG B 629 REMARK 465 GLY B 640 REMARK 465 SER B 641 REMARK 465 PRO B 642 REMARK 465 SER B 643 REMARK 465 CYS E 676 REMARK 465 PRO E 677 REMARK 465 SER E 678 REMARK 465 SER E 679 REMARK 465 HIS E 680 REMARK 465 SER E 681 REMARK 465 SER E 682 REMARK 465 LEU E 683 REMARK 465 THR E 684 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 LYS A 245 CB CG CD CE NZ REMARK 470 THR A 246 CB OG1 CG2 REMARK 470 GLU A 247 CB CG CD OE1 OE2 REMARK 470 THR A 248 CB OG1 CG2 REMARK 470 TYR A 249 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 249 OH REMARK 470 VAL A 250 CB CG1 CG2 REMARK 470 GLU A 251 CB CG CD OE1 OE2 REMARK 470 ALA A 252 CB REMARK 470 ASN A 253 CB CG OD1 ND2 REMARK 470 MET A 254 CB CG SD CE REMARK 470 LEU A 256 CB CG CD1 CD2 REMARK 470 ASN A 257 CB CG OD1 ND2 REMARK 470 PRO A 258 CB CG CD REMARK 470 SER A 259 CB OG REMARK 470 SER A 260 CB OG REMARK 470 PRO A 261 CB CG CD REMARK 470 ASN A 262 CB CG OD1 ND2 REMARK 470 ASP A 263 CB CG OD1 OD2 REMARK 470 PRO D 206 CG CD REMARK 470 GLU D 259 CG CD OE1 OE2 REMARK 470 LYS D 261 CG CD CE NZ REMARK 470 ILE D 262 CG1 CG2 CD1 REMARK 470 GLN D 271 CG CD OE1 NE2 REMARK 470 LYS B 631 CG CD CE NZ REMARK 470 LYS E 688 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN D 273 N LYS D 275 2.06 REMARK 500 O GLY D 258 N ASP D 260 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR D 250 O PRO D 269 4455 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 244 C - N - CA ANGL. DEV. = 22.6 DEGREES REMARK 500 PRO A 244 C - N - CD ANGL. DEV. = -23.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 228 44.33 -104.97 REMARK 500 ASP A 229 -64.88 76.53 REMARK 500 GLU A 243 -131.50 -68.73 REMARK 500 PRO A 244 -143.11 37.08 REMARK 500 LYS A 245 47.57 89.90 REMARK 500 THR A 246 154.42 88.12 REMARK 500 GLU A 247 -59.28 69.88 REMARK 500 THR A 248 0.47 -62.05 REMARK 500 TYR A 249 57.08 -110.22 REMARK 500 VAL A 250 -14.24 -161.33 REMARK 500 ALA A 252 51.77 -149.91 REMARK 500 MET A 254 6.45 -168.61 REMARK 500 LEU A 256 -144.34 91.01 REMARK 500 ASN A 257 91.52 121.71 REMARK 500 SER A 259 -115.80 94.51 REMARK 500 SER A 260 33.60 125.07 REMARK 500 ASP A 263 115.83 174.79 REMARK 500 HIS A 288 -13.10 79.00 REMARK 500 ASP A 322 70.90 23.70 REMARK 500 ALA A 344 -63.59 70.65 REMARK 500 LEU A 441 38.88 -73.18 REMARK 500 ILE A 442 -24.99 -158.31 REMARK 500 ASP A 444 96.10 64.78 REMARK 500 THR A 445 81.30 57.70 REMARK 500 PRO A 446 -175.56 -47.70 REMARK 500 ILE A 447 -158.94 -109.58 REMARK 500 PHE A 450 -62.33 97.11 REMARK 500 ALA A 457 141.58 73.26 REMARK 500 ASP D 243 57.92 161.47 REMARK 500 LYS D 244 121.80 66.29 REMARK 500 TYR D 250 -4.19 -140.57 REMARK 500 GLU D 259 65.52 -25.07 REMARK 500 ILE D 262 26.61 86.69 REMARK 500 LYS D 263 -123.69 -145.10 REMARK 500 LYS D 265 -127.48 -74.82 REMARK 500 ILE D 267 88.02 -52.17 REMARK 500 THR D 268 -51.29 -122.54 REMARK 500 GLN D 271 159.08 104.68 REMARK 500 GLU D 272 83.54 -155.97 REMARK 500 GLN D 273 -99.31 58.19 REMARK 500 SER D 274 -47.88 41.48 REMARK 500 LYS D 275 48.79 -140.76 REMARK 500 GLU D 276 152.77 79.89 REMARK 500 ARG D 280 -73.72 -49.03 REMARK 500 SER D 342 72.54 75.66 REMARK 500 GLU D 343 8.50 53.01 REMARK 500 LYS D 358 -124.89 33.24 REMARK 500 ASP D 462 54.13 -97.87 REMARK 500 SER D 464 109.47 53.67 REMARK 500 LEU D 476 -115.91 -96.85 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9CR A 463 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 544 D 478 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FM6 RELATED DB: PDB REMARK 900 RELATED ID: 1FM9 RELATED DB: PDB REMARK 900 RELATED ID: 1K7L RELATED DB: PDB DBREF 1K74 A 225 462 UNP P19793 RXRA_HUMAN 225 462 DBREF 1K74 D 206 477 UNP P37231 PPARG_HUMAN 234 505 DBREF 1K74 B 619 643 UNP O43792 O43792_TOBAC 675 701 DBREF 1K74 E 676 700 UNP O43792 O43792_TOBAC 675 701 SEQADV 1K74 MET D 195 UNP P37231 EXPRESSION TAG SEQADV 1K74 LYS D 196 UNP P37231 EXPRESSION TAG SEQADV 1K74 LYS D 197 UNP P37231 EXPRESSION TAG SEQADV 1K74 GLY D 198 UNP P37231 EXPRESSION TAG SEQADV 1K74 HIS D 199 UNP P37231 EXPRESSION TAG SEQADV 1K74 HIS D 200 UNP P37231 EXPRESSION TAG SEQADV 1K74 HIS D 201 UNP P37231 EXPRESSION TAG SEQADV 1K74 HIS D 202 UNP P37231 EXPRESSION TAG SEQADV 1K74 HIS D 203 UNP P37231 EXPRESSION TAG SEQADV 1K74 HIS D 204 UNP P37231 EXPRESSION TAG SEQADV 1K74 GLY D 205 UNP P37231 EXPRESSION TAG SEQRES 1 A 238 SER ALA ASN GLU ASP MET PRO VAL GLU ARG ILE LEU GLU SEQRES 2 A 238 ALA GLU LEU ALA VAL GLU PRO LYS THR GLU THR TYR VAL SEQRES 3 A 238 GLU ALA ASN MET GLY LEU ASN PRO SER SER PRO ASN ASP SEQRES 4 A 238 PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS GLN LEU SEQRES 5 A 238 PHE THR LEU VAL GLU TRP ALA LYS ARG ILE PRO HIS PHE SEQRES 6 A 238 SER GLU LEU PRO LEU ASP ASP GLN VAL ILE LEU LEU ARG SEQRES 7 A 238 ALA GLY TRP ASN GLU LEU LEU ILE ALA SER PHE SER HIS SEQRES 8 A 238 ARG SER ILE ALA VAL LYS ASP GLY ILE LEU LEU ALA THR SEQRES 9 A 238 GLY LEU HIS VAL HIS ARG ASN SER ALA HIS SER ALA GLY SEQRES 10 A 238 VAL GLY ALA ILE PHE ASP ARG VAL LEU THR GLU LEU VAL SEQRES 11 A 238 SER LYS MET ARG ASP MET GLN MET ASP LYS THR GLU LEU SEQRES 12 A 238 GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO ASP SER SEQRES 13 A 238 LYS GLY LEU SER ASN PRO ALA GLU VAL GLU ALA LEU ARG SEQRES 14 A 238 GLU LYS VAL TYR ALA SER LEU GLU ALA TYR CYS LYS HIS SEQRES 15 A 238 LYS TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS LEU LEU SEQRES 16 A 238 LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU LYS CYS SEQRES 17 A 238 LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY ASP THR SEQRES 18 A 238 PRO ILE ASP THR PHE LEU MET GLU MET LEU GLU ALA PRO SEQRES 19 A 238 HIS GLN MET THR SEQRES 1 D 283 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS GLY PRO GLU SEQRES 2 D 283 SER ALA ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR ASP SEQRES 3 D 283 SER TYR ILE LYS SER PHE PRO LEU THR LYS ALA LYS ALA SEQRES 4 D 283 ARG ALA ILE LEU THR GLY LYS THR THR ASP LYS SER PRO SEQRES 5 D 283 PHE VAL ILE TYR ASP MET ASN SER LEU MET MET GLY GLU SEQRES 6 D 283 ASP LYS ILE LYS PHE LYS HIS ILE THR PRO LEU GLN GLU SEQRES 7 D 283 GLN SER LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY CYS SEQRES 8 D 283 GLN PHE ARG SER VAL GLU ALA VAL GLN GLU ILE THR GLU SEQRES 9 D 283 TYR ALA LYS SER ILE PRO GLY PHE VAL ASN LEU ASP LEU SEQRES 10 D 283 ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS GLU SEQRES 11 D 283 ILE ILE TYR THR MET LEU ALA SER LEU MET ASN LYS ASP SEQRES 12 D 283 GLY VAL LEU ILE SER GLU GLY GLN GLY PHE MET THR ARG SEQRES 13 D 283 GLU PHE LEU LYS SER LEU ARG LYS PRO PHE GLY ASP PHE SEQRES 14 D 283 MET GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN ALA SEQRES 15 D 283 LEU GLU LEU ASP ASP SER ASP LEU ALA ILE PHE ILE ALA SEQRES 16 D 283 VAL ILE ILE LEU SER GLY ASP ARG PRO GLY LEU LEU ASN SEQRES 17 D 283 VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU GLN SEQRES 18 D 283 ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SER SEQRES 19 D 283 SER GLN LEU PHE ALA LYS LEU LEU GLN LYS MET THR ASP SEQRES 20 D 283 LEU ARG GLN ILE VAL THR GLU HIS VAL GLN LEU LEU GLN SEQRES 21 D 283 VAL ILE LYS LYS THR GLU THR ASP MET SER LEU HIS PRO SEQRES 22 D 283 LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 B 25 CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS LYS SEQRES 2 B 25 ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER SEQRES 1 E 25 CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS LYS SEQRES 2 E 25 ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER HET 9CR A 463 22 HET 544 D 478 38 HETNAM 9CR (9CIS)-RETINOIC ACID HETNAM 544 2-(1-METHYL-3-OXO-3-PHENYL-PROPYLAMINO)-3-{4-[2-(5- HETNAM 2 544 METHYL-2-PHENYL-OXAZOL-4-YL)-ETHOXY]-PHENYL}-PROPIONIC HETNAM 3 544 ACID HETSYN 544 GW409544 FORMUL 5 9CR C20 H28 O2 FORMUL 6 544 C31 H30 N2 O5 FORMUL 7 HOH *208(H2 O) HELIX 1 1 PRO A 231 VAL A 242 1 12 HELIX 2 2 ASP A 263 ARG A 285 1 23 HELIX 3 3 HIS A 288 LEU A 292 5 5 HELIX 4 4 PRO A 293 SER A 317 1 25 HELIX 5 5 ILE A 318 VAL A 320 5 3 HELIX 6 6 ARG A 334 ALA A 340 1 7 HELIX 7 7 ALA A 344 LEU A 353 1 10 HELIX 8 8 LEU A 353 MET A 360 1 8 HELIX 9 9 ASP A 363 PHE A 376 1 14 HELIX 10 10 ASN A 385 TYR A 408 1 24 HELIX 11 11 GLY A 413 LEU A 420 1 8 HELIX 12 12 ARG A 421 PHE A 437 1 17 HELIX 13 13 PHE A 450 LEU A 455 1 6 HELIX 14 14 GLU D 207 PHE D 226 1 20 HELIX 15 15 THR D 229 THR D 238 1 10 HELIX 16 16 ASP D 251 GLY D 258 1 8 HELIX 17 17 GLU D 276 LYS D 301 1 26 HELIX 18 18 GLY D 305 LEU D 309 5 5 HELIX 19 19 ASP D 310 LEU D 333 1 24 HELIX 20 20 ARG D 350 LEU D 356 1 7 HELIX 21 21 ARG D 357 ASP D 362 5 6 HELIX 22 22 PHE D 363 ALA D 376 1 14 HELIX 23 23 ASP D 380 LEU D 393 1 14 HELIX 24 24 ASN D 402 HIS D 425 1 24 HELIX 25 25 GLN D 430 GLU D 460 1 31 HELIX 26 26 HIS D 466 LYS D 474 1 9 HELIX 27 27 HIS B 630 GLN B 638 1 9 HELIX 28 28 HIS E 687 GLU E 696 1 10 SHEET 1 A 2 GLY A 323 LEU A 325 0 SHEET 2 A 2 HIS A 331 HIS A 333 -1 O VAL A 332 N ILE A 324 SHEET 1 B 4 PHE D 247 ILE D 249 0 SHEET 2 B 4 GLY D 346 THR D 349 1 O PHE D 347 N ILE D 249 SHEET 3 B 4 GLY D 338 ILE D 341 -1 N VAL D 339 O MET D 348 SHEET 4 B 4 MET D 334 ASN D 335 -1 N ASN D 335 O GLY D 338 CISPEP 1 GLU A 243 PRO A 244 0 1.10 SITE 1 AC1 12 ILE A 268 ALA A 271 ALA A 272 GLN A 275 SITE 2 AC1 12 TRP A 305 PHE A 313 ARG A 316 LEU A 326 SITE 3 AC1 12 ALA A 327 CYS A 432 HIS A 435 LEU A 436 SITE 1 AC2 15 ARG D 280 ILE D 281 PHE D 282 CYS D 285 SITE 2 AC2 15 SER D 289 HIS D 323 LEU D 330 ILE D 341 SITE 3 AC2 15 PHE D 360 PHE D 363 MET D 364 HIS D 449 SITE 4 AC2 15 TYR D 473 HOH D 511 HOH D 527 CRYST1 46.620 55.100 214.860 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021450 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004654 0.00000