HEADER HYDROLASE 31-OCT-01 1K9Z TITLE THE PAPASE HAL2P COMPLEXED WITH ZINC IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOTOLERANCE PROTEIN HAL2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAL2P, 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE, PHOSPHOADENYLATE COMPND 5 3'-NUCLEOTIDASE, 3'-PHOSPHOADENYLYLSULFATE 3'-PHOSPHATASE; COMPND 6 EC: 3.1.3.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HAL2; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: RS1051; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: MULTI-COPY PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRS-421-HAL2 KEYWDS NUCLEOTIDASE, SALT TOLERANCE, INOSITOL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PATEL,A.ALBERT,T.L.BLUNDELL REVDAT 3 16-AUG-23 1K9Z 1 REMARK LINK REVDAT 2 24-FEB-09 1K9Z 1 VERSN REVDAT 1 07-NOV-01 1K9Z 0 JRNL AUTH S.PATEL,A.ALBERT,T.L.BLUNDELL JRNL TITL HAL2P: ION SELECTIVITY AND IMPLICATIONS ON INHIBITION JRNL TITL 2 MECHANISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 50493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2583 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2711 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.873 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-01. REMARK 100 THE DEPOSITION ID IS D_1000014745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : SI 111 & SI 220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 34.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1QGX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG5000 MME, 0.1 M SODIUM REMARK 280 ACETATE, 5 MM BETA-MERCAPTOETHANOL, 0.1 M MES. (CRYSTALS WERE REMARK 280 SOAKED IN MOTHER LIQUOR CONTAINING 0.5 M ZINC CHLORIDE FOR 5 REMARK 280 HOURS.) , PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.67950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 356 REMARK 465 ALA A 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CB CG CD CE NZ REMARK 470 ASP A 33 CB CG OD1 OD2 REMARK 470 LYS A 116 CE NZ REMARK 470 LYS A 135 CD CE NZ REMARK 470 LYS A 226 CB CG CD CE NZ REMARK 470 ASP A 227 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 31 O HOH A 706 1.99 REMARK 500 OE1 GLU A 192 O HOH A 521 2.05 REMARK 500 O HIS A 241 O HOH A 519 2.13 REMARK 500 OD2 ASP A 350 O HOH A 520 2.18 REMARK 500 N ALA A 2 OE2 GLU A 4 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LYS A 291 CD - CE - NZ ANGL. DEV. = -16.8 DEGREES REMARK 500 LYS A 291 CD - CE - NZ ANGL. DEV. = -16.8 DEGREES REMARK 500 ARG A 324 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 30.23 86.31 REMARK 500 GLU A 154 -154.07 -111.78 REMARK 500 PHE A 194 42.59 -153.96 REMARK 500 ASP A 213 -82.69 -91.32 REMARK 500 SER A 264 171.78 87.79 REMARK 500 GLN A 265 1.00 -69.28 REMARK 500 MET A 313 -50.96 -129.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 27 OE2 REMARK 620 2 GLU A 89 OE2 77.6 REMARK 620 3 HOH A 653 O 153.6 126.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 72 OE2 REMARK 620 2 HOH A 502 O 86.3 REMARK 620 3 HOH A 503 O 94.7 174.6 REMARK 620 4 HOH A 517 O 78.9 89.4 85.6 REMARK 620 5 HOH A 518 O 101.8 97.1 87.9 173.5 REMARK 620 6 HOH A 793 O 162.1 82.7 95.0 86.9 93.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 72 OE1 REMARK 620 2 ASP A 142 OD1 87.2 REMARK 620 3 ILE A 144 O 169.1 84.4 REMARK 620 4 HOH A 518 O 97.8 155.1 92.8 REMARK 620 5 HOH A 794 O 88.5 101.8 86.4 102.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 131 OE1 REMARK 620 2 HOH A 522 O 96.9 REMARK 620 3 HOH A 620 O 112.9 105.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD2 REMARK 620 2 ASP A 145 OD1 108.8 REMARK 620 3 ASP A 294 OD1 99.6 107.2 REMARK 620 4 HOH A 505 O 84.4 166.7 71.2 REMARK 620 5 HOH A 803 O 169.6 73.3 89.2 93.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 191 NE2 REMARK 620 2 HOH A 620 O 137.0 REMARK 620 3 HOH A 729 O 109.9 64.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 221 NE2 REMARK 620 2 HIS A 224 NE2 117.4 REMARK 620 3 HOH A 560 O 103.7 96.8 REMARK 620 4 HOH A 665 O 87.9 91.4 160.6 REMARK 620 5 HOH A 668 O 123.3 116.0 87.4 73.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 235 OE2 REMARK 620 2 HIS A 244 NE2 103.1 REMARK 620 3 HIS A 261 NE2 89.7 99.5 REMARK 620 4 HOH A 613 O 79.5 96.2 162.7 REMARK 620 5 HOH A 720 O 132.3 118.2 104.8 73.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 315 OD2 REMARK 620 2 ASP A 342 OD1 75.0 REMARK 620 3 HOH A 748 O 134.7 109.4 REMARK 620 4 HOH A 786 O 113.5 105.2 108.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QGX RELATED DB: PDB REMARK 900 1QGX IS COMPLEXED WITH TWO MAGNESIUM IONS AND A LITHIUM ION AND REMARK 900 REACTION PRODUCTS AMP AND INORGANIC PHOSPHATE REMARK 900 RELATED ID: 1K9Y RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH MAGNESIUM IONS AND REACTION REMARK 900 PRODUCTS: AMP AND INORGANIC PHOSPHATE REMARK 900 RELATED ID: 1KA0 RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH A SODIUM ION AND THE REACTION REMARK 900 PRODUCT AMP REMARK 900 RELATED ID: 1KA1 RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH CALCIUM AND MAGNESIUM IONS AND REMARK 900 REACTION SUBSTRATE: PAP DBREF 1K9Z A 1 357 UNP P32179 HAL2_YEAST 1 357 SEQRES 1 A 357 MET ALA LEU GLU ARG GLU LEU LEU VAL ALA THR GLN ALA SEQRES 2 A 357 VAL ARG LYS ALA SER LEU LEU THR LYS ARG ILE GLN SER SEQRES 3 A 357 GLU VAL ILE SER HIS LYS ASP SER THR THR ILE THR LYS SEQRES 4 A 357 ASN ASP ASN SER PRO VAL THR THR GLY ASP TYR ALA ALA SEQRES 5 A 357 GLN THR ILE ILE ILE ASN ALA ILE LYS SER ASN PHE PRO SEQRES 6 A 357 ASP ASP LYS VAL VAL GLY GLU GLU SER SER SER GLY LEU SEQRES 7 A 357 SER ASP ALA PHE VAL SER GLY ILE LEU ASN GLU ILE LYS SEQRES 8 A 357 ALA ASN ASP GLU VAL TYR ASN LYS ASN TYR LYS LYS ASP SEQRES 9 A 357 ASP PHE LEU PHE THR ASN ASP GLN PHE PRO LEU LYS SER SEQRES 10 A 357 LEU GLU ASP VAL ARG GLN ILE ILE ASP PHE GLY ASN TYR SEQRES 11 A 357 GLU GLY GLY ARG LYS GLY ARG PHE TRP CYS LEU ASP PRO SEQRES 12 A 357 ILE ASP GLY THR LYS GLY PHE LEU ARG GLY GLU GLN PHE SEQRES 13 A 357 ALA VAL CYS LEU ALA LEU ILE VAL ASP GLY VAL VAL GLN SEQRES 14 A 357 LEU GLY CYS ILE GLY CYS PRO ASN LEU VAL LEU SER SER SEQRES 15 A 357 TYR GLY ALA GLN ASP LEU LYS GLY HIS GLU SER PHE GLY SEQRES 16 A 357 TYR ILE PHE ARG ALA VAL ARG GLY LEU GLY ALA PHE TYR SEQRES 17 A 357 SER PRO SER SER ASP ALA GLU SER TRP THR LYS ILE HIS SEQRES 18 A 357 VAL ARG HIS LEU LYS ASP THR LYS ASP MET ILE THR LEU SEQRES 19 A 357 GLU GLY VAL GLU LYS GLY HIS SER SER HIS ASP GLU GLN SEQRES 20 A 357 THR ALA ILE LYS ASN LYS LEU ASN ILE SER LYS SER LEU SEQRES 21 A 357 HIS LEU ASP SER GLN ALA LYS TYR CYS LEU LEU ALA LEU SEQRES 22 A 357 GLY LEU ALA ASP VAL TYR LEU ARG LEU PRO ILE LYS LEU SEQRES 23 A 357 SER TYR GLN GLU LYS ILE TRP ASP HIS ALA ALA GLY ASN SEQRES 24 A 357 VAL ILE VAL HIS GLU ALA GLY GLY ILE HIS THR ASP ALA SEQRES 25 A 357 MET GLU ASP VAL PRO LEU ASP PHE GLY ASN GLY ARG THR SEQRES 26 A 357 LEU ALA THR LYS GLY VAL ILE ALA SER SER GLY PRO ARG SEQRES 27 A 357 GLU LEU HIS ASP LEU VAL VAL SER THR SER CYS ASP VAL SEQRES 28 A 357 ILE GLN SER ARG ASN ALA HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET ZN A 407 1 HET ZN A 408 1 HET ZN A 409 1 HET BME A 501 4 HETNAM ZN ZINC ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 ZN 9(ZN 2+) FORMUL 11 BME C2 H6 O S FORMUL 12 HOH *302(H2 O) HELIX 1 1 LEU A 3 HIS A 31 1 29 HELIX 2 2 HIS A 31 THR A 35 1 5 HELIX 3 3 THR A 47 PHE A 64 1 18 HELIX 4 4 SER A 79 TYR A 101 1 23 HELIX 5 5 SER A 117 PHE A 127 1 11 HELIX 6 6 GLY A 146 ARG A 152 1 7 HELIX 7 7 VAL A 179 GLY A 184 5 6 HELIX 8 8 ASP A 227 ASP A 230 5 4 HELIX 9 9 SER A 243 ASN A 255 1 13 HELIX 10 10 GLN A 265 GLY A 274 1 10 HELIX 11 11 LYS A 291 ASP A 294 5 4 HELIX 12 12 HIS A 295 ALA A 305 1 11 HELIX 13 13 PRO A 337 SER A 354 1 18 SHEET 1 A 2 THR A 36 THR A 38 0 SHEET 2 A 2 PRO A 44 THR A 46 -1 O VAL A 45 N ILE A 37 SHEET 1 B 7 VAL A 69 GLY A 71 0 SHEET 2 B 7 ARG A 137 ASP A 145 1 O TRP A 139 N VAL A 70 SHEET 3 B 7 ALA A 157 VAL A 164 -1 O ALA A 157 N ASP A 145 SHEET 4 B 7 VAL A 167 CYS A 175 -1 O GLN A 169 N LEU A 162 SHEET 5 B 7 TYR A 196 VAL A 201 -1 O TYR A 196 N CYS A 175 SHEET 6 B 7 GLY A 205 PRO A 210 -1 O SER A 209 N ILE A 197 SHEET 7 B 7 THR A 218 ILE A 220 -1 O THR A 218 N TYR A 208 SHEET 1 C 5 LYS A 258 HIS A 261 0 SHEET 2 C 5 ILE A 232 GLU A 235 1 N THR A 233 O LYS A 258 SHEET 3 C 5 VAL A 278 ARG A 281 1 O VAL A 278 N LEU A 234 SHEET 4 C 5 VAL A 331 SER A 334 -1 O ALA A 333 N TYR A 279 SHEET 5 C 5 ILE A 308 THR A 310 -1 N THR A 310 O ILE A 332 LINK SG CYS A 349 S2 BME A 501 1555 1555 1.97 LINK OE2AGLU A 27 ZN ZN A 404 1555 1555 1.79 LINK OE2 GLU A 72 ZN ZN A 401 1555 1555 1.96 LINK OE1 GLU A 72 ZN ZN A 402 1555 1555 2.05 LINK OE2 GLU A 89 ZN ZN A 404 1555 1555 1.91 LINK OE1 GLU A 131 ZN ZN A 408 1555 1555 1.78 LINK OD1 ASP A 142 ZN ZN A 402 1555 1555 2.06 LINK OD2 ASP A 142 ZN ZN A 403 1555 1555 1.94 LINK O ILE A 144 ZN ZN A 402 1555 1555 2.16 LINK OD1 ASP A 145 ZN ZN A 403 1555 1555 2.28 LINK NE2 HIS A 191 ZN ZN A 407 1555 1555 2.09 LINK NE2 HIS A 221 ZN ZN A 405 1555 1555 2.05 LINK NE2 HIS A 224 ZN ZN A 405 1555 1555 2.11 LINK OE2 GLU A 235 ZN ZN A 406 1555 1555 2.08 LINK NE2 HIS A 244 ZN ZN A 406 1555 1555 1.72 LINK NE2 HIS A 261 ZN ZN A 406 1555 1555 2.04 LINK OD1 ASP A 294 ZN ZN A 403 1555 1555 2.10 LINK OD2 ASP A 315 ZN ZN A 409 1555 1555 2.26 LINK OD1 ASP A 342 ZN ZN A 409 1555 1555 1.81 LINK ZN ZN A 401 O HOH A 502 1555 1555 2.22 LINK ZN ZN A 401 O HOH A 503 1555 1555 2.08 LINK ZN ZN A 401 O HOH A 517 1555 1555 2.10 LINK ZN ZN A 401 O HOH A 518 1555 1555 1.98 LINK ZN ZN A 401 O HOH A 793 1555 1555 2.15 LINK ZN ZN A 402 O HOH A 518 1555 1555 2.05 LINK ZN ZN A 402 O HOH A 794 1555 1555 2.15 LINK ZN ZN A 403 O HOH A 505 1555 1555 2.49 LINK ZN ZN A 403 O HOH A 803 1555 1555 2.77 LINK ZN ZN A 404 O HOH A 653 1555 1555 2.09 LINK ZN ZN A 405 O HOH A 560 1555 1555 2.13 LINK ZN ZN A 405 O HOH A 665 1555 1555 2.49 LINK ZN ZN A 405 O HOH A 668 1555 1555 2.07 LINK ZN ZN A 406 O HOH A 613 1555 1555 2.35 LINK ZN ZN A 406 O HOH A 720 1555 1555 2.12 LINK ZN ZN A 407 O HOH A 620 1555 1555 2.13 LINK ZN ZN A 407 O HOH A 729 1555 1555 2.51 LINK ZN ZN A 408 O HOH A 522 1555 1565 1.96 LINK ZN ZN A 408 O HOH A 620 1555 1565 2.39 LINK ZN ZN A 409 O HOH A 748 1555 1555 2.04 LINK ZN ZN A 409 O HOH A 786 1555 1555 2.32 CISPEP 1 GLY A 336 PRO A 337 0 3.05 SITE 1 AC1 7 GLU A 72 ZN A 402 HOH A 502 HOH A 503 SITE 2 AC1 7 HOH A 517 HOH A 518 HOH A 793 SITE 1 AC2 6 GLU A 72 ASP A 142 ILE A 144 ZN A 401 SITE 2 AC2 6 HOH A 518 HOH A 794 SITE 1 AC3 6 ASP A 142 ASP A 145 ASP A 294 HOH A 505 SITE 2 AC3 6 HOH A 511 HOH A 803 SITE 1 AC4 4 GLU A 27 GLU A 89 HOH A 566 HOH A 653 SITE 1 AC5 5 HIS A 221 HIS A 224 HOH A 560 HOH A 665 SITE 2 AC5 5 HOH A 668 SITE 1 AC6 5 GLU A 235 HIS A 244 HIS A 261 HOH A 613 SITE 2 AC6 5 HOH A 720 SITE 1 AC7 6 HIS A 191 GLU A 192 ZN A 408 HOH A 620 SITE 2 AC7 6 HOH A 646 HOH A 729 SITE 1 AC8 6 GLU A 131 HIS A 191 ZN A 407 HOH A 522 SITE 2 AC8 6 HOH A 620 HOH A 646 SITE 1 AC9 4 ASP A 315 ASP A 342 HOH A 748 HOH A 786 SITE 1 BC1 3 MET A 313 CYS A 349 GLN A 353 CRYST1 54.682 45.359 71.280 90.00 111.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018288 0.000000 0.007165 0.00000 SCALE2 0.000000 0.022046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015068 0.00000