HEADER IMMUNE SYSTEM 11-NOV-01 1KCS TITLE CRYSTAL STRUCTURE OF ANTIBODY PC282 IN COMPLEX WITH PS1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PC282 IMMUNOGLOBULIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PC282 IMMUNOGLOBULIN; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: HEAVY CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PS1 PEPTIDE; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 12 OF THE PEPTIDE IS NATURALLY FOUND IN HEPATITIS B VIRUS. KEYWDS ANTIBODY, PEPTIDE ANTIGEN COMPLEX (ANTIBODY-PEPTIDE), IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.T.NAIR,K.SINGH,Z.SIDDIQUI,B.P.NAYAK,K.V.S.RAO,D.M.SALUNKE REVDAT 4 09-OCT-24 1KCS 1 REMARK REVDAT 3 24-FEB-09 1KCS 1 VERSN REVDAT 2 01-APR-03 1KCS 1 JRNL REVDAT 1 11-MAY-02 1KCS 0 JRNL AUTH D.T.NAIR,K.SINGH,Z.SIDDIQUI,B.P.NAYAK,K.V.RAO,D.M.SALUNKE JRNL TITL EPITOPE RECOGNITION BY DIVERSE ANTIBODIES SUGGESTS JRNL TITL 2 CONFORMATIONAL CONVERGENCE IN AN ANTIBODY RESPONSE. JRNL REF J.IMMUNOL. V. 168 2371 2002 JRNL REFN ISSN 0022-1767 JRNL PMID 11859128 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.T.NAIR,K.SINGH,N.SAHU,K.V.RAO,D.M.SALUNKE REMARK 1 TITL CRYSTAL STRUCTURE OF AN ANTIBODY BOUND TO AN IMMUNODOMINANT REMARK 1 TITL 2 PEPTIDE EPITOPE: NOVEL FEATURES IN PEPTIDE-ANTIBODY REMARK 1 TITL 3 RECOGNITION REMARK 1 REF J.IMMUNOL. V. 165 6949 2000 REMARK 1 REFN ISSN 0022-1767 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.5 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 175126.260 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.3 REMARK 3 NUMBER OF REFLECTIONS : 14014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 789 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1592 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 117 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.033 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : -3.39000 REMARK 3 B33 (A**2) : 4.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.51 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 46.47 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-01. REMARK 100 THE DEPOSITION ID IS D_1000014819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8K, PH 7.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.76200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS P 1 REMARK 465 ALA P 9 REMARK 465 ASN P 10 REMARK 465 SER P 11 REMARK 465 THR P 12 REMARK 465 ASN P 13 REMARK 465 PRO P 14 REMARK 465 ASP P 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU H 199 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP H 191 CB TRP H 191 CG -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 96 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 PRO H 150 C - N - CA ANGL. DEV. = -22.8 DEGREES REMARK 500 PRO H 150 CA - N - CD ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO H 152 C - N - CA ANGL. DEV. = 57.4 DEGREES REMARK 500 PRO H 152 C - N - CD ANGL. DEV. = -42.5 DEGREES REMARK 500 PRO H 152 CA - N - CD ANGL. DEV. = -20.8 DEGREES REMARK 500 PRO H 152 N - CA - CB ANGL. DEV. = 11.3 DEGREES REMARK 500 PRO H 152 N - CD - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 TRP H 191 C - N - CA ANGL. DEV. = -20.2 DEGREES REMARK 500 TRP H 191 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 PRO H 192 C - N - CA ANGL. DEV. = -9.6 DEGREES REMARK 500 PRO H 192 CA - N - CD ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 7 -83.28 -46.69 REMARK 500 TYR L 32 48.51 -88.89 REMARK 500 ALA L 51 -32.64 68.21 REMARK 500 SER L 52 27.00 -145.77 REMARK 500 SER L 67 147.85 -170.90 REMARK 500 ALA L 68 79.76 29.34 REMARK 500 THR L 69 -25.16 99.08 REMARK 500 SER L 76 -63.72 -29.51 REMARK 500 ALA L 84 178.86 169.74 REMARK 500 SER L 94 -64.90 -14.99 REMARK 500 SER L 138 80.63 38.42 REMARK 500 ILE L 144 128.01 -172.46 REMARK 500 GLN L 166 129.94 48.71 REMARK 500 SER L 208 156.58 179.33 REMARK 500 SER H 15 -35.87 82.33 REMARK 500 TYR H 27 145.95 -176.94 REMARK 500 TYR H 33 165.71 84.27 REMARK 500 PRO H 129 166.86 -46.54 REMARK 500 SER H 131 -70.19 64.71 REMARK 500 THR H 133 88.87 -62.58 REMARK 500 ALA H 134 74.56 -116.42 REMARK 500 ALA H 135 14.52 -66.11 REMARK 500 ALA H 136 -121.43 56.91 REMARK 500 SER H 137 -19.64 -43.48 REMARK 500 PRO H 150 -149.21 -58.71 REMARK 500 PRO H 152 164.18 147.08 REMARK 500 VAL H 153 132.70 -177.70 REMARK 500 SER H 175 -56.30 69.35 REMARK 500 SER H 193 -104.24 -70.89 REMARK 500 ALA H 194 149.17 -37.26 REMARK 500 PRO H 203 -75.49 -34.61 REMARK 500 PRO H 215 161.47 -40.95 REMARK 500 PHE P 7 37.24 -98.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KC5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTIBODY PC287 IN COMPLEX WITH PS1 PEPTIDE REMARK 900 RELATED ID: 1KCR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTIBODY PC283 IN COMPLEX WITH PS1 PEPTIDE REMARK 900 RELATED ID: 1KCU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTIBODY PC287 REMARK 900 RELATED ID: 1KCV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTIBODY PC282 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN APPROPRIATE SEQUENCE DATABASE MATCH FOR THE REMARK 999 IMMUNOGLOBULIN WAS NOT AVAILABLE AT THE TIME OF REMARK 999 PROCESSING. DBREF 1KCS L 109 214 UNP P01837 KAC_MOUSE 1 106 DBREF 1KCS H 7 98 UNP P18532 HV61_MOUSE 25 116 DBREF 1KCS P 1 15 GB 15419846 AAK97192 17 31 SEQRES 1 L 214 ASP ILE VAL MET THR GLN SER PRO LYS SER MET GLY MET SEQRES 2 L 214 SER VAL GLY GLU ALA VAL THR LEU ASN CYS LYS ALA SER SEQRES 3 L 214 GLU ASN VAL GLY THR TYR VAL SER TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN SER PRO VAL LEU LEU ILE TYR GLY ALA SER SEQRES 5 L 214 ASN ARG TYR THR GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 L 214 GLY SER ALA THR ASP PHE THR LEU THR ILE SER SER VAL SEQRES 7 L 214 GLN ALA ASP ASP ASP ALA ASP TYR TYR CYS GLY GLN SER SEQRES 8 L 214 TYR SER SER PRO LEU THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 214 GLU LEU LYS ARG ALA ASP ALA ALA PRO THR SER SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU SER SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN SER PHE TYR PRO LYS SER SEQRES 12 L 214 ILE ALA VAL LYS TRP LYS VAL ASP GLY SER LYS ARG ALA SEQRES 13 L 214 ASN GLY THR ALA ASN SER TRP THR ASP GLN ASP SER ALA SEQRES 14 L 214 SER SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP LYS TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER SER SER PRO VAL VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS SEQRES 1 H 217 GLN VAL THR LEU SER GLN SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 217 PRO SER GLN SER LEU SER LEU THR CYS THR VAL THR SER SEQRES 3 H 217 TYR SER ILE THR SER ASP TYR ALA TRP ASN TRP ILE ARG SEQRES 4 H 217 GLN PHE ALA GLY GLN SER LEU GLU TRP MET GLY TYR ILE SEQRES 5 H 217 SER TYR SER GLY SER THR SER TYR ASN PRO SER LEU LYS SEQRES 6 H 217 SER ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN SEQRES 7 H 217 PHE PHE LEU GLN LEU ASN SER VAL THR THR ASP ASP THR SEQRES 8 H 217 ALA THR TYR TYR CYS ALA ARG GLY GLY THR GLY PHE PRO SEQRES 9 H 217 TYR TRP GLY THR GLY THR ASN VAL THR VAL SER ALA ALA SEQRES 10 H 217 SER THR THR ALA PRO SER VAL PHE PRO LEU VAL PRO GLY SEQRES 11 H 217 SER ALA THR ALA ALA ALA SER ALA VAL THR LEU GLY CYS SEQRES 12 H 217 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL ALA SEQRES 13 H 217 TRP ASN GLU GLY ALA LEU SER SER GLY VAL LEU THR VAL SEQRES 14 H 217 SER ALA VAL LEU GLN SER GLY LEU TYR THR LEU SER SER SEQRES 15 H 217 ASN THR THR VAL ALA SER GLY THR TRP PRO SER ALA SER SEQRES 16 H 217 VAL THR CYS LEU VAL ALA HIS PRO LYS SER SER THR ALA SEQRES 17 H 217 ALA ASP LYS LYS ILE GLU PRO LYS ASP SEQRES 1 P 15 HIS GLN LEU ASP PRO ALA PHE GLY ALA ASN SER THR ASN SEQRES 2 P 15 PRO ASP FORMUL 4 HOH *85(H2 O) HELIX 1 1 GLN L 79 ASP L 83 5 5 HELIX 2 2 SER L 121 SER L 126 1 6 HELIX 3 3 LYS L 183 ARG L 188 1 6 HELIX 4 4 PRO H 62 LYS H 65 5 4 HELIX 5 5 THR H 87 THR H 91 5 5 HELIX 6 6 GLU H 159 ALA H 161 5 3 HELIX 7 7 PRO H 203 SER H 206 5 4 HELIX 8 8 ASP P 4 GLY P 8 5 5 SHEET 1 A 4 MET L 4 THR L 5 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 A 4 PHE L 62 SER L 67 -1 N THR L 63 O THR L 74 SHEET 1 B 6 GLY L 12 SER L 14 0 SHEET 2 B 6 THR L 102 LYS L 107 1 O LYS L 107 N MET L 13 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 B 6 VAL L 33 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 B 6 VAL L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 C 4 GLY L 12 SER L 14 0 SHEET 2 C 4 THR L 102 LYS L 107 1 O LYS L 107 N MET L 13 SHEET 3 C 4 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 GLY L 129 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 D 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 D 4 THR L 159 TRP L 163 -1 N ALA L 160 O THR L 178 SHEET 1 E 4 SER L 153 LYS L 154 0 SHEET 2 E 4 ALA L 145 VAL L 150 -1 N VAL L 150 O SER L 153 SHEET 3 E 4 SER L 191 THR L 197 -1 O GLU L 195 N LYS L 147 SHEET 4 E 4 VAL L 205 ASN L 210 -1 O VAL L 205 N ALA L 196 SHEET 1 F 4 THR H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 THR H 25 -1 O THR H 25 N THR H 3 SHEET 3 F 4 GLN H 78 LEU H 83 -1 O LEU H 83 N LEU H 18 SHEET 4 F 4 ILE H 68 ASP H 73 -1 N ASP H 73 O GLN H 78 SHEET 1 G 5 THR H 58 TYR H 60 0 SHEET 2 G 5 LEU H 46 SER H 53 -1 N TYR H 51 O SER H 59 SHEET 3 G 5 ALA H 34 GLN H 40 -1 N TRP H 37 O MET H 49 SHEET 4 G 5 ALA H 92 GLY H 99 -1 O GLY H 99 N ALA H 34 SHEET 5 G 5 TYR H 105 TRP H 106 -1 O TYR H 105 N ARG H 98 SHEET 1 H 6 THR H 58 TYR H 60 0 SHEET 2 H 6 LEU H 46 SER H 53 -1 N TYR H 51 O SER H 59 SHEET 3 H 6 ALA H 34 GLN H 40 -1 N TRP H 37 O MET H 49 SHEET 4 H 6 ALA H 92 GLY H 99 -1 O GLY H 99 N ALA H 34 SHEET 5 H 6 THR H 110 VAL H 114 -1 O VAL H 112 N ALA H 92 SHEET 6 H 6 LEU H 11 VAL H 12 1 N VAL H 12 O THR H 113 SHEET 1 I 4 SER H 123 LEU H 127 0 SHEET 2 I 4 VAL H 139 TYR H 148 -1 O LEU H 144 N PHE H 125 SHEET 3 I 4 LEU H 177 VAL H 186 -1 O VAL H 186 N VAL H 139 SHEET 4 I 4 VAL H 166 GLN H 174 -1 N LEU H 167 O ASN H 183 SHEET 1 J 3 THR H 154 TRP H 157 0 SHEET 2 J 3 THR H 197 HIS H 202 -1 O ALA H 201 N THR H 154 SHEET 3 J 3 THR H 207 LYS H 212 -1 O THR H 207 N HIS H 202 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.02 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 4 CYS H 143 CYS H 198 1555 1555 2.07 CISPEP 1 TYR L 140 PRO L 141 0 0.23 CRYST1 52.601 69.524 59.359 90.00 95.62 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019011 0.000000 0.001871 0.00000 SCALE2 0.000000 0.014384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016928 0.00000