data_1KB4 # _entry.id 1KB4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1KB4 pdb_00001kb4 10.2210/pdb1kb4/pdb NDB PD0269 ? ? RCSB RCSB014771 ? ? WWPDB D_1000014771 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1KB2 'CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO MOUSE OSTEOPONTIN (SPP) RESPONSE ELEMENT' unspecified PDB 1KB6 'Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response Element' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KB4 _pdbx_database_status.recvd_initial_deposition_date 2001-11-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shaffer, P.L.' 1 'Gewirth, D.T.' 2 # _citation.id primary _citation.title 'Structural basis of VDR-DNA interactions on direct repeat response elements.' _citation.journal_abbrev 'EMBO J.' _citation.journal_volume 21 _citation.page_first 2242 _citation.page_last 2252 _citation.year 2002 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11980721 _citation.pdbx_database_id_DOI 10.1093/emboj/21.9.2242 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shaffer, P.L.' 1 ? primary 'Gewirth, D.T.' 2 ? # _cell.entry_id 1KB4 _cell.length_a 61.50 _cell.length_b 61.50 _cell.length_c 241.97 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KB4 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*AP*CP*AP*GP*GP*TP*CP*AP*CP*GP*AP*AP*GP*GP*TP*CP*A)-3'" 5534.607 1 ? ? ? 'Canonical Direct Repeat with 3 Base Pair Spacer (DR3) Response Element' 2 polymer syn "5'-D(*TP*GP*AP*CP*CP*TP*TP*CP*GP*TP*GP*AP*CP*CP*TP*GP*TP*G)-3'" 5498.551 1 ? ? ? 'Canonical Direct Repeat with 3 Base Pair Spacer (DR3) Response Element' 3 polymer man 'Vitamin D3 Receptor' 12953.305 2 ? ? 'DNA-binding Domain (Residues 16-125)' ? 4 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 5 water nat water 18.015 31 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'VDR, 1,25-DIHYDROXYVITAMIN D3 RECEPTOR' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DA)(DG)(DG)(DT)(DC)(DA)(DC)(DG)(DA)(DA)(DG)(DG)(DT)(DC)(DA)' CACAGGTCACGAAGGTCA C ? 2 polydeoxyribonucleotide no no '(DT)(DG)(DA)(DC)(DC)(DT)(DT)(DC)(DG)(DT)(DG)(DA)(DC)(DC)(DT)(DG)(DT)(DG)' TGACCTTCGTGACCTGTG D ? 3 'polypeptide(L)' no no ;FDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFIL TDEEVQRKREMILKRKEEEALKDSLRPKLS ; ;FDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFIL TDEEVQRKREMILKRKEEEALKDSLRPKLS ; A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DA n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DC n 1 9 DA n 1 10 DC n 1 11 DG n 1 12 DA n 1 13 DA n 1 14 DG n 1 15 DG n 1 16 DT n 1 17 DC n 1 18 DA n 2 1 DT n 2 2 DG n 2 3 DA n 2 4 DC n 2 5 DC n 2 6 DT n 2 7 DT n 2 8 DC n 2 9 DG n 2 10 DT n 2 11 DG n 2 12 DA n 2 13 DC n 2 14 DC n 2 15 DT n 2 16 DG n 2 17 DT n 2 18 DG n 3 1 PHE n 3 2 ASP n 3 3 ARG n 3 4 ASN n 3 5 VAL n 3 6 PRO n 3 7 ARG n 3 8 ILE n 3 9 CYS n 3 10 GLY n 3 11 VAL n 3 12 CYS n 3 13 GLY n 3 14 ASP n 3 15 ARG n 3 16 ALA n 3 17 THR n 3 18 GLY n 3 19 PHE n 3 20 HIS n 3 21 PHE n 3 22 ASN n 3 23 ALA n 3 24 MET n 3 25 THR n 3 26 CYS n 3 27 GLU n 3 28 GLY n 3 29 CYS n 3 30 LYS n 3 31 GLY n 3 32 PHE n 3 33 PHE n 3 34 ARG n 3 35 ARG n 3 36 SER n 3 37 MET n 3 38 LYS n 3 39 ARG n 3 40 LYS n 3 41 ALA n 3 42 LEU n 3 43 PHE n 3 44 THR n 3 45 CYS n 3 46 PRO n 3 47 PHE n 3 48 ASN n 3 49 GLY n 3 50 ASP n 3 51 CYS n 3 52 ARG n 3 53 ILE n 3 54 THR n 3 55 LYS n 3 56 ASP n 3 57 ASN n 3 58 ARG n 3 59 ARG n 3 60 HIS n 3 61 CYS n 3 62 GLN n 3 63 ALA n 3 64 CYS n 3 65 ARG n 3 66 LEU n 3 67 LYS n 3 68 ARG n 3 69 CYS n 3 70 VAL n 3 71 ASP n 3 72 ILE n 3 73 GLY n 3 74 MET n 3 75 MET n 3 76 LYS n 3 77 GLU n 3 78 PHE n 3 79 ILE n 3 80 LEU n 3 81 THR n 3 82 ASP n 3 83 GLU n 3 84 GLU n 3 85 VAL n 3 86 GLN n 3 87 ARG n 3 88 LYS n 3 89 ARG n 3 90 GLU n 3 91 MET n 3 92 ILE n 3 93 LEU n 3 94 LYS n 3 95 ARG n 3 96 LYS n 3 97 GLU n 3 98 GLU n 3 99 GLU n 3 100 ALA n 3 101 LEU n 3 102 LYS n 3 103 ASP n 3 104 SER n 3 105 LEU n 3 106 ARG n 3 107 PRO n 3 108 LYS n 3 109 LEU n 3 110 SER n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene VDR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11A-VDR-N1-RPLKS _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP VDR_HUMAN 3 ;FDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFIL TDEEVQRKREMILKRKEEEALKDSLRPKLS ; 16 P11473 ? 2 PDB 1KB4 1 ? ? 1KB4 ? 3 PDB 1KB4 2 ? ? 1KB4 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1KB4 A 1 ? 110 ? P11473 16 ? 125 ? 16 125 2 1 1KB4 B 1 ? 110 ? P11473 16 ? 125 ? 216 325 3 2 1KB4 C 1 ? 18 ? 1KB4 401 ? 418 ? 401 418 4 3 1KB4 D 1 ? 18 ? 1KB4 419 ? 436 ? 419 436 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1KB4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.06 _exptl_crystal.density_percent_sol 59.79 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details 'PEG 8000, magnesium chloride, MES, glycerol, DTT, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 8000' ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 MES ? ? ? 1 4 1 glycerol ? ? ? 1 5 1 DTT ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type APS-1 _diffrn_detector.pdbx_collection_date 2001-09-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0332 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0332 # _reflns.entry_id 1KB4 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.8 _reflns.number_obs 12384 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.1000000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.2 _reflns.B_iso_Wilson_estimate 79.8 _reflns.pdbx_redundancy 14.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.3900000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1173 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1KB4 _refine.ls_number_reflns_obs 11200 _refine.ls_number_reflns_all 11200 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 464135.50 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 91.6 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2140000 _refine.ls_R_factor_R_free 0.2720000 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 1124 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 76.0 _refine.aniso_B[1][1] 24.32 _refine.aniso_B[2][2] 24.32 _refine.aniso_B[3][3] -48.64 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.309478 _refine.solvent_model_param_bsol 37.5931 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'TR Half-Complex from PDB Entry 2NLL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD FUNCTION' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1KB4 _refine_analyze.Luzzati_coordinate_error_obs 0.40 _refine_analyze.Luzzati_sigma_a_obs 0.64 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.49 _refine_analyze.Luzzati_sigma_a_free 0.78 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1468 _refine_hist.pdbx_number_atoms_nucleic_acid 732 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 2235 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.31 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.08 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.91 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.54 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.53 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.90 _refine_ls_shell.number_reflns_R_work 828 _refine_ls_shell.R_factor_R_work 0.4720000 _refine_ls_shell.percent_reflns_obs 77.0 _refine_ls_shell.R_factor_R_free 0.4860000 _refine_ls_shell.R_factor_R_free_error 0.054 _refine_ls_shell.percent_reflns_R_free 8.9 _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 5 PARAM_ZN ? 'X-RAY DIFFRACTION' # _struct.entry_id 1KB4 _struct.title 'Crystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response Element' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KB4 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'VDR, NUCLEAR RECEPTOR, PROTEIN-DNA COMPLEX, VITAMIN D, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS C 26 ? ARG C 39 ? CYS A 41 ARG A 54 1 ? 14 HELX_P HELX_P2 2 ASN C 57 ? HIS C 60 ? ASN A 72 HIS A 75 5 ? 4 HELX_P HELX_P3 3 CYS C 61 ? ILE C 72 ? CYS A 76 ILE A 87 1 ? 12 HELX_P HELX_P4 4 MET C 75 ? ILE C 79 ? MET A 90 ILE A 94 5 ? 5 HELX_P HELX_P5 5 THR C 81 ? ARG C 89 ? THR A 96 ARG A 104 1 ? 9 HELX_P HELX_P6 6 CYS D 26 ? LYS D 40 ? CYS B 241 LYS B 255 1 ? 15 HELX_P HELX_P7 7 ASP D 56 ? HIS D 60 ? ASP B 271 HIS B 275 5 ? 5 HELX_P HELX_P8 8 CYS D 61 ? GLY D 73 ? CYS B 276 GLY B 288 1 ? 13 HELX_P HELX_P9 9 MET D 75 ? ILE D 79 ? MET B 290 ILE B 294 5 ? 5 HELX_P HELX_P10 10 THR D 81 ? MET D 91 ? THR B 296 MET B 306 1 ? 11 HELX_P HELX_P11 11 LYS D 94 ? LYS D 102 ? LYS B 309 LYS B 317 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C CYS 9 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 24 A ZN 150 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc2 metalc ? ? C CYS 12 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 27 A ZN 150 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc3 metalc ? ? C CYS 26 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 41 A ZN 150 1_555 ? ? ? ? ? ? ? 2.458 ? ? metalc4 metalc ? ? C CYS 29 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 44 A ZN 150 1_555 ? ? ? ? ? ? ? 2.361 ? ? metalc5 metalc ? ? C CYS 45 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 60 A ZN 151 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc6 metalc ? ? C CYS 51 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 66 A ZN 151 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc7 metalc ? ? C CYS 61 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 76 A ZN 151 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc8 metalc ? ? C CYS 64 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 79 A ZN 151 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc9 metalc ? ? D CYS 9 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 224 B ZN 350 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc10 metalc ? ? D CYS 12 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 227 B ZN 350 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc11 metalc ? ? D CYS 26 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 241 B ZN 350 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc12 metalc ? ? D CYS 29 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 244 B ZN 350 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc13 metalc ? ? D CYS 45 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 260 B ZN 351 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc14 metalc ? ? D CYS 51 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 266 B ZN 351 1_555 ? ? ? ? ? ? ? 2.374 ? ? metalc15 metalc ? ? D CYS 61 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 276 B ZN 351 1_555 ? ? ? ? ? ? ? 2.495 ? ? metalc16 metalc ? ? D CYS 64 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 279 B ZN 351 1_555 ? ? ? ? ? ? ? 2.347 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 18 N1 ? ? C DC 401 D DG 436 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 18 O6 ? ? C DC 401 D DG 436 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 18 N2 ? ? C DC 401 D DG 436 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 17 N3 ? ? C DA 402 D DT 435 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 17 O4 ? ? C DA 402 D DT 435 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 16 N1 ? ? C DC 403 D DG 434 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 16 O6 ? ? C DC 403 D DG 434 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 16 N2 ? ? C DC 403 D DG 434 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 404 D DT 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 404 D DT 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 14 N3 ? ? C DG 405 D DC 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 14 O2 ? ? C DG 405 D DC 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 14 N4 ? ? C DG 405 D DC 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 13 N3 ? ? C DG 406 D DC 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 13 O2 ? ? C DG 406 D DC 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 13 N4 ? ? C DG 406 D DC 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 407 D DA 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 407 D DA 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 11 N1 ? ? C DC 408 D DG 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 11 O6 ? ? C DC 408 D DG 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 11 N2 ? ? C DC 408 D DG 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 409 D DT 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 409 D DT 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 9 N1 ? ? C DC 410 D DG 427 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 9 O6 ? ? C DC 410 D DG 427 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 9 N2 ? ? C DC 410 D DG 427 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 8 N3 ? ? C DG 411 D DC 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 8 O2 ? ? C DG 411 D DC 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 8 N4 ? ? C DG 411 D DC 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 7 N3 ? ? C DA 412 D DT 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 7 O4 ? ? C DA 412 D DT 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 6 N3 ? ? C DA 413 D DT 424 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 6 O4 ? ? C DA 413 D DT 424 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 5 N3 ? ? C DG 414 D DC 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 5 O2 ? ? C DG 414 D DC 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 5 N4 ? ? C DG 414 D DC 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 4 N3 ? ? C DG 415 D DC 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 4 O2 ? ? C DG 415 D DC 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 4 N4 ? ? C DG 415 D DC 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 3 N1 ? ? C DT 416 D DA 421 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 3 N6 ? ? C DT 416 D DA 421 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 2 N1 ? ? C DC 417 D DG 420 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 2 O6 ? ? C DC 417 D DG 420 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 2 N2 ? ? C DC 417 D DG 420 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DA 18 N1 ? ? ? 1_555 B DT 1 N3 ? ? C DA 418 D DT 419 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DA 18 N6 ? ? ? 1_555 B DT 1 O4 ? ? C DA 418 D DT 419 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE C 19 ? HIS C 20 ? PHE A 34 HIS A 35 A 2 ALA C 23 ? MET C 24 ? ALA A 38 MET A 39 B 1 GLY D 18 ? HIS D 20 ? GLY B 233 HIS B 235 B 2 ALA D 23 ? THR D 25 ? ALA B 238 THR B 240 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS C 20 ? N HIS A 35 O ALA C 23 ? O ALA A 38 B 1 2 N HIS D 20 ? N HIS B 235 O ALA D 23 ? O ALA B 238 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 150 ? 4 'BINDING SITE FOR RESIDUE ZN A 150' AC2 Software A ZN 151 ? 4 'BINDING SITE FOR RESIDUE ZN A 151' AC3 Software B ZN 350 ? 4 'BINDING SITE FOR RESIDUE ZN B 350' AC4 Software B ZN 351 ? 4 'BINDING SITE FOR RESIDUE ZN B 351' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS C 9 ? CYS A 24 . ? 1_555 ? 2 AC1 4 CYS C 12 ? CYS A 27 . ? 1_555 ? 3 AC1 4 CYS C 26 ? CYS A 41 . ? 1_555 ? 4 AC1 4 CYS C 29 ? CYS A 44 . ? 1_555 ? 5 AC2 4 CYS C 45 ? CYS A 60 . ? 1_555 ? 6 AC2 4 CYS C 51 ? CYS A 66 . ? 1_555 ? 7 AC2 4 CYS C 61 ? CYS A 76 . ? 1_555 ? 8 AC2 4 CYS C 64 ? CYS A 79 . ? 1_555 ? 9 AC3 4 CYS D 9 ? CYS B 224 . ? 1_555 ? 10 AC3 4 CYS D 12 ? CYS B 227 . ? 1_555 ? 11 AC3 4 CYS D 26 ? CYS B 241 . ? 1_555 ? 12 AC3 4 CYS D 29 ? CYS B 244 . ? 1_555 ? 13 AC4 4 CYS D 45 ? CYS B 260 . ? 1_555 ? 14 AC4 4 CYS D 51 ? CYS B 266 . ? 1_555 ? 15 AC4 4 CYS D 61 ? CYS B 276 . ? 1_555 ? 16 AC4 4 CYS D 64 ? CYS B 279 . ? 1_555 ? # _database_PDB_matrix.entry_id 1KB4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1KB4 _atom_sites.fract_transf_matrix[1][1] 0.016261 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016261 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004133 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 401 401 DC C C . n A 1 2 DA 2 402 402 DA A C . n A 1 3 DC 3 403 403 DC C C . n A 1 4 DA 4 404 404 DA A C . n A 1 5 DG 5 405 405 DG G C . n A 1 6 DG 6 406 406 DG G C . n A 1 7 DT 7 407 407 DT T C . n A 1 8 DC 8 408 408 DC C C . n A 1 9 DA 9 409 409 DA A C . n A 1 10 DC 10 410 410 DC C C . n A 1 11 DG 11 411 411 DG G C . n A 1 12 DA 12 412 412 DA A C . n A 1 13 DA 13 413 413 DA A C . n A 1 14 DG 14 414 414 DG G C . n A 1 15 DG 15 415 415 DG G C . n A 1 16 DT 16 416 416 DT T C . n A 1 17 DC 17 417 417 DC C C . n A 1 18 DA 18 418 418 DA A C . n B 2 1 DT 1 419 419 DT T D . n B 2 2 DG 2 420 420 DG G D . n B 2 3 DA 3 421 421 DA A D . n B 2 4 DC 4 422 422 DC C D . n B 2 5 DC 5 423 423 DC C D . n B 2 6 DT 6 424 424 DT T D . n B 2 7 DT 7 425 425 DT T D . n B 2 8 DC 8 426 426 DC C D . n B 2 9 DG 9 427 427 DG G D . n B 2 10 DT 10 428 428 DT T D . n B 2 11 DG 11 429 429 DG G D . n B 2 12 DA 12 430 430 DA A D . n B 2 13 DC 13 431 431 DC C D . n B 2 14 DC 14 432 432 DC C D . n B 2 15 DT 15 433 433 DT T D . n B 2 16 DG 16 434 434 DG G D . n B 2 17 DT 17 435 435 DT T D . n B 2 18 DG 18 436 436 DG G D . n C 3 1 PHE 1 16 ? ? ? A . n C 3 2 ASP 2 17 ? ? ? A . n C 3 3 ARG 3 18 ? ? ? A . n C 3 4 ASN 4 19 ? ? ? A . n C 3 5 VAL 5 20 ? ? ? A . n C 3 6 PRO 6 21 ? ? ? A . n C 3 7 ARG 7 22 22 ARG ARG A . n C 3 8 ILE 8 23 23 ILE ILE A . n C 3 9 CYS 9 24 24 CYS CYS A . n C 3 10 GLY 10 25 25 GLY GLY A . n C 3 11 VAL 11 26 26 VAL VAL A . n C 3 12 CYS 12 27 27 CYS CYS A . n C 3 13 GLY 13 28 28 GLY GLY A . n C 3 14 ASP 14 29 29 ASP ASP A . n C 3 15 ARG 15 30 30 ARG ARG A . n C 3 16 ALA 16 31 31 ALA ALA A . n C 3 17 THR 17 32 32 THR THR A . n C 3 18 GLY 18 33 33 GLY GLY A . n C 3 19 PHE 19 34 34 PHE PHE A . n C 3 20 HIS 20 35 35 HIS HIS A . n C 3 21 PHE 21 36 36 PHE PHE A . n C 3 22 ASN 22 37 37 ASN ASN A . n C 3 23 ALA 23 38 38 ALA ALA A . n C 3 24 MET 24 39 39 MET MET A . n C 3 25 THR 25 40 40 THR THR A . n C 3 26 CYS 26 41 41 CYS CYS A . n C 3 27 GLU 27 42 42 GLU GLU A . n C 3 28 GLY 28 43 43 GLY GLY A . n C 3 29 CYS 29 44 44 CYS CYS A . n C 3 30 LYS 30 45 45 LYS LYS A . n C 3 31 GLY 31 46 46 GLY GLY A . n C 3 32 PHE 32 47 47 PHE PHE A . n C 3 33 PHE 33 48 48 PHE PHE A . n C 3 34 ARG 34 49 49 ARG ARG A . n C 3 35 ARG 35 50 50 ARG ARG A . n C 3 36 SER 36 51 51 SER SER A . n C 3 37 MET 37 52 52 MET MET A . n C 3 38 LYS 38 53 53 LYS LYS A . n C 3 39 ARG 39 54 54 ARG ARG A . n C 3 40 LYS 40 55 55 LYS LYS A . n C 3 41 ALA 41 56 56 ALA ALA A . n C 3 42 LEU 42 57 57 LEU LEU A . n C 3 43 PHE 43 58 58 PHE PHE A . n C 3 44 THR 44 59 59 THR THR A . n C 3 45 CYS 45 60 60 CYS CYS A . n C 3 46 PRO 46 61 61 PRO PRO A . n C 3 47 PHE 47 62 62 PHE PHE A . n C 3 48 ASN 48 63 63 ASN ASN A . n C 3 49 GLY 49 64 64 GLY GLY A . n C 3 50 ASP 50 65 65 ASP ASP A . n C 3 51 CYS 51 66 66 CYS CYS A . n C 3 52 ARG 52 67 67 ARG ARG A . n C 3 53 ILE 53 68 68 ILE ILE A . n C 3 54 THR 54 69 69 THR THR A . n C 3 55 LYS 55 70 70 LYS LYS A . n C 3 56 ASP 56 71 71 ASP ASP A . n C 3 57 ASN 57 72 72 ASN ASN A . n C 3 58 ARG 58 73 73 ARG ARG A . n C 3 59 ARG 59 74 74 ARG ARG A . n C 3 60 HIS 60 75 75 HIS HIS A . n C 3 61 CYS 61 76 76 CYS CYS A . n C 3 62 GLN 62 77 77 GLN GLN A . n C 3 63 ALA 63 78 78 ALA ALA A . n C 3 64 CYS 64 79 79 CYS CYS A . n C 3 65 ARG 65 80 80 ARG ARG A . n C 3 66 LEU 66 81 81 LEU LEU A . n C 3 67 LYS 67 82 82 LYS LYS A . n C 3 68 ARG 68 83 83 ARG ARG A . n C 3 69 CYS 69 84 84 CYS CYS A . n C 3 70 VAL 70 85 85 VAL VAL A . n C 3 71 ASP 71 86 86 ASP ASP A . n C 3 72 ILE 72 87 87 ILE ILE A . n C 3 73 GLY 73 88 88 GLY GLY A . n C 3 74 MET 74 89 89 MET MET A . n C 3 75 MET 75 90 90 MET MET A . n C 3 76 LYS 76 91 91 LYS LYS A . n C 3 77 GLU 77 92 92 GLU GLU A . n C 3 78 PHE 78 93 93 PHE PHE A . n C 3 79 ILE 79 94 94 ILE ILE A . n C 3 80 LEU 80 95 95 LEU LEU A . n C 3 81 THR 81 96 96 THR THR A . n C 3 82 ASP 82 97 97 ASP ASP A . n C 3 83 GLU 83 98 98 GLU GLU A . n C 3 84 GLU 84 99 99 GLU GLU A . n C 3 85 VAL 85 100 100 VAL VAL A . n C 3 86 GLN 86 101 101 GLN GLN A . n C 3 87 ARG 87 102 102 ARG ARG A . n C 3 88 LYS 88 103 103 LYS LYS A . n C 3 89 ARG 89 104 104 ARG ARG A . n C 3 90 GLU 90 105 105 GLU GLU A . n C 3 91 MET 91 106 106 MET MET A . n C 3 92 ILE 92 107 107 ILE ILE A . n C 3 93 LEU 93 108 108 LEU LEU A . n C 3 94 LYS 94 109 109 LYS LYS A . n C 3 95 ARG 95 110 110 ARG ARG A . n C 3 96 LYS 96 111 111 LYS LYS A . n C 3 97 GLU 97 112 112 GLU GLU A . n C 3 98 GLU 98 113 113 GLU GLU A . n C 3 99 GLU 99 114 114 GLU GLU A . n C 3 100 ALA 100 115 ? ? ? A . n C 3 101 LEU 101 116 ? ? ? A . n C 3 102 LYS 102 117 ? ? ? A . n C 3 103 ASP 103 118 ? ? ? A . n C 3 104 SER 104 119 ? ? ? A . n C 3 105 LEU 105 120 ? ? ? A . n C 3 106 ARG 106 121 ? ? ? A . n C 3 107 PRO 107 122 ? ? ? A . n C 3 108 LYS 108 123 ? ? ? A . n C 3 109 LEU 109 124 ? ? ? A . n C 3 110 SER 110 125 ? ? ? A . n D 3 1 PHE 1 216 ? ? ? B . n D 3 2 ASP 2 217 ? ? ? B . n D 3 3 ARG 3 218 ? ? ? B . n D 3 4 ASN 4 219 ? ? ? B . n D 3 5 VAL 5 220 ? ? ? B . n D 3 6 PRO 6 221 ? ? ? B . n D 3 7 ARG 7 222 222 ARG ARG B . n D 3 8 ILE 8 223 223 ILE ILE B . n D 3 9 CYS 9 224 224 CYS CYS B . n D 3 10 GLY 10 225 225 GLY GLY B . n D 3 11 VAL 11 226 226 VAL VAL B . n D 3 12 CYS 12 227 227 CYS CYS B . n D 3 13 GLY 13 228 228 GLY GLY B . n D 3 14 ASP 14 229 229 ASP ASP B . n D 3 15 ARG 15 230 230 ARG ARG B . n D 3 16 ALA 16 231 231 ALA ALA B . n D 3 17 THR 17 232 232 THR THR B . n D 3 18 GLY 18 233 233 GLY GLY B . n D 3 19 PHE 19 234 234 PHE PHE B . n D 3 20 HIS 20 235 235 HIS HIS B . n D 3 21 PHE 21 236 236 PHE PHE B . n D 3 22 ASN 22 237 237 ASN ASN B . n D 3 23 ALA 23 238 238 ALA ALA B . n D 3 24 MET 24 239 239 MET MET B . n D 3 25 THR 25 240 240 THR THR B . n D 3 26 CYS 26 241 241 CYS CYS B . n D 3 27 GLU 27 242 242 GLU GLU B . n D 3 28 GLY 28 243 243 GLY GLY B . n D 3 29 CYS 29 244 244 CYS CYS B . n D 3 30 LYS 30 245 245 LYS LYS B . n D 3 31 GLY 31 246 246 GLY GLY B . n D 3 32 PHE 32 247 247 PHE PHE B . n D 3 33 PHE 33 248 248 PHE PHE B . n D 3 34 ARG 34 249 249 ARG ARG B . n D 3 35 ARG 35 250 250 ARG ARG B . n D 3 36 SER 36 251 251 SER SER B . n D 3 37 MET 37 252 252 MET MET B . n D 3 38 LYS 38 253 253 LYS LYS B . n D 3 39 ARG 39 254 254 ARG ARG B . n D 3 40 LYS 40 255 255 LYS LYS B . n D 3 41 ALA 41 256 256 ALA ALA B . n D 3 42 LEU 42 257 257 LEU LEU B . n D 3 43 PHE 43 258 258 PHE PHE B . n D 3 44 THR 44 259 259 THR THR B . n D 3 45 CYS 45 260 260 CYS CYS B . n D 3 46 PRO 46 261 261 PRO PRO B . n D 3 47 PHE 47 262 262 PHE PHE B . n D 3 48 ASN 48 263 263 ASN ASN B . n D 3 49 GLY 49 264 264 GLY GLY B . n D 3 50 ASP 50 265 265 ASP ASP B . n D 3 51 CYS 51 266 266 CYS CYS B . n D 3 52 ARG 52 267 267 ARG ARG B . n D 3 53 ILE 53 268 268 ILE ILE B . n D 3 54 THR 54 269 269 THR THR B . n D 3 55 LYS 55 270 270 LYS LYS B . n D 3 56 ASP 56 271 271 ASP ASP B . n D 3 57 ASN 57 272 272 ASN ASN B . n D 3 58 ARG 58 273 273 ARG ARG B . n D 3 59 ARG 59 274 274 ARG ARG B . n D 3 60 HIS 60 275 275 HIS HIS B . n D 3 61 CYS 61 276 276 CYS CYS B . n D 3 62 GLN 62 277 277 GLN GLN B . n D 3 63 ALA 63 278 278 ALA ALA B . n D 3 64 CYS 64 279 279 CYS CYS B . n D 3 65 ARG 65 280 280 ARG ARG B . n D 3 66 LEU 66 281 281 LEU LEU B . n D 3 67 LYS 67 282 282 LYS LYS B . n D 3 68 ARG 68 283 283 ARG ARG B . n D 3 69 CYS 69 284 284 CYS CYS B . n D 3 70 VAL 70 285 285 VAL VAL B . n D 3 71 ASP 71 286 286 ASP ASP B . n D 3 72 ILE 72 287 287 ILE ILE B . n D 3 73 GLY 73 288 288 GLY GLY B . n D 3 74 MET 74 289 289 MET MET B . n D 3 75 MET 75 290 290 MET MET B . n D 3 76 LYS 76 291 291 LYS LYS B . n D 3 77 GLU 77 292 292 GLU GLU B . n D 3 78 PHE 78 293 293 PHE PHE B . n D 3 79 ILE 79 294 294 ILE ILE B . n D 3 80 LEU 80 295 295 LEU LEU B . n D 3 81 THR 81 296 296 THR THR B . n D 3 82 ASP 82 297 297 ASP ASP B . n D 3 83 GLU 83 298 298 GLU GLU B . n D 3 84 GLU 84 299 299 GLU GLU B . n D 3 85 VAL 85 300 300 VAL VAL B . n D 3 86 GLN 86 301 301 GLN GLN B . n D 3 87 ARG 87 302 302 ARG ARG B . n D 3 88 LYS 88 303 303 LYS LYS B . n D 3 89 ARG 89 304 304 ARG ARG B . n D 3 90 GLU 90 305 305 GLU GLU B . n D 3 91 MET 91 306 306 MET MET B . n D 3 92 ILE 92 307 307 ILE ILE B . n D 3 93 LEU 93 308 308 LEU LEU B . n D 3 94 LYS 94 309 309 LYS LYS B . n D 3 95 ARG 95 310 310 ARG ARG B . n D 3 96 LYS 96 311 311 LYS LYS B . n D 3 97 GLU 97 312 312 GLU GLU B . n D 3 98 GLU 98 313 313 GLU GLU B . n D 3 99 GLU 99 314 314 GLU GLU B . n D 3 100 ALA 100 315 315 ALA ALA B . n D 3 101 LEU 101 316 316 LEU LEU B . n D 3 102 LYS 102 317 317 LYS LYS B . n D 3 103 ASP 103 318 318 ASP ASP B . n D 3 104 SER 104 319 319 SER SER B . n D 3 105 LEU 105 320 320 LEU LEU B . n D 3 106 ARG 106 321 ? ? ? B . n D 3 107 PRO 107 322 ? ? ? B . n D 3 108 LYS 108 323 ? ? ? B . n D 3 109 LEU 109 324 ? ? ? B . n D 3 110 SER 110 325 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN 1 150 150 ZN ZN A . F 4 ZN 1 151 151 ZN ZN A . G 4 ZN 1 350 350 ZN ZN B . H 4 ZN 1 351 351 ZN ZN B . I 5 HOH 1 607 607 HOH WAT C . I 5 HOH 2 613 613 HOH WAT C . I 5 HOH 3 620 620 HOH WAT C . I 5 HOH 4 624 624 HOH WAT C . I 5 HOH 5 626 626 HOH WAT C . I 5 HOH 6 628 628 HOH WAT C . I 5 HOH 7 629 629 HOH WAT C . J 5 HOH 1 617 617 HOH WAT D . J 5 HOH 2 622 622 HOH WAT D . J 5 HOH 3 627 627 HOH WAT D . K 5 HOH 1 601 601 HOH WAT A . K 5 HOH 2 603 603 HOH WAT A . K 5 HOH 3 604 604 HOH WAT A . K 5 HOH 4 605 605 HOH WAT A . K 5 HOH 5 608 608 HOH WAT A . K 5 HOH 6 609 609 HOH WAT A . K 5 HOH 7 612 612 HOH WAT A . K 5 HOH 8 614 614 HOH WAT A . K 5 HOH 9 615 615 HOH WAT A . K 5 HOH 10 616 616 HOH WAT A . K 5 HOH 11 618 618 HOH WAT A . K 5 HOH 12 623 623 HOH WAT A . K 5 HOH 13 625 625 HOH WAT A . L 5 HOH 1 602 602 HOH WAT B . L 5 HOH 2 606 606 HOH WAT B . L 5 HOH 3 610 610 HOH WAT B . L 5 HOH 4 611 611 HOH WAT B . L 5 HOH 5 619 619 HOH WAT B . L 5 HOH 6 621 621 HOH WAT B . L 5 HOH 7 630 630 HOH WAT B . L 5 HOH 8 631 631 HOH WAT B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 9 ? A CYS 24 ? 1_555 ZN ? E ZN . ? A ZN 150 ? 1_555 SG ? C CYS 12 ? A CYS 27 ? 1_555 113.3 ? 2 SG ? C CYS 9 ? A CYS 24 ? 1_555 ZN ? E ZN . ? A ZN 150 ? 1_555 SG ? C CYS 26 ? A CYS 41 ? 1_555 107.4 ? 3 SG ? C CYS 12 ? A CYS 27 ? 1_555 ZN ? E ZN . ? A ZN 150 ? 1_555 SG ? C CYS 26 ? A CYS 41 ? 1_555 99.1 ? 4 SG ? C CYS 9 ? A CYS 24 ? 1_555 ZN ? E ZN . ? A ZN 150 ? 1_555 SG ? C CYS 29 ? A CYS 44 ? 1_555 122.9 ? 5 SG ? C CYS 12 ? A CYS 27 ? 1_555 ZN ? E ZN . ? A ZN 150 ? 1_555 SG ? C CYS 29 ? A CYS 44 ? 1_555 110.9 ? 6 SG ? C CYS 26 ? A CYS 41 ? 1_555 ZN ? E ZN . ? A ZN 150 ? 1_555 SG ? C CYS 29 ? A CYS 44 ? 1_555 99.3 ? 7 SG ? C CYS 45 ? A CYS 60 ? 1_555 ZN ? F ZN . ? A ZN 151 ? 1_555 SG ? C CYS 51 ? A CYS 66 ? 1_555 104.8 ? 8 SG ? C CYS 45 ? A CYS 60 ? 1_555 ZN ? F ZN . ? A ZN 151 ? 1_555 SG ? C CYS 61 ? A CYS 76 ? 1_555 104.0 ? 9 SG ? C CYS 51 ? A CYS 66 ? 1_555 ZN ? F ZN . ? A ZN 151 ? 1_555 SG ? C CYS 61 ? A CYS 76 ? 1_555 107.7 ? 10 SG ? C CYS 45 ? A CYS 60 ? 1_555 ZN ? F ZN . ? A ZN 151 ? 1_555 SG ? C CYS 64 ? A CYS 79 ? 1_555 116.6 ? 11 SG ? C CYS 51 ? A CYS 66 ? 1_555 ZN ? F ZN . ? A ZN 151 ? 1_555 SG ? C CYS 64 ? A CYS 79 ? 1_555 107.8 ? 12 SG ? C CYS 61 ? A CYS 76 ? 1_555 ZN ? F ZN . ? A ZN 151 ? 1_555 SG ? C CYS 64 ? A CYS 79 ? 1_555 115.3 ? 13 SG ? D CYS 9 ? B CYS 224 ? 1_555 ZN ? G ZN . ? B ZN 350 ? 1_555 SG ? D CYS 12 ? B CYS 227 ? 1_555 113.1 ? 14 SG ? D CYS 9 ? B CYS 224 ? 1_555 ZN ? G ZN . ? B ZN 350 ? 1_555 SG ? D CYS 26 ? B CYS 241 ? 1_555 106.6 ? 15 SG ? D CYS 12 ? B CYS 227 ? 1_555 ZN ? G ZN . ? B ZN 350 ? 1_555 SG ? D CYS 26 ? B CYS 241 ? 1_555 105.7 ? 16 SG ? D CYS 9 ? B CYS 224 ? 1_555 ZN ? G ZN . ? B ZN 350 ? 1_555 SG ? D CYS 29 ? B CYS 244 ? 1_555 115.2 ? 17 SG ? D CYS 12 ? B CYS 227 ? 1_555 ZN ? G ZN . ? B ZN 350 ? 1_555 SG ? D CYS 29 ? B CYS 244 ? 1_555 111.8 ? 18 SG ? D CYS 26 ? B CYS 241 ? 1_555 ZN ? G ZN . ? B ZN 350 ? 1_555 SG ? D CYS 29 ? B CYS 244 ? 1_555 103.4 ? 19 SG ? D CYS 45 ? B CYS 260 ? 1_555 ZN ? H ZN . ? B ZN 351 ? 1_555 SG ? D CYS 51 ? B CYS 266 ? 1_555 131.0 ? 20 SG ? D CYS 45 ? B CYS 260 ? 1_555 ZN ? H ZN . ? B ZN 351 ? 1_555 SG ? D CYS 61 ? B CYS 276 ? 1_555 94.3 ? 21 SG ? D CYS 51 ? B CYS 266 ? 1_555 ZN ? H ZN . ? B ZN 351 ? 1_555 SG ? D CYS 61 ? B CYS 276 ? 1_555 104.5 ? 22 SG ? D CYS 45 ? B CYS 260 ? 1_555 ZN ? H ZN . ? B ZN 351 ? 1_555 SG ? D CYS 64 ? B CYS 279 ? 1_555 111.2 ? 23 SG ? D CYS 51 ? B CYS 266 ? 1_555 ZN ? H ZN . ? B ZN 351 ? 1_555 SG ? D CYS 64 ? B CYS 279 ? 1_555 111.2 ? 24 SG ? D CYS 61 ? B CYS 276 ? 1_555 ZN ? H ZN . ? B ZN 351 ? 1_555 SG ? D CYS 64 ? B CYS 279 ? 1_555 96.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-03 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.value' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 250 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 630 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 260 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 260 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.713 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.099 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 55 ? ? 54.49 15.78 2 1 PHE A 62 ? ? -104.91 -119.01 3 1 ASP A 65 ? ? -152.02 41.55 4 1 LYS A 70 ? ? -39.25 -38.18 5 1 ARG A 104 ? ? -72.54 25.09 6 1 LYS A 111 ? ? -97.47 -69.97 7 1 GLU A 112 ? ? -64.01 32.21 8 1 GLU A 113 ? ? -146.46 18.16 9 1 PHE B 262 ? ? -112.90 -122.20 10 1 ASN B 263 ? ? -79.67 -70.31 11 1 ASP B 265 ? ? -156.13 56.96 12 1 MET B 306 ? ? -55.74 13.65 13 1 ASP B 318 ? ? -90.70 39.37 14 1 SER B 319 ? ? -137.17 -48.80 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC C 401 ? ? 0.069 'SIDE CHAIN' 2 1 DG C 414 ? ? 0.058 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 30 ? CG ? C ARG 15 CG 2 1 Y 1 A ARG 30 ? CD ? C ARG 15 CD 3 1 Y 1 A ARG 30 ? NE ? C ARG 15 NE 4 1 Y 1 A ARG 30 ? CZ ? C ARG 15 CZ 5 1 Y 1 A ARG 30 ? NH1 ? C ARG 15 NH1 6 1 Y 1 A ARG 30 ? NH2 ? C ARG 15 NH2 7 1 Y 1 A GLN 101 ? CG ? C GLN 86 CG 8 1 Y 1 A GLN 101 ? CD ? C GLN 86 CD 9 1 Y 1 A GLN 101 ? OE1 ? C GLN 86 OE1 10 1 Y 1 A GLN 101 ? NE2 ? C GLN 86 NE2 11 1 Y 1 A ARG 110 ? CG ? C ARG 95 CG 12 1 Y 1 A ARG 110 ? CD ? C ARG 95 CD 13 1 Y 1 A ARG 110 ? NE ? C ARG 95 NE 14 1 Y 1 A ARG 110 ? CZ ? C ARG 95 CZ 15 1 Y 1 A ARG 110 ? NH1 ? C ARG 95 NH1 16 1 Y 1 A ARG 110 ? NH2 ? C ARG 95 NH2 17 1 Y 1 A LYS 111 ? CG ? C LYS 96 CG 18 1 Y 1 A LYS 111 ? CD ? C LYS 96 CD 19 1 Y 1 A LYS 111 ? CE ? C LYS 96 CE 20 1 Y 1 A LYS 111 ? NZ ? C LYS 96 NZ 21 1 Y 1 A GLU 112 ? CG ? C GLU 97 CG 22 1 Y 1 A GLU 112 ? CD ? C GLU 97 CD 23 1 Y 1 A GLU 112 ? OE1 ? C GLU 97 OE1 24 1 Y 1 A GLU 112 ? OE2 ? C GLU 97 OE2 25 1 Y 1 A GLU 114 ? CG ? C GLU 99 CG 26 1 Y 1 A GLU 114 ? CD ? C GLU 99 CD 27 1 Y 1 A GLU 114 ? OE1 ? C GLU 99 OE1 28 1 Y 1 A GLU 114 ? OE2 ? C GLU 99 OE2 29 1 Y 1 B ARG 230 ? CG ? D ARG 15 CG 30 1 Y 1 B ARG 230 ? CD ? D ARG 15 CD 31 1 Y 1 B ARG 230 ? NE ? D ARG 15 NE 32 1 Y 1 B ARG 230 ? CZ ? D ARG 15 CZ 33 1 Y 1 B ARG 230 ? NH1 ? D ARG 15 NH1 34 1 Y 1 B ARG 230 ? NH2 ? D ARG 15 NH2 35 1 Y 1 B ARG 267 ? CG ? D ARG 52 CG 36 1 Y 1 B ARG 267 ? CD ? D ARG 52 CD 37 1 Y 1 B ARG 267 ? NE ? D ARG 52 NE 38 1 Y 1 B ARG 267 ? CZ ? D ARG 52 CZ 39 1 Y 1 B ARG 267 ? NH1 ? D ARG 52 NH1 40 1 Y 1 B ARG 267 ? NH2 ? D ARG 52 NH2 41 1 Y 1 B ARG 302 ? CG ? D ARG 87 CG 42 1 Y 1 B ARG 302 ? CD ? D ARG 87 CD 43 1 Y 1 B ARG 302 ? NE ? D ARG 87 NE 44 1 Y 1 B ARG 302 ? CZ ? D ARG 87 CZ 45 1 Y 1 B ARG 302 ? NH1 ? D ARG 87 NH1 46 1 Y 1 B ARG 302 ? NH2 ? D ARG 87 NH2 47 1 Y 1 B LYS 303 ? CG ? D LYS 88 CG 48 1 Y 1 B LYS 303 ? CD ? D LYS 88 CD 49 1 Y 1 B LYS 303 ? CE ? D LYS 88 CE 50 1 Y 1 B LYS 303 ? NZ ? D LYS 88 NZ 51 1 Y 1 B ARG 304 ? CG ? D ARG 89 CG 52 1 Y 1 B ARG 304 ? CD ? D ARG 89 CD 53 1 Y 1 B ARG 304 ? NE ? D ARG 89 NE 54 1 Y 1 B ARG 304 ? CZ ? D ARG 89 CZ 55 1 Y 1 B ARG 304 ? NH1 ? D ARG 89 NH1 56 1 Y 1 B ARG 304 ? NH2 ? D ARG 89 NH2 57 1 Y 1 B GLU 305 ? CG ? D GLU 90 CG 58 1 Y 1 B GLU 305 ? CD ? D GLU 90 CD 59 1 Y 1 B GLU 305 ? OE1 ? D GLU 90 OE1 60 1 Y 1 B GLU 305 ? OE2 ? D GLU 90 OE2 61 1 Y 1 B MET 306 ? CG ? D MET 91 CG 62 1 Y 1 B MET 306 ? SD ? D MET 91 SD 63 1 Y 1 B MET 306 ? CE ? D MET 91 CE 64 1 Y 1 B LYS 309 ? CG ? D LYS 94 CG 65 1 Y 1 B LYS 309 ? CD ? D LYS 94 CD 66 1 Y 1 B LYS 309 ? CE ? D LYS 94 CE 67 1 Y 1 B LYS 309 ? NZ ? D LYS 94 NZ 68 1 Y 1 B ARG 310 ? CG ? D ARG 95 CG 69 1 Y 1 B ARG 310 ? CD ? D ARG 95 CD 70 1 Y 1 B ARG 310 ? NE ? D ARG 95 NE 71 1 Y 1 B ARG 310 ? CZ ? D ARG 95 CZ 72 1 Y 1 B ARG 310 ? NH1 ? D ARG 95 NH1 73 1 Y 1 B ARG 310 ? NH2 ? D ARG 95 NH2 74 1 Y 1 B GLU 312 ? CG ? D GLU 97 CG 75 1 Y 1 B GLU 312 ? CD ? D GLU 97 CD 76 1 Y 1 B GLU 312 ? OE1 ? D GLU 97 OE1 77 1 Y 1 B GLU 312 ? OE2 ? D GLU 97 OE2 78 1 Y 1 B GLU 313 ? CG ? D GLU 98 CG 79 1 Y 1 B GLU 313 ? CD ? D GLU 98 CD 80 1 Y 1 B GLU 313 ? OE1 ? D GLU 98 OE1 81 1 Y 1 B GLU 313 ? OE2 ? D GLU 98 OE2 82 1 Y 1 B GLU 314 ? CG ? D GLU 99 CG 83 1 Y 1 B GLU 314 ? CD ? D GLU 99 CD 84 1 Y 1 B GLU 314 ? OE1 ? D GLU 99 OE1 85 1 Y 1 B GLU 314 ? OE2 ? D GLU 99 OE2 86 1 Y 1 B LYS 317 ? CG ? D LYS 102 CG 87 1 Y 1 B LYS 317 ? CD ? D LYS 102 CD 88 1 Y 1 B LYS 317 ? CE ? D LYS 102 CE 89 1 Y 1 B LYS 317 ? NZ ? D LYS 102 NZ 90 1 Y 1 B ASP 318 ? CG ? D ASP 103 CG 91 1 Y 1 B ASP 318 ? OD1 ? D ASP 103 OD1 92 1 Y 1 B ASP 318 ? OD2 ? D ASP 103 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PHE 16 ? C PHE 1 2 1 Y 1 A ASP 17 ? C ASP 2 3 1 Y 1 A ARG 18 ? C ARG 3 4 1 Y 1 A ASN 19 ? C ASN 4 5 1 Y 1 A VAL 20 ? C VAL 5 6 1 Y 1 A PRO 21 ? C PRO 6 7 1 Y 1 A ALA 115 ? C ALA 100 8 1 Y 1 A LEU 116 ? C LEU 101 9 1 Y 1 A LYS 117 ? C LYS 102 10 1 Y 1 A ASP 118 ? C ASP 103 11 1 Y 1 A SER 119 ? C SER 104 12 1 Y 1 A LEU 120 ? C LEU 105 13 1 Y 1 A ARG 121 ? C ARG 106 14 1 Y 1 A PRO 122 ? C PRO 107 15 1 Y 1 A LYS 123 ? C LYS 108 16 1 Y 1 A LEU 124 ? C LEU 109 17 1 Y 1 A SER 125 ? C SER 110 18 1 Y 1 B PHE 216 ? D PHE 1 19 1 Y 1 B ASP 217 ? D ASP 2 20 1 Y 1 B ARG 218 ? D ARG 3 21 1 Y 1 B ASN 219 ? D ASN 4 22 1 Y 1 B VAL 220 ? D VAL 5 23 1 Y 1 B PRO 221 ? D PRO 6 24 1 Y 1 B ARG 321 ? D ARG 106 25 1 Y 1 B PRO 322 ? D PRO 107 26 1 Y 1 B LYS 323 ? D LYS 108 27 1 Y 1 B LEU 324 ? D LEU 109 28 1 Y 1 B SER 325 ? D SER 110 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 VAL N N N N 464 VAL CA C N S 465 VAL C C N N 466 VAL O O N N 467 VAL CB C N N 468 VAL CG1 C N N 469 VAL CG2 C N N 470 VAL OXT O N N 471 VAL H H N N 472 VAL H2 H N N 473 VAL HA H N N 474 VAL HB H N N 475 VAL HG11 H N N 476 VAL HG12 H N N 477 VAL HG13 H N N 478 VAL HG21 H N N 479 VAL HG22 H N N 480 VAL HG23 H N N 481 VAL HXT H N N 482 ZN ZN ZN N N 483 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 VAL N CA sing N N 455 VAL N H sing N N 456 VAL N H2 sing N N 457 VAL CA C sing N N 458 VAL CA CB sing N N 459 VAL CA HA sing N N 460 VAL C O doub N N 461 VAL C OXT sing N N 462 VAL CB CG1 sing N N 463 VAL CB CG2 sing N N 464 VAL CB HB sing N N 465 VAL CG1 HG11 sing N N 466 VAL CG1 HG12 sing N N 467 VAL CG1 HG13 sing N N 468 VAL CG2 HG21 sing N N 469 VAL CG2 HG22 sing N N 470 VAL CG2 HG23 sing N N 471 VAL OXT HXT sing N N 472 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1KB4 'double helix' 1KB4 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 18 1_555 0.041 -0.119 -0.117 4.788 -11.089 -1.570 1 C_DC401:DG436_D C 401 ? D 436 ? 19 1 1 A DA 2 1_555 B DT 17 1_555 -0.312 -0.363 0.365 1.446 -7.069 -0.360 2 C_DA402:DT435_D C 402 ? D 435 ? 20 1 1 A DC 3 1_555 B DG 16 1_555 0.018 -0.219 -0.358 7.680 -3.022 1.001 3 C_DC403:DG434_D C 403 ? D 434 ? 19 1 1 A DA 4 1_555 B DT 15 1_555 -0.409 0.149 0.056 -6.854 -10.808 -0.167 4 C_DA404:DT433_D C 404 ? D 433 ? 20 1 1 A DG 5 1_555 B DC 14 1_555 -0.224 -0.257 0.290 3.738 0.263 3.645 5 C_DG405:DC432_D C 405 ? D 432 ? 19 1 1 A DG 6 1_555 B DC 13 1_555 -0.272 -0.264 -0.337 -14.069 -9.547 0.409 6 C_DG406:DC431_D C 406 ? D 431 ? 19 1 1 A DT 7 1_555 B DA 12 1_555 -0.591 -0.065 0.339 -7.867 -15.209 3.558 7 C_DT407:DA430_D C 407 ? D 430 ? 20 1 1 A DC 8 1_555 B DG 11 1_555 -0.180 -0.220 -0.144 1.404 -0.186 -0.910 8 C_DC408:DG429_D C 408 ? D 429 ? 19 1 1 A DA 9 1_555 B DT 10 1_555 0.063 -0.052 0.356 11.639 -12.029 1.007 9 C_DA409:DT428_D C 409 ? D 428 ? 20 1 1 A DC 10 1_555 B DG 9 1_555 0.588 -0.200 0.244 4.712 -9.837 -3.337 10 C_DC410:DG427_D C 410 ? D 427 ? 19 1 1 A DG 11 1_555 B DC 8 1_555 -0.119 -0.136 -0.130 -2.520 -4.998 -0.691 11 C_DG411:DC426_D C 411 ? D 426 ? 19 1 1 A DA 12 1_555 B DT 7 1_555 0.200 -0.176 0.162 5.827 -3.932 2.757 12 C_DA412:DT425_D C 412 ? D 425 ? 20 1 1 A DA 13 1_555 B DT 6 1_555 -0.091 0.137 0.220 -6.099 -11.264 -0.792 13 C_DA413:DT424_D C 413 ? D 424 ? 20 1 1 A DG 14 1_555 B DC 5 1_555 -0.115 -0.211 0.038 0.150 -5.999 0.323 14 C_DG414:DC423_D C 414 ? D 423 ? 19 1 1 A DG 15 1_555 B DC 4 1_555 -0.103 -0.367 -0.129 -5.081 -6.581 -4.685 15 C_DG415:DC422_D C 415 ? D 422 ? 19 1 1 A DT 16 1_555 B DA 3 1_555 -0.227 -0.456 0.130 -1.463 -9.254 -4.503 16 C_DT416:DA421_D C 416 ? D 421 ? 20 1 1 A DC 17 1_555 B DG 2 1_555 0.476 -0.202 -0.389 7.773 -1.523 3.215 17 C_DC417:DG420_D C 417 ? D 420 ? 19 1 1 A DA 18 1_555 B DT 1 1_555 0.378 -0.147 0.311 16.882 -14.916 0.288 18 C_DA418:DT419_D C 418 ? D 419 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 18 1_555 A DA 2 1_555 B DT 17 1_555 -0.166 0.003 3.467 -1.604 8.055 34.903 -1.224 0.024 3.389 13.204 2.629 35.827 1 CC_DC401DA402:DT435DG436_DD C 401 ? D 436 ? C 402 ? D 435 ? 1 A DA 2 1_555 B DT 17 1_555 A DC 3 1_555 B DG 16 1_555 0.473 -0.290 3.334 4.994 3.467 32.509 -1.110 0.036 3.320 6.127 -8.825 33.058 2 CC_DA402DC403:DG434DT435_DD C 402 ? D 435 ? C 403 ? D 434 ? 1 A DC 3 1_555 B DG 16 1_555 A DA 4 1_555 B DT 15 1_555 -0.772 0.294 3.528 -8.332 3.625 37.592 -0.051 0.028 3.623 5.526 12.703 38.636 3 CC_DC403DA404:DT433DG434_DD C 403 ? D 434 ? C 404 ? D 433 ? 1 A DA 4 1_555 B DT 15 1_555 A DG 5 1_555 B DC 14 1_555 0.533 -0.801 3.093 -2.730 2.416 34.794 -1.671 -1.270 2.984 4.026 4.549 34.978 4 CC_DA404DG405:DC432DT433_DD C 404 ? D 433 ? C 405 ? D 432 ? 1 A DG 5 1_555 B DC 14 1_555 A DG 6 1_555 B DC 13 1_555 -0.757 -0.967 3.723 4.669 2.742 36.273 -1.956 1.916 3.522 4.374 -7.449 36.662 5 CC_DG405DG406:DC431DC432_DD C 405 ? D 432 ? C 406 ? D 431 ? 1 A DG 6 1_555 B DC 13 1_555 A DT 7 1_555 B DA 12 1_555 -0.530 -0.711 3.156 -4.634 1.324 27.578 -1.775 0.027 3.163 2.751 9.628 27.988 6 CC_DG406DT407:DA430DC431_DD C 406 ? D 431 ? C 407 ? D 430 ? 1 A DT 7 1_555 B DA 12 1_555 A DC 8 1_555 B DG 11 1_555 0.934 1.495 3.339 6.684 0.958 37.204 2.179 -0.536 3.485 1.487 -10.372 37.791 7 CC_DT407DC408:DG429DA430_DD C 407 ? D 430 ? C 408 ? D 429 ? 1 A DC 8 1_555 B DG 11 1_555 A DA 9 1_555 B DT 10 1_555 -0.502 1.456 3.137 -4.867 2.958 36.858 1.891 0.149 3.277 4.645 7.641 37.280 8 CC_DC408DA409:DT428DG429_DD C 408 ? D 429 ? C 409 ? D 428 ? 1 A DA 9 1_555 B DT 10 1_555 A DC 10 1_555 B DG 9 1_555 0.351 -0.661 3.525 1.595 -0.512 35.665 -0.999 -0.324 3.545 -0.836 -2.603 35.703 9 CC_DA409DC410:DG427DT428_DD C 409 ? D 428 ? C 410 ? D 427 ? 1 A DC 10 1_555 B DG 9 1_555 A DG 11 1_555 B DC 8 1_555 0.179 0.304 3.518 6.199 5.873 39.428 -0.281 0.501 3.514 8.583 -9.059 40.306 10 CC_DC410DG411:DC426DG427_DD C 410 ? D 427 ? C 411 ? D 426 ? 1 A DG 11 1_555 B DC 8 1_555 A DA 12 1_555 B DT 7 1_555 -0.025 0.449 3.195 -3.240 6.790 29.105 -0.519 -0.613 3.199 13.235 6.314 30.041 11 CC_DG411DA412:DT425DC426_DD C 411 ? D 426 ? C 412 ? D 425 ? 1 A DA 12 1_555 B DT 7 1_555 A DA 13 1_555 B DT 6 1_555 -1.015 -0.232 3.441 -6.273 -0.691 37.987 -0.259 0.701 3.561 -1.053 9.556 38.489 12 CC_DA412DA413:DT424DT425_DD C 412 ? D 425 ? C 413 ? D 424 ? 1 A DA 13 1_555 B DT 6 1_555 A DG 14 1_555 B DC 5 1_555 0.324 -0.578 3.253 0.940 5.744 33.993 -1.851 -0.403 3.124 9.737 -1.594 34.473 13 CC_DA413DG414:DC423DT424_DD C 413 ? D 424 ? C 414 ? D 423 ? 1 A DG 14 1_555 B DC 5 1_555 A DG 15 1_555 B DC 4 1_555 -0.656 -0.971 3.507 0.186 1.286 35.772 -1.778 1.096 3.467 2.093 -0.302 35.795 14 CC_DG414DG415:DC422DC423_DD C 414 ? D 423 ? C 415 ? D 422 ? 1 A DG 15 1_555 B DC 4 1_555 A DT 16 1_555 B DA 3 1_555 -0.461 -0.364 3.263 -0.403 1.109 29.161 -0.963 0.828 3.253 2.201 0.799 29.184 15 CC_DG415DT416:DA421DC422_DD C 415 ? D 422 ? C 416 ? D 421 ? 1 A DT 16 1_555 B DA 3 1_555 A DC 17 1_555 B DG 2 1_555 1.259 1.658 3.149 7.409 2.376 41.348 2.062 -0.980 3.401 3.329 -10.382 42.042 16 CC_DT416DC417:DG420DA421_DD C 416 ? D 421 ? C 417 ? D 420 ? 1 A DC 17 1_555 B DG 2 1_555 A DA 18 1_555 B DT 1 1_555 -0.679 1.382 3.268 -4.418 0.580 33.391 2.289 0.441 3.351 1.004 7.647 33.678 17 CC_DC417DA418:DT419DG420_DD C 417 ? D 420 ? C 418 ? D 419 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2NLL _pdbx_initial_refinement_model.details 'TR Half-Complex from PDB Entry 2NLL' #