HEADER SIGNALING PROTEIN 25-OCT-01 1K8R TITLE CRYSTAL STRUCTURE OF RAS-BRY2RBD COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING PROTEIN P21/H-RAS-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GTP-BINDING/CATALYTIC DOMAIN, RESIDUES 1-166; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN KINASE BYR2; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RAS BINDING DOMAIN (RBD), RESIDUES 71-180; COMPND 10 EC: 2.7.1.-; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS OR HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CK600K; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 13 ORGANISM_COMMON: FISSION YEAST; SOURCE 14 ORGANISM_TAXID: 4896; SOURCE 15 GENE: BYR2 OR STE8 OR SPBC1D7.05; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS SIGNAL TRANSDUCTION, CANCER, GTPASE, UBIQUITIN FOLD, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SCHEFFZEK,P.GRUENEWALD,S.WOHLGEMUTH,W.KABSCH,H.TU,M.WIGLER, AUTHOR 2 A.WITTINGHOFER,C.HERRMANN REVDAT 4 16-AUG-23 1K8R 1 REMARK LINK REVDAT 3 24-FEB-09 1K8R 1 VERSN REVDAT 2 01-APR-03 1K8R 1 JRNL REVDAT 1 13-MAR-02 1K8R 0 JRNL AUTH K.SCHEFFZEK,P.GRUNEWALD,S.WOHLGEMUTH,W.KABSCH,H.TU,M.WIGLER, JRNL AUTH 2 A.WITTINGHOFER,C.HERRMANN JRNL TITL THE RAS-BYR2RBD COMPLEX: STRUCTURAL BASIS FOR RAS EFFECTOR JRNL TITL 2 RECOGNITION IN YEAST. JRNL REF STRUCTURE V. 9 1043 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11709168 JRNL DOI 10.1016/S0969-2126(01)00674-8 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 860 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1253 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1979 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 25.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.55 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RESIDUES 127-139 AND 166-180 OF BYR2 ARE ILL DEFINED REMARK 3 IN ELECTRON DENSITY AND ARE NOT INCLUDED IN THE MODEL REMARK 4 REMARK 4 1K8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000014701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-96 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8526 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : 0.13900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 5P21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, PH 8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 69.51500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.13450 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.60000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 69.51500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 40.13450 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.60000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 69.51500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 40.13450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.60000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 69.51500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 40.13450 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.60000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 69.51500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 40.13450 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.60000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 69.51500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 40.13450 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.60000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 80.26901 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 75.20000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 80.26901 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 75.20000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 80.26901 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 75.20000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 80.26901 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.20000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 80.26901 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 75.20000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 80.26901 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 75.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 127 REMARK 465 PHE B 128 REMARK 465 LYS B 129 REMARK 465 GLN B 130 REMARK 465 ILE B 131 REMARK 465 CYS B 132 REMARK 465 PHE B 133 REMARK 465 ASN B 134 REMARK 465 SER B 135 REMARK 465 SER B 136 REMARK 465 SER B 137 REMARK 465 PRO B 138 REMARK 465 GLU B 139 REMARK 465 LEU B 166 REMARK 465 ALA B 167 REMARK 465 GLN B 168 REMARK 465 PRO B 169 REMARK 465 ALA B 170 REMARK 465 ALA B 171 REMARK 465 LEU B 172 REMARK 465 SER B 173 REMARK 465 SER B 174 REMARK 465 GLN B 175 REMARK 465 SER B 176 REMARK 465 SER B 177 REMARK 465 LEU B 178 REMARK 465 SER B 179 REMARK 465 PRO B 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 67 CG SD CE REMARK 470 ILE B 120 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 79 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 24 -77.26 -81.61 REMARK 500 HIS A 27 142.89 -178.62 REMARK 500 GLU A 37 118.50 -175.42 REMARK 500 SER A 65 -83.41 -54.90 REMARK 500 ALA A 66 -59.36 -10.84 REMARK 500 ARG A 123 95.92 -164.60 REMARK 500 GLN A 165 1.99 -69.13 REMARK 500 ALA B 77 -178.97 -172.81 REMARK 500 CYS B 78 51.43 38.56 REMARK 500 ASN B 79 -126.89 76.15 REMARK 500 GLN B 81 136.50 -21.77 REMARK 500 ASP B 90 92.88 -64.49 REMARK 500 SER B 103 46.96 79.70 REMARK 500 ASP B 106 125.86 49.30 REMARK 500 ALA B 107 28.15 -77.80 REMARK 500 SER B 117 -67.13 52.56 REMARK 500 SER B 118 50.18 -147.79 REMARK 500 ARG B 119 141.92 176.37 REMARK 500 GLU B 149 -73.34 -59.29 REMARK 500 LYS B 150 78.76 -111.32 REMARK 500 PRO B 151 50.55 -67.80 REMARK 500 SER B 154 171.66 -56.53 REMARK 500 GLU B 163 102.42 -53.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 168 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 53.6 REMARK 620 3 ASP A 57 OD1 85.3 108.1 REMARK 620 4 THR A 58 O 154.2 104.8 89.5 REMARK 620 5 GNP A 167 O2B 53.7 86.7 115.5 148.2 REMARK 620 6 GNP A 167 O2G 78.2 55.5 161.8 101.9 60.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C1Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAP. GMPPNP IN COMPLEX WITH THE RAS- BINDING- REMARK 900 DOMAIN OF C-RAF1 KINASE (RAFRBD). REMARK 900 RELATED ID: 1LFD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACTIVE RAS PROTEIN COMPLEXED WITH THE RAS- REMARK 900 INTERACTING DOMAIN OF RALGDS REMARK 900 RELATED ID: 1HE8 RELATED DB: PDB REMARK 900 RAS G12V - 3-KINASE COMPLEX DBREF 1K8R A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 1K8R B 71 180 UNP P28829 BYR2_SCHPO 71 180 SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 110 CYS ILE LEU ARG PHE ILE ALA CYS ASN GLY GLN THR ARG SEQRES 2 B 110 ALA VAL GLN SER ARG GLY ASP TYR GLN LYS THR LEU ALA SEQRES 3 B 110 ILE ALA LEU LYS LYS PHE SER LEU GLU ASP ALA SER LYS SEQRES 4 B 110 PHE ILE VAL CYS VAL SER GLN SER SER ARG ILE LYS LEU SEQRES 5 B 110 ILE THR GLU GLU GLU PHE LYS GLN ILE CYS PHE ASN SER SEQRES 6 B 110 SER SER PRO GLU ARG ASP ARG LEU ILE ILE VAL PRO LYS SEQRES 7 B 110 GLU LYS PRO CYS PRO SER PHE GLU ASP LEU ARG ARG SER SEQRES 8 B 110 TRP GLU ILE GLU LEU ALA GLN PRO ALA ALA LEU SER SER SEQRES 9 B 110 GLN SER SER LEU SER PRO HET MG A 168 1 HET GNP A 167 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 3 MG MG 2+ FORMUL 4 GNP C10 H17 N6 O13 P3 HELIX 1 1 GLY A 15 GLN A 25 1 11 HELIX 2 2 GLN A 61 ALA A 66 5 6 HELIX 3 3 MET A 67 THR A 74 1 8 HELIX 4 4 ASN A 86 ASP A 92 1 7 HELIX 5 5 ASP A 92 LYS A 104 1 13 HELIX 6 6 GLU A 126 GLY A 138 1 13 HELIX 7 7 GLY A 151 GLN A 165 1 15 HELIX 8 8 ASP B 90 SER B 103 1 14 HELIX 9 9 SER B 154 SER B 161 1 8 SHEET 1 A11 TYR A 141 GLU A 143 0 SHEET 2 A11 MET A 111 ASN A 116 1 N GLY A 115 O ILE A 142 SHEET 3 A11 GLY A 77 ALA A 83 1 N CYS A 80 O VAL A 114 SHEET 4 A11 THR A 2 GLY A 10 1 N VAL A 9 O VAL A 81 SHEET 5 A11 GLU A 49 ASP A 57 1 O LEU A 56 N LEU A 6 SHEET 6 A11 ASP A 38 ILE A 46 -1 N ASP A 38 O ASP A 57 SHEET 7 A11 THR B 82 GLN B 86 -1 O THR B 82 N SER A 39 SHEET 8 A11 ILE B 72 ILE B 76 -1 N PHE B 75 O ARG B 83 SHEET 9 A11 LEU B 143 PRO B 147 1 O LEU B 143 N ILE B 76 SHEET 10 A11 PHE B 110 SER B 115 -1 N ILE B 111 O VAL B 146 SHEET 11 A11 ILE B 120 LEU B 122 -1 O LYS B 121 N VAL B 114 LINK OG SER A 17 MG MG A 168 1555 1555 2.49 LINK OG1 THR A 35 MG MG A 168 1555 1555 2.97 LINK OD1 ASP A 57 MG MG A 168 1555 1555 3.08 LINK O THR A 58 MG MG A 168 1555 1555 2.82 LINK O2B GNP A 167 MG MG A 168 1555 1555 2.98 LINK O2G GNP A 167 MG MG A 168 1555 1555 2.80 SITE 1 AC1 6 LYS A 16 SER A 17 THR A 35 ASP A 57 SITE 2 AC1 6 THR A 58 GNP A 167 SITE 1 AC2 22 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC2 22 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC2 22 ASP A 30 GLU A 31 TYR A 32 PRO A 34 SITE 4 AC2 22 THR A 35 GLY A 60 ASN A 116 LYS A 117 SITE 5 AC2 22 ASP A 119 LEU A 120 SER A 145 ALA A 146 SITE 6 AC2 22 LYS A 147 MG A 168 CRYST1 139.030 139.030 112.800 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007193 0.004153 0.000000 0.00000 SCALE2 0.000000 0.008305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008865 0.00000